Wall clock time and date at job start Tue Mar 31 2020 17:50:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42889 * 1 3 3 C 1.42907 * 114.00144 * 2 1 4 4 C 1.50703 * 109.47080 * 180.02562 * 3 2 1 5 5 C 1.38352 * 120.34723 * 270.02311 * 4 3 2 6 6 N 1.31922 * 121.08311 * 179.97438 * 5 4 3 7 7 C 1.31695 * 121.87784 * 359.74933 * 6 5 4 8 8 C 1.39524 * 120.56497 * 0.53641 * 7 6 5 9 9 C 1.47843 * 120.55977 * 179.72143 * 8 7 6 10 10 O 1.21547 * 119.99901 * 179.72028 * 9 8 7 11 11 N 1.34769 * 119.99669 * 359.72961 * 9 8 7 12 12 C 1.46505 * 119.99798 * 179.97438 * 11 9 8 13 13 H 1.09002 * 109.47068 * 34.99973 * 12 11 9 14 14 C 1.52997 * 109.47212 * 274.99913 * 12 11 9 15 15 C 1.52992 * 109.47482 * 179.97438 * 14 12 11 16 16 C 1.53002 * 109.47106 * 60.00162 * 15 14 12 17 17 C 1.53002 * 109.47128 * 300.00123 * 16 15 14 18 18 C 1.52997 * 109.46978 * 59.99726 * 17 16 15 19 19 H 1.09002 * 109.47497 * 60.00450 * 18 17 16 20 20 N 1.46507 * 109.47235 * 180.02562 * 18 17 16 21 21 C 1.36936 * 119.99663 * 275.00138 * 20 18 17 22 22 H 1.07998 * 120.00133 * 359.97438 * 21 20 18 23 23 C 1.38811 * 119.99967 * 180.02562 * 21 20 18 24 24 N 1.31621 * 119.99860 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 120.00257 * 180.02562 * 23 21 20 26 26 H 1.48506 * 109.46920 * 359.97438 * 25 23 21 27 27 H 1.48509 * 109.47210 * 119.99507 * 25 23 21 28 28 H 1.48492 * 109.47349 * 239.99702 * 25 23 21 29 29 C 1.38354 * 120.35180 * 89.99930 * 4 3 2 30 30 H 1.09000 * 109.47683 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47318 * 300.00047 * 1 2 3 32 32 H 1.09008 * 109.47677 * 59.99790 * 1 2 3 33 33 H 1.08994 * 109.46609 * 60.00564 * 3 2 1 34 34 H 1.08996 * 109.47069 * 299.99736 * 3 2 1 35 35 H 1.08004 * 119.46112 * 359.97438 * 5 4 3 36 36 H 1.08004 * 119.72084 * 180.26441 * 7 6 5 37 37 H 0.97005 * 120.00963 * 359.97438 * 11 9 8 38 38 H 1.09002 * 109.47153 * 300.00008 * 14 12 11 39 39 H 1.08998 * 109.47533 * 59.99637 * 14 12 11 40 40 H 1.09002 * 109.47103 * 300.00247 * 15 14 12 41 41 H 1.08996 * 109.47747 * 179.97438 * 15 14 12 42 42 H 1.08996 * 109.47407 * 180.02562 * 16 15 14 43 43 H 1.09002 * 109.47596 * 60.00070 * 16 15 14 44 44 H 1.09002 * 109.47097 * 299.99925 * 17 16 15 45 45 H 1.08998 * 109.47844 * 180.02562 * 17 16 15 46 46 H 0.96997 * 120.00022 * 95.00053 * 20 18 17 47 47 H 0.96998 * 119.99581 * 180.02562 * 24 23 21 48 48 H 1.08003 * 120.85210 * 0.02562 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 6 4.2098 1.1306 1.1930 6 7 5.5247 1.0258 1.2094 7 6 6.2315 0.9650 0.0998 8 6 5.6039 1.0212 -1.1451 9 6 6.3979 0.9591 -2.3906 10 8 5.8403 1.0039 -3.4697 11 7 7.7400 0.8527 -2.3295 12 6 8.5269 0.7906 -3.5638 13 1 8.0616 1.4189 -4.3233 14 6 8.5816 -0.6551 -4.0614 15 6 9.4028 -0.7200 -5.3507 16 6 10.8229 -0.2209 -5.0766 17 6 10.7682 1.2249 -4.5789 18 6 9.9470 1.2897 -3.2896 19 1 10.4126 0.6615 -2.5302 20 7 9.8940 2.6742 -2.8133 21 6 10.9075 3.1705 -2.0376 22 1 11.7455 2.5413 -1.7766 23 6 10.8571 4.4821 -1.5859 24 7 9.8355 5.2488 -1.9036 25 14 12.2399 5.1595 -0.5283 26 1 13.2631 4.1043 -0.3160 27 1 12.8617 6.3222 -1.2117 28 1 11.6941 5.5903 0.7837 29 6 4.2089 1.1314 -1.1948 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3635 0.5139 -0.8900 33 1 1.6886 1.8463 0.8900 34 1 1.6886 1.8464 -0.8900 35 1 3.6687 1.1733 2.1268 36 1 7.3064 0.8752 0.1539 37 1 8.1852 0.8173 -1.4683 38 1 9.0469 -1.2835 -3.3019 39 1 7.5700 -1.0107 -4.2572 40 1 8.9371 -0.0917 -6.1100 41 1 9.4422 -1.7500 -5.7050 42 1 11.4078 -0.2667 -5.9951 43 1 11.2886 -0.8491 -4.3172 44 1 10.3025 1.8531 -5.3382 45 1 11.7798 1.5807 -4.3840 46 1 9.1412 3.2392 -3.0475 47 1 9.8006 6.1654 -1.5883 48 1 3.6900 1.1731 -2.1411 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085229467.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:50:53 Heat of formation + Delta-G solvation = -47.116533 kcal Electronic energy + Delta-G solvation = -28768.790334 eV Core-core repulsion = 24823.438047 eV Total energy + Delta-G solvation = -3945.352287 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.70429 -39.40763 -38.06144 -37.65092 -34.09990 -33.92863 -33.06447 -32.08426 -31.15231 -29.27934 -27.85294 -27.57320 -25.79222 -24.57462 -23.72033 -22.78253 -21.95266 -21.09111 -20.16239 -19.52827 -17.83809 -17.18778 -17.00117 -16.72370 -16.59484 -15.87079 -15.68764 -15.20668 -14.97738 -14.82735 -14.21417 -14.00763 -13.74737 -13.60672 -13.44256 -13.22967 -13.06545 -12.96305 -12.73191 -12.65298 -12.17945 -12.16051 -12.04286 -11.75450 -11.09681 -10.94534 -10.86336 -10.76840 -10.60015 -10.35121 -10.15062 -10.09286 -10.03678 -9.91606 -9.73899 -9.65904 -9.38411 -9.23165 -8.94410 -8.63417 -7.00962 -5.79969 -3.09916 0.60663 1.04942 2.95170 3.36403 3.40782 3.46427 3.48760 3.52049 3.95279 4.24590 4.52906 4.54015 4.60798 4.78621 4.80523 4.92728 4.99231 5.03960 5.05268 5.12135 5.14153 5.28019 5.34384 5.38676 5.45714 5.50913 5.53427 5.70146 5.79761 5.87401 5.93479 5.95365 5.96521 6.01800 6.10658 6.30455 6.42021 6.44698 6.46438 6.48336 6.56683 6.77136 6.81854 6.86779 7.05457 7.66557 7.75467 7.81788 8.36920 8.45270 9.49063 10.04841 10.40019 11.41888 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.010296 B = 0.003349 C = 0.002680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2718.825277 B = 8359.438481 C =10444.914495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.386 6.386 3 C 0.109 3.891 4 C -0.157 4.157 5 C 0.139 3.861 6 N -0.486 5.486 7 C 0.147 3.853 8 C -0.180 4.180 9 C 0.564 3.436 10 O -0.544 6.544 11 N -0.699 5.699 12 C 0.141 3.859 13 H 0.086 0.914 14 C -0.124 4.124 15 C -0.113 4.113 16 C -0.120 4.120 17 C -0.133 4.133 18 C 0.172 3.828 19 H 0.051 0.949 20 N -0.722 5.722 21 C -0.241 4.241 22 H 0.071 0.929 23 C -0.010 4.010 24 N -0.928 5.928 25 Si 0.904 3.096 26 H -0.280 1.280 27 H -0.292 1.292 28 H -0.292 1.292 29 C 0.003 3.997 30 H 0.087 0.913 31 H 0.042 0.958 32 H 0.043 0.957 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.159 0.841 36 H 0.164 0.836 37 H 0.402 0.598 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.058 0.942 42 H 0.055 0.945 43 H 0.058 0.942 44 H 0.057 0.943 45 H 0.066 0.934 46 H 0.385 0.615 47 H 0.254 0.746 48 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.599 -12.284 1.711 18.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.305 6.305 3 C 0.032 3.968 4 C -0.160 4.160 5 C -0.018 4.018 6 N -0.194 5.194 7 C -0.011 4.011 8 C -0.185 4.185 9 C 0.350 3.650 10 O -0.423 6.423 11 N -0.348 5.348 12 C 0.036 3.964 13 H 0.104 0.896 14 C -0.163 4.163 15 C -0.152 4.152 16 C -0.158 4.158 17 C -0.174 4.174 18 C 0.062 3.938 19 H 0.069 0.931 20 N -0.363 5.363 21 C -0.372 4.372 22 H 0.089 0.911 23 C -0.207 4.207 24 N -0.576 5.576 25 Si 0.735 3.265 26 H -0.206 1.206 27 H -0.219 1.219 28 H -0.219 1.219 29 C -0.024 4.024 30 H 0.105 0.895 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.176 0.824 36 H 0.181 0.819 37 H 0.238 0.762 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.077 0.923 42 H 0.073 0.927 43 H 0.077 0.923 44 H 0.076 0.924 45 H 0.085 0.915 46 H 0.219 0.781 47 H 0.064 0.936 48 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -13.269 -12.391 1.869 18.251 hybrid contribution 0.143 1.065 0.113 1.080 sum -13.126 -11.326 1.982 17.450 Atomic orbital electron populations 1.22769 0.80754 1.02948 1.00130 1.87977 1.19797 1.27292 1.95449 1.21224 0.88700 0.85253 1.01589 1.20515 0.95698 1.05446 0.94299 1.22866 0.90030 0.91489 0.97432 1.67767 1.07722 1.12919 1.30961 1.23136 1.00531 0.90669 0.86759 1.21076 0.95031 1.07152 0.95256 1.17906 0.82447 0.76571 0.88053 1.90742 1.71102 1.50850 1.29559 1.45822 1.05592 1.72806 1.10587 1.21358 0.92756 0.96159 0.86118 0.89585 1.21876 1.00257 0.96606 0.97608 1.21469 0.95886 1.00595 0.97208 1.21587 0.96075 0.97664 1.00467 1.22215 1.01682 0.94558 0.98910 1.20477 0.90804 0.88243 0.94300 0.93060 1.42431 1.25645 1.07526 1.60673 1.19234 0.99656 0.95074 1.23201 0.91113 1.24739 0.97974 0.96724 1.01247 1.69682 1.30517 1.07651 1.49760 0.86171 0.81495 0.78833 0.79975 1.20565 1.21948 1.21905 1.21593 0.92551 0.89485 0.98757 0.89490 0.93910 0.93870 0.91760 0.91835 0.82380 0.81923 0.76178 0.91934 0.91880 0.91941 0.92347 0.92662 0.92347 0.92435 0.91539 0.78141 0.93570 0.83537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.32 16 2 O -0.39 -3.97 10.69 -35.23 -0.38 -4.35 16 3 C 0.11 1.00 6.08 36.01 0.22 1.22 16 4 C -0.16 -1.85 5.52 -104.54 -0.58 -2.43 16 5 C 0.14 1.66 10.85 -17.47 -0.19 1.47 16 6 N -0.49 -6.90 10.35 -12.91 -0.13 -7.03 16 7 C 0.15 2.11 10.71 -17.13 -0.18 1.92 16 8 C -0.18 -2.71 5.89 -104.82 -0.62 -3.33 16 9 C 0.56 9.63 7.75 -12.33 -0.10 9.53 16 10 O -0.54 -10.66 16.08 5.32 0.09 -10.58 16 11 N -0.70 -11.35 4.86 -54.75 -0.27 -11.61 16 12 C 0.14 2.35 1.97 -67.93 -0.13 2.22 16 13 H 0.09 1.64 7.58 -51.93 -0.39 1.25 16 14 C -0.12 -1.74 5.49 -26.74 -0.15 -1.89 16 15 C -0.11 -1.45 5.92 -26.73 -0.16 -1.61 16 16 C -0.12 -1.60 5.92 -26.73 -0.16 -1.76 16 17 C -0.13 -2.25 5.50 -26.73 -0.15 -2.40 16 18 C 0.17 3.17 2.29 -67.93 -0.16 3.02 16 19 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 20 N -0.72 -16.94 4.95 -53.42 -0.26 -17.20 16 21 C -0.24 -6.29 9.93 -15.06 -0.15 -6.44 16 22 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 23 C -0.01 -0.29 5.50 -17.43 -0.10 -0.38 16 24 N -0.93 -27.42 13.06 55.49 0.72 -26.70 16 25 Si 0.90 21.89 29.55 -169.99 -5.02 16.87 16 26 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 27 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 28 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 29 C 0.00 0.04 9.39 -38.87 -0.37 -0.33 16 30 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.04 0.23 8.14 -51.93 -0.42 -0.20 16 32 H 0.04 0.25 8.14 -51.92 -0.42 -0.17 16 33 H 0.06 0.45 8.09 -51.93 -0.42 0.03 16 34 H 0.06 0.52 8.09 -51.93 -0.42 0.10 16 35 H 0.16 1.41 8.06 -52.48 -0.42 0.99 16 36 H 0.16 2.11 6.42 -52.48 -0.34 1.78 16 37 H 0.40 6.12 6.67 -40.82 -0.27 5.85 16 38 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 41 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 43 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 44 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 45 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 46 H 0.38 10.02 7.80 -40.82 -0.32 9.70 16 47 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 48 H 0.15 1.93 7.74 -52.48 -0.41 1.52 16 LS Contribution 394.84 15.07 5.95 5.95 Total: -1.00 -32.16 394.84 -8.75 -40.91 By element: Atomic # 1 Polarization: 21.22 SS G_CDS: -7.61 Total: 13.61 kcal Atomic # 6 Polarization: 1.97 SS G_CDS: -1.84 Total: 0.13 kcal Atomic # 7 Polarization: -62.61 SS G_CDS: 0.06 Total: -62.55 kcal Atomic # 8 Polarization: -14.64 SS G_CDS: -0.29 Total: -14.93 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -32.16 -8.75 -40.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085229467.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.202 kcal (2) G-P(sol) polarization free energy of solvation -32.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds