Wall clock time and date at job start Tue Mar 31 2020 17:57:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42897 * 114.00485 * 2 1 4 4 H 1.09000 * 110.88414 * 32.42243 * 3 2 1 5 5 C 1.54914 * 111.00144 * 268.54653 * 3 2 1 6 6 N 1.47426 * 104.82992 * 204.87916 * 5 3 2 7 7 C 1.36936 * 125.64483 * 204.16378 * 6 5 3 8 8 H 1.08004 * 119.99836 * 179.97438 * 7 6 5 9 9 C 1.38815 * 120.00358 * 359.95842 * 7 6 5 10 10 N 1.31619 * 119.99732 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 120.00198 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.46968 * 0.02562 * 11 9 7 13 13 H 1.48502 * 109.47014 * 119.99939 * 11 9 7 14 14 H 1.48497 * 109.46957 * 239.99998 * 11 9 7 15 15 C 1.47018 * 108.70517 * 24.12623 * 6 5 3 16 16 C 1.54325 * 107.40412 * 358.86539 * 15 6 5 17 17 H 1.09000 * 110.72188 * 96.24097 * 16 15 6 18 18 N 1.46495 * 110.72250 * 219.52320 * 16 15 6 19 19 C 1.34776 * 119.99803 * 273.54657 * 18 16 15 20 20 O 1.21630 * 120.00196 * 359.97438 * 19 18 16 21 21 C 1.47268 * 120.00031 * 180.02562 * 19 18 16 22 22 C 1.46740 * 126.92455 * 179.97438 * 21 19 18 23 23 C 1.34067 * 106.31319 * 179.97438 * 22 21 19 24 24 N 1.37079 * 109.03718 * 0.03689 * 23 22 21 25 25 C 1.34577 * 109.95360 * 359.67060 * 24 23 22 26 26 C 1.47039 * 123.95260 * 179.88186 * 24 23 22 27 27 C 1.53145 * 108.83395 * 342.46771 * 26 24 23 28 28 C 1.53120 * 109.59602 * 51.20460 * 27 26 24 29 29 C 1.51090 * 126.73004 * 180.02562 * 23 22 21 30 30 H 1.09002 * 109.46858 * 300.00860 * 1 2 3 31 31 H 1.09006 * 109.47103 * 59.99918 * 1 2 3 32 32 H 1.08998 * 109.47560 * 180.02562 * 1 2 3 33 33 H 1.08999 * 110.37121 * 86.03651 * 5 3 2 34 34 H 1.09003 * 110.36718 * 323.71555 * 5 3 2 35 35 H 0.96996 * 119.99954 * 180.02562 * 10 9 7 36 36 H 1.09002 * 109.88241 * 118.36067 * 15 6 5 37 37 H 1.09000 * 109.88049 * 239.37196 * 15 6 5 38 38 H 0.96997 * 120.00433 * 93.54551 * 18 16 15 39 39 H 1.08005 * 126.84358 * 359.97438 * 22 21 19 40 40 H 1.07999 * 125.72886 * 180.32654 * 25 24 23 41 41 H 1.08998 * 109.57627 * 102.27244 * 26 24 23 42 42 H 1.08996 * 109.57905 * 222.65947 * 26 24 23 43 43 H 1.09006 * 109.44732 * 171.24659 * 27 26 24 44 44 H 1.09007 * 109.45165 * 291.19051 * 27 26 24 45 45 H 1.09004 * 109.52396 * 49.73834 * 28 27 26 46 46 H 1.09007 * 109.52627 * 169.86827 * 28 27 26 47 47 H 1.08998 * 109.71882 * 283.91205 * 29 23 22 48 48 H 1.09002 * 109.71889 * 44.56398 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3831 2.0100 0.5460 5 6 2.2697 1.7976 -1.4458 6 7 3.3607 2.7811 -1.3195 7 6 3.6220 3.8001 -2.1962 8 1 4.4485 4.4708 -2.0137 9 6 2.8247 3.9707 -3.3197 10 7 1.8173 3.1534 -3.5420 11 14 3.1807 5.3612 -4.5152 12 1 4.3580 6.1322 -4.0413 13 1 3.4671 4.7975 -5.8589 14 1 2.0005 6.2587 -4.5962 15 6 4.1211 2.4872 -0.0961 16 6 3.4498 1.2760 0.5850 17 1 3.9572 0.3504 0.3130 18 7 3.4250 1.4472 2.0397 19 6 4.4818 1.0609 2.7817 20 8 5.4557 0.5698 2.2436 21 6 4.4567 1.2324 4.2441 22 6 5.5151 0.8675 5.1928 23 6 5.0621 1.2023 6.4094 24 7 3.8088 1.7437 6.2865 25 6 3.4448 1.7699 4.9911 26 6 3.0058 2.2217 7.4217 27 6 3.5752 1.6296 8.7142 28 6 5.0828 1.8899 8.7777 29 6 5.7869 1.0262 7.7234 30 1 -0.3633 0.5140 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.3761 2.2723 -1.8510 34 1 2.5795 0.9667 -2.0796 35 1 1.2604 3.2724 -4.3272 36 1 5.1530 2.2447 -0.3502 37 1 4.0965 3.3485 0.5715 38 1 2.6482 1.8385 2.4689 39 1 6.4689 0.4187 4.9577 40 1 2.5095 2.1489 4.6064 41 1 3.0501 3.3098 7.4679 42 1 1.9713 1.9014 7.2980 43 1 3.0899 2.0959 9.5717 44 1 3.3916 0.5553 8.7330 45 1 5.2794 2.9432 8.5772 46 1 5.4556 1.6320 9.7691 47 1 5.7542 -0.0210 8.0239 48 1 6.8232 1.3470 7.6177 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001082402237.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:32 Heat of formation + Delta-G solvation = -4.819393 kcal Electronic energy + Delta-G solvation = -28769.727528 eV Core-core repulsion = 24826.209382 eV Total energy + Delta-G solvation = -3943.518146 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.66939 -39.29730 -37.85947 -36.14194 -35.78271 -33.87755 -32.97311 -31.76698 -29.88285 -28.62020 -27.71820 -26.95074 -26.06579 -24.86694 -24.05088 -22.56174 -21.82192 -20.56643 -20.05650 -19.46475 -18.81026 -17.50908 -16.96229 -16.44241 -16.12458 -15.81558 -15.35753 -14.86648 -14.64979 -14.48687 -14.36006 -14.24061 -14.06636 -13.97877 -13.77305 -13.47150 -13.16791 -12.90622 -12.59620 -12.31651 -12.16352 -11.92541 -11.73320 -11.54657 -11.37475 -11.34698 -11.23894 -11.19017 -10.96945 -10.81610 -10.71534 -10.12493 -9.83300 -9.75188 -9.59630 -8.95969 -8.68992 -8.66628 -8.50699 -8.22141 -6.84799 -5.65922 -3.08297 1.79357 2.36888 2.59710 3.40607 3.46417 3.48889 3.56844 3.84577 4.05444 4.18017 4.19772 4.26871 4.49622 4.54187 4.73202 4.81425 4.90163 5.02055 5.17178 5.21294 5.27745 5.31614 5.40465 5.46261 5.49254 5.56282 5.58701 5.67456 5.71252 5.75009 5.76373 5.90686 5.97902 6.00483 6.03808 6.18126 6.29858 6.63389 6.72012 6.80419 6.95238 7.03768 7.10985 7.31720 7.60796 7.76848 7.83176 7.95539 8.31018 8.70140 9.20348 9.80691 10.43927 11.38068 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.017148 B = 0.002530 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.462698 B =11065.090044 C =11666.069408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.381 6.381 3 C 0.055 3.945 4 H 0.065 0.935 5 C 0.140 3.860 6 N -0.601 5.601 7 C -0.218 4.218 8 H 0.081 0.919 9 C -0.013 4.013 10 N -0.924 5.924 11 Si 0.916 3.084 12 H -0.279 1.279 13 H -0.290 1.290 14 H -0.291 1.291 15 C 0.130 3.870 16 C 0.141 3.859 17 H 0.101 0.899 18 N -0.716 5.716 19 C 0.588 3.412 20 O -0.544 6.544 21 C -0.218 4.218 22 C -0.135 4.135 23 C 0.007 3.993 24 N -0.441 5.441 25 C 0.046 3.954 26 C 0.101 3.899 27 C -0.134 4.134 28 C -0.125 4.125 29 C -0.050 4.050 30 H 0.032 0.968 31 H 0.047 0.953 32 H 0.078 0.922 33 H 0.112 0.888 34 H 0.026 0.974 35 H 0.252 0.748 36 H 0.034 0.966 37 H 0.030 0.970 38 H 0.392 0.608 39 H 0.147 0.853 40 H 0.167 0.833 41 H 0.082 0.918 42 H 0.089 0.911 43 H 0.085 0.915 44 H 0.074 0.926 45 H 0.068 0.932 46 H 0.075 0.925 47 H 0.080 0.920 48 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.640 -3.348 26.835 27.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.299 6.299 3 C -0.005 4.005 4 H 0.082 0.918 5 C 0.014 3.986 6 N -0.329 5.329 7 C -0.346 4.346 8 H 0.098 0.902 9 C -0.208 4.208 10 N -0.573 5.573 11 Si 0.747 3.253 12 H -0.205 1.205 13 H -0.217 1.217 14 H -0.218 1.218 15 C 0.003 3.997 16 C 0.036 3.964 17 H 0.119 0.881 18 N -0.366 5.366 19 C 0.376 3.624 20 O -0.422 6.422 21 C -0.229 4.229 22 C -0.159 4.159 23 C -0.101 4.101 24 N -0.119 5.119 25 C -0.089 4.089 26 C -0.020 4.020 27 C -0.171 4.171 28 C -0.163 4.163 29 C -0.088 4.088 30 H 0.051 0.949 31 H 0.066 0.934 32 H 0.096 0.904 33 H 0.129 0.871 34 H 0.044 0.956 35 H 0.063 0.937 36 H 0.052 0.948 37 H 0.048 0.952 38 H 0.226 0.774 39 H 0.165 0.835 40 H 0.185 0.815 41 H 0.101 0.899 42 H 0.107 0.893 43 H 0.104 0.896 44 H 0.093 0.907 45 H 0.087 0.913 46 H 0.094 0.906 47 H 0.098 0.902 48 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -1.089 -3.671 26.536 26.810 hybrid contribution -0.589 1.149 -0.530 1.396 sum -1.678 -2.522 26.006 26.182 Atomic orbital electron populations 1.22686 0.81696 1.01829 0.99941 1.87848 1.19142 1.27775 1.95127 1.24068 0.92251 0.83653 1.00497 0.91752 1.22318 0.95314 0.91891 0.89049 1.44325 1.31926 1.33057 1.23590 1.19158 1.10999 1.03971 1.00520 0.90157 1.24802 0.98139 0.99387 0.98448 1.69766 1.20111 1.38677 1.28742 0.85959 0.77356 0.81109 0.80870 1.20467 1.21697 1.21786 1.21619 0.95259 0.93757 0.89035 1.22088 0.96150 1.00144 0.78016 0.88142 1.45812 1.19064 1.64240 1.07465 1.17386 0.82473 0.77322 0.85198 1.90764 1.33242 1.44821 1.73377 1.20477 0.97235 1.12480 0.92707 1.21542 0.99552 1.05145 0.89705 1.20275 0.86943 1.06368 0.96483 1.43851 1.14181 1.47854 1.05974 1.21761 1.00188 1.04160 0.82758 1.22077 0.95179 0.99904 0.84829 1.21844 0.96773 1.02291 0.96234 1.21642 0.94467 1.00675 0.99509 1.20340 0.98650 1.00661 0.89153 0.94924 0.93442 0.90390 0.87069 0.95578 0.93724 0.94778 0.95247 0.77404 0.83549 0.81541 0.89938 0.89283 0.89644 0.90680 0.91305 0.90637 0.90196 0.89574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.52 10.89 101.05 1.10 1.62 16 2 O -0.38 -7.20 10.52 -35.23 -0.37 -7.57 16 3 C 0.05 1.09 3.11 -24.44 -0.08 1.01 16 4 H 0.06 1.18 7.76 -51.93 -0.40 0.78 16 5 C 0.14 3.49 5.63 -2.53 -0.01 3.47 16 6 N -0.60 -15.90 3.39 -170.07 -0.58 -16.47 16 7 C -0.22 -6.19 10.27 -15.06 -0.15 -6.35 16 8 H 0.08 2.22 7.83 -52.48 -0.41 1.81 16 9 C -0.01 -0.36 5.49 -17.43 -0.10 -0.45 16 10 N -0.92 -26.95 10.09 55.49 0.56 -26.39 16 11 Si 0.92 22.26 29.55 -169.99 -5.02 17.24 16 12 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 13 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 14 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 15 C 0.13 2.99 6.98 -3.07 -0.02 2.97 16 16 C 0.14 2.83 2.99 -65.96 -0.20 2.64 16 17 H 0.10 2.23 7.70 -51.93 -0.40 1.83 16 18 N -0.72 -11.91 5.12 -53.02 -0.27 -12.18 16 19 C 0.59 10.51 7.81 -12.59 -0.10 10.41 16 20 O -0.54 -11.91 16.70 5.25 0.09 -11.82 16 21 C -0.22 -3.18 6.29 -103.32 -0.65 -3.83 16 22 C -0.14 -1.82 10.88 -37.62 -0.41 -2.22 16 23 C 0.01 0.07 6.53 -81.52 -0.53 -0.46 16 24 N -0.44 -4.18 3.11 -111.86 -0.35 -4.53 16 25 C 0.05 0.51 10.90 -16.88 -0.18 0.32 16 26 C 0.10 0.57 6.89 -3.67 -0.03 0.54 16 27 C -0.13 -0.59 5.91 -26.59 -0.16 -0.74 16 28 C -0.13 -0.62 5.96 -26.46 -0.16 -0.78 16 29 C -0.05 -0.35 6.26 -27.48 -0.17 -0.52 16 30 H 0.03 0.41 8.11 -51.93 -0.42 -0.01 16 31 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.11 3.02 5.87 -51.93 -0.30 2.71 16 34 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 36 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.03 0.66 8.03 -51.93 -0.42 0.24 16 38 H 0.39 5.28 7.46 -40.82 -0.30 4.97 16 39 H 0.15 1.94 8.06 -52.48 -0.42 1.52 16 40 H 0.17 1.36 7.45 -52.49 -0.39 0.96 16 41 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 42 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.09 0.22 8.14 -51.93 -0.42 -0.21 16 44 H 0.07 0.37 8.11 -51.93 -0.42 -0.05 16 45 H 0.07 0.37 8.12 -51.93 -0.42 -0.05 16 46 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 47 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 48 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 LS Contribution 386.82 15.07 5.83 5.83 Total: -1.00 -35.39 386.82 -9.64 -45.03 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -7.68 Total: 3.23 kcal Atomic # 6 Polarization: 9.48 SS G_CDS: -1.84 Total: 7.63 kcal Atomic # 7 Polarization: -58.93 SS G_CDS: -0.64 Total: -59.56 kcal Atomic # 8 Polarization: -19.11 SS G_CDS: -0.28 Total: -19.39 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -35.39 -9.64 -45.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082402237.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.206 kcal (2) G-P(sol) polarization free energy of solvation -35.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds