Wall clock time and date at job start Tue Mar 31 2020 17:57:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42897 * 114.00485 * 2 1 4 4 H 1.09000 * 110.88414 * 32.42243 * 3 2 1 5 5 C 1.54914 * 111.00144 * 268.54653 * 3 2 1 6 6 N 1.47426 * 104.82992 * 204.87916 * 5 3 2 7 7 C 1.36936 * 125.64483 * 204.16378 * 6 5 3 8 8 H 1.08004 * 119.99836 * 179.97438 * 7 6 5 9 9 C 1.38815 * 120.00358 * 359.95842 * 7 6 5 10 10 N 1.31619 * 119.99732 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 120.00198 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.46968 * 0.02562 * 11 9 7 13 13 H 1.48502 * 109.47014 * 119.99939 * 11 9 7 14 14 H 1.48497 * 109.46957 * 239.99998 * 11 9 7 15 15 C 1.47018 * 108.70517 * 24.12623 * 6 5 3 16 16 C 1.54325 * 107.40412 * 358.86539 * 15 6 5 17 17 H 1.09000 * 110.72188 * 96.24097 * 16 15 6 18 18 N 1.46495 * 110.72250 * 219.52320 * 16 15 6 19 19 C 1.34776 * 119.99803 * 273.54657 * 18 16 15 20 20 O 1.21630 * 120.00196 * 359.97438 * 19 18 16 21 21 C 1.47268 * 120.00031 * 180.02562 * 19 18 16 22 22 C 1.46740 * 126.92455 * 179.97438 * 21 19 18 23 23 C 1.34067 * 106.31319 * 179.97438 * 22 21 19 24 24 N 1.37079 * 109.03718 * 0.03689 * 23 22 21 25 25 C 1.34577 * 109.95360 * 359.67060 * 24 23 22 26 26 C 1.47039 * 123.95260 * 179.88186 * 24 23 22 27 27 C 1.53145 * 108.83395 * 342.46771 * 26 24 23 28 28 C 1.53120 * 109.59602 * 51.20460 * 27 26 24 29 29 C 1.51090 * 126.73004 * 180.02562 * 23 22 21 30 30 H 1.09002 * 109.46858 * 300.00860 * 1 2 3 31 31 H 1.09006 * 109.47103 * 59.99918 * 1 2 3 32 32 H 1.08998 * 109.47560 * 180.02562 * 1 2 3 33 33 H 1.08999 * 110.37121 * 86.03651 * 5 3 2 34 34 H 1.09003 * 110.36718 * 323.71555 * 5 3 2 35 35 H 0.96996 * 119.99954 * 180.02562 * 10 9 7 36 36 H 1.09002 * 109.88241 * 118.36067 * 15 6 5 37 37 H 1.09000 * 109.88049 * 239.37196 * 15 6 5 38 38 H 0.96997 * 120.00433 * 93.54551 * 18 16 15 39 39 H 1.08005 * 126.84358 * 359.97438 * 22 21 19 40 40 H 1.07999 * 125.72886 * 180.32654 * 25 24 23 41 41 H 1.08998 * 109.57627 * 102.27244 * 26 24 23 42 42 H 1.08996 * 109.57905 * 222.65947 * 26 24 23 43 43 H 1.09006 * 109.44732 * 171.24659 * 27 26 24 44 44 H 1.09007 * 109.45165 * 291.19051 * 27 26 24 45 45 H 1.09004 * 109.52396 * 49.73834 * 28 27 26 46 46 H 1.09007 * 109.52627 * 169.86827 * 28 27 26 47 47 H 1.08998 * 109.71882 * 283.91205 * 29 23 22 48 48 H 1.09002 * 109.71889 * 44.56398 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3831 2.0100 0.5460 5 6 2.2697 1.7976 -1.4458 6 7 3.3607 2.7811 -1.3195 7 6 3.6220 3.8001 -2.1962 8 1 4.4485 4.4708 -2.0137 9 6 2.8247 3.9707 -3.3197 10 7 1.8173 3.1534 -3.5420 11 14 3.1807 5.3612 -4.5152 12 1 4.3580 6.1322 -4.0413 13 1 3.4671 4.7975 -5.8589 14 1 2.0005 6.2587 -4.5962 15 6 4.1211 2.4872 -0.0961 16 6 3.4498 1.2760 0.5850 17 1 3.9572 0.3504 0.3130 18 7 3.4250 1.4472 2.0397 19 6 4.4818 1.0609 2.7817 20 8 5.4557 0.5698 2.2436 21 6 4.4567 1.2324 4.2441 22 6 5.5151 0.8675 5.1928 23 6 5.0621 1.2023 6.4094 24 7 3.8088 1.7437 6.2865 25 6 3.4448 1.7699 4.9911 26 6 3.0058 2.2217 7.4217 27 6 3.5752 1.6296 8.7142 28 6 5.0828 1.8899 8.7777 29 6 5.7869 1.0262 7.7234 30 1 -0.3633 0.5140 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.3761 2.2723 -1.8510 34 1 2.5795 0.9667 -2.0796 35 1 1.2604 3.2724 -4.3272 36 1 5.1530 2.2447 -0.3502 37 1 4.0965 3.3485 0.5715 38 1 2.6482 1.8385 2.4689 39 1 6.4689 0.4187 4.9577 40 1 2.5095 2.1489 4.6064 41 1 3.0501 3.3098 7.4679 42 1 1.9713 1.9014 7.2980 43 1 3.0899 2.0959 9.5717 44 1 3.3916 0.5553 8.7330 45 1 5.2794 2.9432 8.5772 46 1 5.4556 1.6320 9.7691 47 1 5.7542 -0.0210 8.0239 48 1 6.8232 1.3470 7.6177 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001082402237.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:32 Heat of formation + Delta-G solvation = -28.931845 kcal Electronic energy + Delta-G solvation = -28770.773122 eV Core-core repulsion = 24826.209382 eV Total energy + Delta-G solvation = -3944.563740 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.48883 -40.82105 -39.40131 -37.50748 -36.68200 -35.57867 -33.69516 -33.63195 -31.09521 -30.18241 -28.75915 -28.31421 -27.53575 -26.24283 -25.16579 -23.71170 -22.44597 -22.35831 -21.72859 -20.72357 -19.60888 -19.09210 -18.22842 -17.93821 -17.28155 -17.06716 -16.50894 -16.49065 -15.91719 -15.77734 -15.60315 -15.33641 -15.07292 -14.97203 -14.71910 -14.59910 -14.38995 -14.37557 -13.95020 -13.73829 -13.46688 -13.21710 -13.19008 -12.96174 -12.75750 -12.58627 -12.41717 -12.32765 -12.01412 -11.91903 -11.91445 -11.76155 -11.68302 -11.54068 -11.08567 -10.81197 -10.53985 -10.15116 -9.50454 -9.11184 -8.98002 -7.81447 -5.28795 0.76554 1.44368 1.46658 1.48566 1.59052 1.87909 2.17774 2.44732 2.58482 2.74699 3.29308 3.58684 3.62407 3.72108 3.78216 3.85060 3.93480 3.97467 4.06403 4.11024 4.19890 4.36277 4.43444 4.47688 4.51322 4.55574 4.58680 4.61623 4.67653 4.84791 4.86426 4.89072 4.91974 4.93146 5.01698 5.09186 5.13230 5.20958 5.29260 5.34627 5.43908 5.47807 5.67257 5.77942 6.08653 6.18204 6.31343 6.35853 6.65541 7.04260 7.34729 7.68074 8.31287 9.20406 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.017148 B = 0.002530 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.462698 B =11065.090044 C =11666.069408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.397 6.397 3 C 0.080 3.920 4 H 0.092 0.908 5 C 0.145 3.855 6 N -0.618 5.618 7 C -0.243 4.243 8 H 0.081 0.919 9 C -0.062 4.062 10 N -0.947 5.947 11 Si 0.986 3.014 12 H -0.269 1.269 13 H -0.293 1.293 14 H -0.284 1.284 15 C 0.133 3.867 16 C 0.156 3.844 17 H 0.074 0.926 18 N -0.700 5.700 19 C 0.586 3.414 20 O -0.598 6.598 21 C -0.262 4.262 22 C -0.176 4.176 23 C 0.020 3.980 24 N -0.435 5.435 25 C 0.070 3.930 26 C 0.091 3.909 27 C -0.131 4.131 28 C -0.123 4.123 29 C -0.053 4.053 30 H 0.062 0.938 31 H 0.035 0.965 32 H 0.103 0.897 33 H 0.090 0.910 34 H -0.012 1.012 35 H 0.250 0.750 36 H 0.012 0.988 37 H 0.040 0.960 38 H 0.412 0.588 39 H 0.130 0.870 40 H 0.201 0.799 41 H 0.098 0.902 42 H 0.110 0.890 43 H 0.112 0.888 44 H 0.071 0.929 45 H 0.065 0.935 46 H 0.094 0.906 47 H 0.089 0.911 48 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.625 -2.044 30.235 30.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.315 6.315 3 C 0.020 3.980 4 H 0.110 0.890 5 C 0.020 3.980 6 N -0.346 5.346 7 C -0.371 4.371 8 H 0.099 0.901 9 C -0.255 4.255 10 N -0.597 5.597 11 Si 0.813 3.187 12 H -0.193 1.193 13 H -0.220 1.220 14 H -0.211 1.211 15 C 0.006 3.994 16 C 0.050 3.950 17 H 0.092 0.908 18 N -0.351 5.351 19 C 0.377 3.623 20 O -0.480 6.480 21 C -0.272 4.272 22 C -0.199 4.199 23 C -0.089 4.089 24 N -0.110 5.110 25 C -0.067 4.067 26 C -0.028 4.028 27 C -0.169 4.169 28 C -0.160 4.160 29 C -0.091 4.091 30 H 0.081 0.919 31 H 0.054 0.946 32 H 0.121 0.879 33 H 0.108 0.892 34 H 0.006 0.994 35 H 0.060 0.940 36 H 0.030 0.970 37 H 0.058 0.942 38 H 0.249 0.751 39 H 0.148 0.852 40 H 0.218 0.782 41 H 0.116 0.884 42 H 0.128 0.872 43 H 0.130 0.870 44 H 0.090 0.910 45 H 0.084 0.916 46 H 0.113 0.887 47 H 0.107 0.893 48 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -3.110 -2.357 30.006 30.259 hybrid contribution 0.015 0.703 -1.510 1.665 sum -3.095 -1.654 28.496 28.712 Atomic orbital electron populations 1.22980 0.79226 1.03892 1.00794 1.87842 1.21825 1.26813 1.95011 1.23639 0.92528 0.84797 0.97017 0.89043 1.22101 0.93823 0.90220 0.91903 1.44574 1.32837 1.32881 1.24317 1.19487 1.11361 1.04698 1.01550 0.90127 1.25667 0.97996 1.01838 0.99998 1.69991 1.20684 1.40003 1.28990 0.84910 0.77592 0.78157 0.78023 1.19330 1.21974 1.21055 1.21648 0.94094 0.95278 0.88373 1.21595 0.95813 0.97565 0.80029 0.90797 1.45525 1.19768 1.64162 1.05664 1.17942 0.81584 0.76053 0.86679 1.90726 1.35243 1.47380 1.74638 1.20256 0.99678 1.16406 0.90863 1.21606 0.99627 1.07481 0.91230 1.20667 0.87239 1.04218 0.96763 1.44222 1.13971 1.46256 1.06580 1.22130 0.99968 1.01600 0.83034 1.22514 0.95671 1.00913 0.83704 1.21884 0.96266 1.02276 0.96450 1.21656 0.94906 0.99914 0.99545 1.20500 0.98694 1.01845 0.88049 0.91918 0.94641 0.87859 0.89177 0.99436 0.93969 0.97043 0.94212 0.75098 0.85178 0.78222 0.88424 0.87151 0.87010 0.91048 0.91583 0.88741 0.89299 0.89358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.74 10.89 113.37 1.23 1.98 16 2 O -0.40 -14.77 10.52 -148.98 -1.57 -16.34 16 3 C 0.08 3.17 3.11 32.08 0.10 3.27 16 4 H 0.09 3.16 7.76 -2.39 -0.02 3.14 16 5 C 0.15 7.52 5.63 86.86 0.49 8.00 16 6 N -0.62 -33.80 3.39 -691.97 -2.35 -36.15 16 7 C -0.24 -14.08 10.27 84.03 0.86 -13.22 16 8 H 0.08 4.54 7.83 -2.91 -0.02 4.52 16 9 C -0.06 -3.58 5.49 84.86 0.47 -3.12 16 10 N -0.95 -56.54 10.09 21.65 0.22 -56.32 16 11 Si 0.99 46.16 29.55 68.60 2.03 48.19 16 12 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 13 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 14 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 15 C 0.13 6.31 6.98 86.73 0.61 6.91 16 16 C 0.16 6.45 2.99 46.27 0.14 6.59 16 17 H 0.07 3.47 7.70 -2.39 -0.02 3.45 16 18 N -0.70 -23.11 5.12 -439.91 -2.25 -25.37 16 19 C 0.59 21.58 7.81 86.62 0.68 22.26 16 20 O -0.60 -27.90 16.70 -4.13 -0.07 -27.97 16 21 C -0.26 -7.60 6.29 -19.02 -0.12 -7.72 16 22 C -0.18 -4.86 10.88 23.54 0.26 -4.60 16 23 C 0.02 0.39 6.53 40.91 0.27 0.66 16 24 N -0.43 -6.96 3.11 -507.83 -1.58 -8.54 16 25 C 0.07 1.36 10.90 83.93 0.91 2.27 16 26 C 0.09 0.62 6.89 86.33 0.59 1.22 16 27 C -0.13 -0.59 5.91 30.68 0.18 -0.41 16 28 C -0.12 -0.80 5.96 30.77 0.18 -0.62 16 29 C -0.05 -0.63 6.26 30.11 0.19 -0.45 16 30 H 0.06 1.37 8.11 -2.39 -0.02 1.35 16 31 H 0.03 1.06 8.14 -2.38 -0.02 1.04 16 32 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 33 H 0.09 5.05 5.87 -2.39 -0.01 5.04 16 34 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 35 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 36 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 37 H 0.04 1.80 8.03 -2.39 -0.02 1.78 16 38 H 0.41 10.18 7.46 -92.71 -0.69 9.49 16 39 H 0.13 3.83 8.06 -2.91 -0.02 3.80 16 40 H 0.20 2.39 7.45 -2.91 -0.02 2.37 16 41 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 42 H 0.11 0.37 8.14 -2.39 -0.02 0.35 16 43 H 0.11 -0.01 8.14 -2.38 -0.02 -0.03 16 44 H 0.07 0.42 8.11 -2.38 -0.02 0.40 16 45 H 0.07 0.50 8.12 -2.38 -0.02 0.48 16 46 H 0.09 0.30 8.14 -2.38 -0.02 0.28 16 47 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 48 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 Total: -1.00 -82.25 386.82 1.73 -80.52 By element: Atomic # 1 Polarization: 18.67 SS G_CDS: 0.27 Total: 18.94 kcal Atomic # 6 Polarization: 16.00 SS G_CDS: 7.04 Total: 23.04 kcal Atomic # 7 Polarization: -120.42 SS G_CDS: -5.96 Total: -126.38 kcal Atomic # 8 Polarization: -42.67 SS G_CDS: -1.64 Total: -44.31 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.19 kcal Total: -82.25 1.73 -80.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001082402237.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.588 kcal (2) G-P(sol) polarization free energy of solvation -82.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds