Wall clock time and date at job start Tue Mar 31 2020 17:57:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42908 * 113.99684 * 2 1 4 4 H 1.08996 * 110.63915 * 26.86594 * 3 2 1 5 5 C 1.54319 * 110.87056 * 263.60869 * 3 2 1 6 6 N 1.47028 * 107.26947 * 219.37186 * 5 3 2 7 7 C 1.36936 * 125.64452 * 178.89615 * 6 5 3 8 8 H 1.08002 * 119.99676 * 180.02562 * 7 6 5 9 9 C 1.38811 * 120.00535 * 0.03224 * 7 6 5 10 10 N 1.31622 * 119.99558 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 120.00416 * 179.97438 * 9 7 6 12 12 H 1.48509 * 109.46776 * 89.99412 * 11 9 7 13 13 H 1.48497 * 109.47491 * 209.99612 * 11 9 7 14 14 H 1.48501 * 109.46969 * 330.00288 * 11 9 7 15 15 C 1.47419 * 108.70371 * 358.94679 * 6 5 3 16 16 C 1.54912 * 104.83391 * 24.12534 * 15 6 5 17 17 H 1.08995 * 111.03512 * 81.08074 * 16 15 6 18 18 N 1.46498 * 111.00363 * 204.91815 * 16 15 6 19 19 C 1.34777 * 119.99828 * 266.91713 * 18 16 15 20 20 O 1.21693 * 120.00014 * 0.28042 * 19 18 16 21 21 C 1.46682 * 120.00182 * 180.27909 * 19 18 16 22 22 C 1.38047 * 126.20715 * 180.02562 * 21 19 18 23 23 C 1.39241 * 106.97762 * 179.97438 * 22 21 19 24 24 C 1.35964 * 108.04075 * 0.04487 * 23 22 21 25 25 N 1.35116 * 108.76101 * 359.67374 * 24 23 22 26 26 H 0.97000 * 125.68144 * 180.36236 * 25 24 23 27 27 C 1.51017 * 123.85417 * 179.89130 * 24 23 22 28 28 C 1.53328 * 108.40730 * 343.31062 * 27 24 23 29 29 C 1.53095 * 109.53029 * 50.17991 * 28 27 24 30 30 C 1.50844 * 127.70476 * 180.13237 * 23 22 21 31 31 H 1.08992 * 109.47285 * 59.99890 * 1 2 3 32 32 H 1.08997 * 109.46790 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.46909 * 299.99213 * 1 2 3 34 34 H 1.08999 * 109.88838 * 338.79519 * 5 3 2 35 35 H 1.09006 * 109.87996 * 99.80927 * 5 3 2 36 36 H 0.97001 * 119.99905 * 180.02562 * 10 9 7 37 37 H 1.09002 * 110.36625 * 265.29189 * 15 6 5 38 38 H 1.08996 * 110.36984 * 142.96546 * 15 6 5 39 39 H 0.97001 * 120.00384 * 87.20160 * 18 16 15 40 40 H 1.08006 * 126.50964 * 359.97438 * 22 21 19 41 41 H 1.08994 * 109.68327 * 103.03910 * 27 24 23 42 42 H 1.08998 * 109.67755 * 223.54815 * 27 24 23 43 43 H 1.09000 * 109.46126 * 170.20540 * 28 27 24 44 44 H 1.09000 * 109.45832 * 290.17157 * 28 27 24 45 45 H 1.09001 * 109.47349 * 49.59417 * 29 28 27 46 46 H 1.09000 * 109.47821 * 169.59939 * 29 28 27 47 47 H 1.09002 * 109.68055 * 283.16672 * 30 23 22 48 48 H 1.08999 * 109.68203 * 43.71894 * 30 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 1 1.3352 2.0266 0.4609 5 6 2.3804 1.7425 -1.4330 6 7 3.6668 2.4502 -1.3549 7 6 4.3523 2.9792 -2.4157 8 1 5.2941 3.4822 -2.2533 9 6 3.8367 2.8690 -3.6998 10 7 2.6892 2.2556 -3.8978 11 14 4.7715 3.5912 -5.1469 12 1 5.6970 2.5690 -5.6982 13 1 3.8101 4.0075 -6.1993 14 1 5.5508 4.7712 -4.6935 15 6 4.0970 2.4948 0.0544 16 6 3.3816 1.2958 0.7256 17 1 3.9169 0.3653 0.5370 18 7 3.2164 1.5210 2.1637 19 6 4.1438 1.0639 3.0283 20 8 5.1209 0.4685 2.6139 21 6 3.9754 1.2840 4.4687 22 6 4.8409 0.8740 5.4630 23 6 4.2953 1.2909 6.6743 24 6 3.1278 1.9358 6.4105 25 7 2.9275 1.9429 5.0743 26 1 2.1713 2.3435 4.6177 27 6 2.2382 2.5340 7.4742 28 6 2.6365 1.9384 8.8297 29 6 4.1516 2.0564 9.0152 30 6 4.8603 1.0899 8.0584 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5137 0.8900 34 1 2.4775 0.8666 -2.0743 35 1 1.6123 2.4076 -1.8278 36 1 2.3290 2.1782 -4.7951 37 1 3.7839 3.4307 0.5172 38 1 5.1785 2.3790 0.1248 39 1 2.4376 1.9955 2.4941 40 1 5.7655 0.3326 5.3270 41 1 2.3687 3.6159 7.4961 42 1 1.1968 2.2942 7.2592 43 1 2.1295 2.4807 9.6278 44 1 2.3473 0.8880 8.8639 45 1 4.4658 3.0775 8.7989 46 1 4.4125 1.8062 10.0436 47 1 4.6877 0.0627 8.3797 48 1 5.9302 1.2982 8.0520 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001082304590.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:28 Heat of formation + Delta-G solvation = -42.708639 kcal Electronic energy + Delta-G solvation = -28763.397444 eV Core-core repulsion = 24818.236297 eV Total energy + Delta-G solvation = -3945.161147 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.61240 -40.88477 -39.52597 -37.56153 -37.13762 -35.73105 -33.76704 -33.10228 -30.92030 -30.13179 -29.72851 -28.70304 -27.56051 -26.28304 -24.89123 -23.39195 -22.46020 -22.25334 -21.92639 -21.13069 -19.61098 -19.44359 -18.91234 -17.96178 -17.30805 -16.86625 -16.56076 -16.35526 -15.91332 -15.85323 -15.65534 -15.32300 -15.07808 -14.83805 -14.66078 -14.49009 -14.44020 -14.11695 -13.95221 -13.66121 -13.47471 -13.26896 -13.24562 -13.03687 -12.77329 -12.64594 -12.62402 -12.37087 -12.09501 -11.89885 -11.70689 -11.63041 -11.52686 -11.34291 -11.31430 -10.80509 -10.68988 -10.24060 -9.79349 -9.01361 -8.90486 -7.90271 -5.28746 0.39461 1.44120 1.47072 1.55290 1.67709 1.86173 2.08673 2.30316 2.44505 2.72102 3.29177 3.46179 3.66921 3.79201 3.84621 3.87660 4.00473 4.05059 4.11770 4.20634 4.31163 4.38171 4.41783 4.53823 4.55922 4.60935 4.70902 4.73780 4.75984 4.77752 4.83690 4.90246 5.00404 5.12143 5.15876 5.22657 5.26599 5.31949 5.35919 5.39616 5.40267 5.56693 5.62535 5.85261 5.92621 6.10275 6.26841 6.37950 6.56013 7.01535 7.07284 7.66195 8.28612 9.19305 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.019594 B = 0.002479 C = 0.002331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.671987 B =11292.635029 C =12006.896372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.398 6.398 3 C 0.077 3.923 4 H 0.098 0.902 5 C 0.175 3.825 6 N -0.621 5.621 7 C -0.248 4.248 8 H 0.083 0.917 9 C -0.062 4.062 10 N -0.949 5.949 11 Si 0.982 3.018 12 H -0.288 1.288 13 H -0.289 1.289 14 H -0.267 1.267 15 C 0.132 3.868 16 C 0.150 3.850 17 H 0.076 0.924 18 N -0.699 5.699 19 C 0.589 3.411 20 O -0.576 6.576 21 C -0.075 4.075 22 C -0.113 4.113 23 C -0.193 4.193 24 C 0.067 3.933 25 N -0.518 5.518 26 H 0.428 0.572 27 C -0.053 4.053 28 C -0.112 4.112 29 C -0.118 4.118 30 C -0.048 4.048 31 H 0.037 0.963 32 H 0.100 0.900 33 H 0.065 0.935 34 H 0.017 0.983 35 H 0.025 0.975 36 H 0.249 0.751 37 H 0.044 0.956 38 H 0.035 0.965 39 H 0.410 0.590 40 H 0.134 0.866 41 H 0.095 0.905 42 H 0.094 0.906 43 H 0.092 0.908 44 H 0.064 0.936 45 H 0.063 0.937 46 H 0.081 0.919 47 H 0.072 0.928 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.260 1.277 28.522 29.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.317 6.317 3 C 0.018 3.982 4 H 0.116 0.884 5 C 0.049 3.951 6 N -0.349 5.349 7 C -0.376 4.376 8 H 0.101 0.899 9 C -0.255 4.255 10 N -0.597 5.597 11 Si 0.810 3.190 12 H -0.215 1.215 13 H -0.216 1.216 14 H -0.192 1.192 15 C 0.005 3.995 16 C 0.044 3.956 17 H 0.095 0.905 18 N -0.350 5.350 19 C 0.379 3.621 20 O -0.455 6.455 21 C -0.188 4.188 22 C -0.141 4.141 23 C -0.198 4.198 24 C -0.053 4.053 25 N -0.114 5.114 26 H 0.268 0.732 27 C -0.091 4.091 28 C -0.150 4.150 29 C -0.155 4.155 30 C -0.086 4.086 31 H 0.056 0.944 32 H 0.118 0.882 33 H 0.083 0.917 34 H 0.036 0.964 35 H 0.043 0.957 36 H 0.059 0.941 37 H 0.061 0.939 38 H 0.053 0.947 39 H 0.246 0.754 40 H 0.152 0.848 41 H 0.113 0.887 42 H 0.113 0.887 43 H 0.110 0.890 44 H 0.083 0.917 45 H 0.081 0.919 46 H 0.099 0.901 47 H 0.090 0.910 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -6.618 0.768 27.863 28.649 hybrid contribution -0.136 0.559 -1.849 1.937 sum -6.754 1.327 26.014 26.909 Atomic orbital electron populations 1.23002 0.79220 1.03944 1.00843 1.87909 1.21874 1.26979 1.94926 1.23503 0.93437 0.85300 0.95958 0.88390 1.21283 0.87226 0.94736 0.91810 1.44517 1.22089 1.66298 1.01978 1.19448 1.02779 1.29511 0.85888 0.89932 1.25692 0.98459 1.01405 0.99988 1.70156 1.20565 1.48291 1.20724 0.85027 0.77296 0.78087 0.78589 1.21481 1.21564 1.19204 1.21913 0.97295 0.95578 0.84712 1.21882 0.96011 0.98647 0.79106 0.90535 1.45483 1.25416 1.58666 1.05466 1.17405 0.82157 0.77809 0.84725 1.90830 1.31727 1.43943 1.79047 1.19949 0.95525 1.12382 0.90900 1.21161 0.99432 1.01984 0.91484 1.19590 0.97356 1.07286 0.95616 1.21072 0.98279 1.02485 0.83442 1.41645 1.19805 1.43480 1.06513 0.73215 1.20518 0.97426 1.00510 0.90620 1.21546 0.96056 1.01734 0.95621 1.21602 0.95252 0.99315 0.99338 1.20132 0.99344 1.00142 0.88997 0.94426 0.88194 0.91654 0.96435 0.95668 0.94133 0.93869 0.94655 0.75390 0.84791 0.88702 0.88736 0.88997 0.91689 0.91858 0.90081 0.90982 0.91327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.67 10.85 113.37 1.23 1.90 16 2 O -0.40 -14.55 10.44 -148.98 -1.56 -16.11 16 3 C 0.08 2.90 3.09 31.78 0.10 2.99 16 4 H 0.10 2.95 7.68 -2.39 -0.02 2.93 16 5 C 0.18 8.82 5.15 86.73 0.45 9.27 16 6 N -0.62 -33.13 3.39 -691.99 -2.35 -35.48 16 7 C -0.25 -14.32 10.28 84.03 0.86 -13.46 16 8 H 0.08 4.60 7.83 -2.91 -0.02 4.58 16 9 C -0.06 -3.60 5.49 84.86 0.47 -3.14 16 10 N -0.95 -57.55 10.31 21.65 0.22 -57.33 16 11 Si 0.98 46.56 29.55 68.60 2.03 48.59 16 12 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 13 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 14 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 15 C 0.13 5.79 6.93 86.86 0.60 6.39 16 16 C 0.15 5.80 3.15 46.39 0.15 5.95 16 17 H 0.08 3.52 7.53 -2.39 -0.02 3.50 16 18 N -0.70 -20.59 5.19 -439.91 -2.28 -22.87 16 19 C 0.59 19.60 7.79 86.45 0.67 20.27 16 20 O -0.58 -24.76 16.52 -4.33 -0.07 -24.83 16 21 C -0.08 -1.98 7.06 40.37 0.29 -1.70 16 22 C -0.11 -2.99 10.62 22.47 0.24 -2.75 16 23 C -0.19 -3.86 5.91 -20.11 -0.12 -3.98 16 24 C 0.07 1.07 7.02 41.62 0.29 1.37 16 25 N -0.52 -9.02 5.98 -171.31 -1.02 -10.05 16 26 H 0.43 4.68 8.19 -92.71 -0.76 3.92 16 27 C -0.05 -0.43 6.30 30.06 0.19 -0.24 16 28 C -0.11 -0.80 5.89 30.74 0.18 -0.62 16 29 C -0.12 -1.10 5.90 30.75 0.18 -0.92 16 30 C -0.05 -0.70 6.28 30.01 0.19 -0.51 16 31 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 33 H 0.06 1.28 8.11 -2.39 -0.02 1.26 16 34 H 0.02 1.02 7.30 -2.39 -0.02 1.01 16 35 H 0.03 1.36 7.51 -2.38 -0.02 1.35 16 36 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 37 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.41 8.51 7.70 -92.71 -0.71 7.79 16 40 H 0.13 3.73 8.06 -2.91 -0.02 3.71 16 41 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 42 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 43 H 0.09 0.32 8.14 -2.39 -0.02 0.30 16 44 H 0.06 0.54 8.11 -2.39 -0.02 0.52 16 45 H 0.06 0.63 8.11 -2.39 -0.02 0.61 16 46 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 47 H 0.07 0.98 8.14 -2.39 -0.02 0.97 16 48 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -79.31 386.27 0.43 -78.88 By element: Atomic # 1 Polarization: 18.87 SS G_CDS: -0.49 Total: 18.38 kcal Atomic # 6 Polarization: 14.86 SS G_CDS: 5.96 Total: 20.82 kcal Atomic # 7 Polarization: -120.29 SS G_CDS: -5.44 Total: -125.72 kcal Atomic # 8 Polarization: -39.31 SS G_CDS: -1.63 Total: -40.93 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 2.03 Total: 48.59 kcal Total: -79.31 0.43 -78.88 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082304590.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.166 kcal (2) G-P(sol) polarization free energy of solvation -79.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds