Wall clock time and date at job start Tue Mar 31 2020 17:50:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42889 * 1 3 3 C 1.42907 * 114.00144 * 2 1 4 4 C 1.50703 * 109.47080 * 180.02562 * 3 2 1 5 5 C 1.38352 * 120.34723 * 270.02311 * 4 3 2 6 6 N 1.31922 * 121.08311 * 179.97438 * 5 4 3 7 7 C 1.31695 * 121.87784 * 359.74933 * 6 5 4 8 8 C 1.39524 * 120.56497 * 0.53641 * 7 6 5 9 9 C 1.47843 * 120.55977 * 179.72143 * 8 7 6 10 10 O 1.21547 * 119.99901 * 179.72028 * 9 8 7 11 11 N 1.34769 * 119.99669 * 359.72961 * 9 8 7 12 12 C 1.46505 * 119.99798 * 179.97438 * 11 9 8 13 13 H 1.09002 * 109.47068 * 34.99973 * 12 11 9 14 14 C 1.52997 * 109.47212 * 274.99913 * 12 11 9 15 15 C 1.52992 * 109.47482 * 179.97438 * 14 12 11 16 16 C 1.53002 * 109.47106 * 60.00162 * 15 14 12 17 17 C 1.53002 * 109.47128 * 300.00123 * 16 15 14 18 18 C 1.52997 * 109.46978 * 59.99726 * 17 16 15 19 19 H 1.09002 * 109.47497 * 60.00450 * 18 17 16 20 20 N 1.46507 * 109.47235 * 180.02562 * 18 17 16 21 21 C 1.36936 * 119.99663 * 275.00138 * 20 18 17 22 22 H 1.07998 * 120.00133 * 359.97438 * 21 20 18 23 23 C 1.38811 * 119.99967 * 180.02562 * 21 20 18 24 24 N 1.31621 * 119.99860 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 120.00257 * 180.02562 * 23 21 20 26 26 H 1.48506 * 109.46920 * 359.97438 * 25 23 21 27 27 H 1.48509 * 109.47210 * 119.99507 * 25 23 21 28 28 H 1.48492 * 109.47349 * 239.99702 * 25 23 21 29 29 C 1.38354 * 120.35180 * 89.99930 * 4 3 2 30 30 H 1.09000 * 109.47683 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47318 * 300.00047 * 1 2 3 32 32 H 1.09008 * 109.47677 * 59.99790 * 1 2 3 33 33 H 1.08994 * 109.46609 * 60.00564 * 3 2 1 34 34 H 1.08996 * 109.47069 * 299.99736 * 3 2 1 35 35 H 1.08004 * 119.46112 * 359.97438 * 5 4 3 36 36 H 1.08004 * 119.72084 * 180.26441 * 7 6 5 37 37 H 0.97005 * 120.00963 * 359.97438 * 11 9 8 38 38 H 1.09002 * 109.47153 * 300.00008 * 14 12 11 39 39 H 1.08998 * 109.47533 * 59.99637 * 14 12 11 40 40 H 1.09002 * 109.47103 * 300.00247 * 15 14 12 41 41 H 1.08996 * 109.47747 * 179.97438 * 15 14 12 42 42 H 1.08996 * 109.47407 * 180.02562 * 16 15 14 43 43 H 1.09002 * 109.47596 * 60.00070 * 16 15 14 44 44 H 1.09002 * 109.47097 * 299.99925 * 17 16 15 45 45 H 1.08998 * 109.47844 * 180.02562 * 17 16 15 46 46 H 0.96997 * 120.00022 * 95.00053 * 20 18 17 47 47 H 0.96998 * 119.99581 * 180.02562 * 24 23 21 48 48 H 1.08003 * 120.85210 * 0.02562 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 6 4.2098 1.1306 1.1930 6 7 5.5247 1.0258 1.2094 7 6 6.2315 0.9650 0.0998 8 6 5.6039 1.0212 -1.1451 9 6 6.3979 0.9591 -2.3906 10 8 5.8403 1.0039 -3.4697 11 7 7.7400 0.8527 -2.3295 12 6 8.5269 0.7906 -3.5638 13 1 8.0616 1.4189 -4.3233 14 6 8.5816 -0.6551 -4.0614 15 6 9.4028 -0.7200 -5.3507 16 6 10.8229 -0.2209 -5.0766 17 6 10.7682 1.2249 -4.5789 18 6 9.9470 1.2897 -3.2896 19 1 10.4126 0.6615 -2.5302 20 7 9.8940 2.6742 -2.8133 21 6 10.9075 3.1705 -2.0376 22 1 11.7455 2.5413 -1.7766 23 6 10.8571 4.4821 -1.5859 24 7 9.8355 5.2488 -1.9036 25 14 12.2399 5.1595 -0.5283 26 1 13.2631 4.1043 -0.3160 27 1 12.8617 6.3222 -1.2117 28 1 11.6941 5.5903 0.7837 29 6 4.2089 1.1314 -1.1948 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3635 0.5139 -0.8900 33 1 1.6886 1.8463 0.8900 34 1 1.6886 1.8464 -0.8900 35 1 3.6687 1.1733 2.1268 36 1 7.3064 0.8752 0.1539 37 1 8.1852 0.8173 -1.4683 38 1 9.0469 -1.2835 -3.3019 39 1 7.5700 -1.0107 -4.2572 40 1 8.9371 -0.0917 -6.1100 41 1 9.4422 -1.7500 -5.7050 42 1 11.4078 -0.2667 -5.9951 43 1 11.2886 -0.8491 -4.3172 44 1 10.3025 1.8531 -5.3382 45 1 11.7798 1.5807 -4.3840 46 1 9.1412 3.2392 -3.0475 47 1 9.8006 6.1654 -1.5883 48 1 3.6900 1.1731 -2.1411 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085229467.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:50:53 Heat of formation + Delta-G solvation = -68.986771 kcal Electronic energy + Delta-G solvation = -28769.738699 eV Core-core repulsion = 24823.438047 eV Total energy + Delta-G solvation = -3946.300652 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.84100 -40.65471 -39.14115 -38.65760 -35.81591 -35.31752 -34.06220 -33.20790 -32.94944 -30.55807 -29.33234 -28.39392 -26.49994 -25.86115 -25.44977 -23.82242 -23.19823 -22.49861 -21.46920 -20.79644 -19.30637 -18.76875 -18.12318 -17.72159 -17.37806 -17.05301 -16.72202 -16.42276 -16.15492 -16.08413 -15.74454 -15.41340 -15.17048 -14.84563 -14.64526 -14.60171 -14.24237 -14.09624 -13.94739 -13.60921 -13.54612 -13.34294 -12.93119 -12.90316 -12.85333 -12.36709 -12.20531 -12.16861 -12.02664 -12.00641 -11.67632 -11.43648 -11.36700 -11.06881 -11.00101 -10.88539 -10.71817 -10.49305 -10.29866 -9.96867 -8.99096 -7.90923 -5.19586 -0.46824 0.00743 1.48255 1.49124 1.58238 1.73971 2.09252 2.57063 2.59724 3.03218 3.25323 3.42932 3.61156 3.67962 3.71493 3.73669 3.81876 3.84132 4.01587 4.13759 4.24454 4.30352 4.31723 4.43871 4.48450 4.51076 4.53868 4.57980 4.59878 4.62948 4.70153 4.89499 4.90394 4.95651 5.01411 5.03870 5.15429 5.24822 5.30109 5.31259 5.42739 5.46482 5.52871 5.56459 5.66942 6.16917 6.28877 6.47183 6.72645 7.11595 7.35947 8.09347 8.33401 9.32219 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.010296 B = 0.003349 C = 0.002680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2718.825277 B = 8359.438481 C =10444.914495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.412 6.412 3 C 0.110 3.890 4 C -0.151 4.151 5 C 0.141 3.859 6 N -0.503 5.503 7 C 0.141 3.859 8 C -0.198 4.198 9 C 0.562 3.438 10 O -0.577 6.577 11 N -0.696 5.696 12 C 0.148 3.852 13 H 0.056 0.944 14 C -0.116 4.116 15 C -0.110 4.110 16 C -0.110 4.110 17 C -0.128 4.128 18 C 0.171 3.829 19 H 0.061 0.939 20 N -0.732 5.732 21 C -0.227 4.227 22 H 0.080 0.920 23 C -0.074 4.074 24 N -0.969 5.969 25 Si 0.966 3.034 26 H -0.263 1.263 27 H -0.301 1.301 28 H -0.298 1.298 29 C -0.007 4.007 30 H 0.094 0.906 31 H 0.059 0.941 32 H 0.050 0.950 33 H 0.092 0.908 34 H 0.071 0.929 35 H 0.193 0.807 36 H 0.169 0.831 37 H 0.407 0.593 38 H 0.080 0.920 39 H 0.057 0.943 40 H 0.054 0.946 41 H 0.087 0.913 42 H 0.073 0.927 43 H 0.072 0.928 44 H 0.041 0.959 45 H 0.051 0.949 46 H 0.368 0.632 47 H 0.247 0.753 48 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.760 -14.144 2.666 19.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.332 6.332 3 C 0.033 3.967 4 C -0.153 4.153 5 C -0.015 4.015 6 N -0.211 5.211 7 C -0.016 4.016 8 C -0.203 4.203 9 C 0.350 3.650 10 O -0.458 6.458 11 N -0.345 5.345 12 C 0.043 3.957 13 H 0.075 0.925 14 C -0.155 4.155 15 C -0.148 4.148 16 C -0.148 4.148 17 C -0.168 4.168 18 C 0.063 3.937 19 H 0.079 0.921 20 N -0.371 5.371 21 C -0.359 4.359 22 H 0.098 0.902 23 C -0.267 4.267 24 N -0.620 5.620 25 Si 0.796 3.204 26 H -0.187 1.187 27 H -0.228 1.228 28 H -0.225 1.225 29 C -0.034 4.034 30 H 0.113 0.887 31 H 0.078 0.922 32 H 0.068 0.932 33 H 0.110 0.890 34 H 0.089 0.911 35 H 0.210 0.790 36 H 0.186 0.814 37 H 0.244 0.756 38 H 0.098 0.902 39 H 0.076 0.924 40 H 0.072 0.928 41 H 0.106 0.894 42 H 0.092 0.908 43 H 0.091 0.909 44 H 0.060 0.940 45 H 0.070 0.930 46 H 0.200 0.800 47 H 0.056 0.944 48 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -13.397 -14.316 2.823 19.809 hybrid contribution 0.104 1.581 -0.190 1.596 sum -13.292 -12.735 2.633 18.595 Atomic orbital electron populations 1.22960 0.78947 1.03909 1.01296 1.87926 1.21802 1.27782 1.95710 1.21310 0.86701 0.85362 1.03331 1.20810 0.97378 1.03762 0.93351 1.23466 0.89442 0.89738 0.98904 1.67816 1.08944 1.13654 1.30697 1.23203 1.00959 0.90835 0.86632 1.20965 0.95566 1.09225 0.94518 1.18237 0.82603 0.75770 0.88418 1.90711 1.71668 1.52560 1.30870 1.45818 1.05544 1.72433 1.10699 1.21241 0.91209 0.97619 0.85643 0.92544 1.21819 1.00533 0.94353 0.98759 1.21475 0.94972 1.02166 0.96187 1.21522 0.96902 0.94773 1.01601 1.22085 0.99978 0.97231 0.97546 1.20693 0.92266 0.85707 0.95074 0.92135 1.42596 1.24522 1.09304 1.60632 1.19603 0.99751 0.94916 1.21594 0.90172 1.25469 1.00247 0.97473 1.03477 1.69846 1.32694 1.07562 1.51909 0.85176 0.79254 0.78082 0.77871 1.18728 1.22832 1.22519 1.21742 0.92184 0.89714 0.99715 0.88739 0.92248 0.93175 0.89043 0.91096 0.78995 0.81431 0.75605 0.90185 0.92433 0.92756 0.89430 0.90830 0.90897 0.94043 0.93034 0.80049 0.94433 0.83727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 11.01 113.37 1.25 1.52 16 2 O -0.41 -7.72 10.69 -148.98 -1.59 -9.32 16 3 C 0.11 1.78 6.08 71.24 0.43 2.21 16 4 C -0.15 -3.37 5.52 -19.81 -0.11 -3.48 16 5 C 0.14 3.14 10.85 84.71 0.92 4.06 16 6 N -0.50 -13.88 10.35 -194.75 -2.01 -15.89 16 7 C 0.14 4.08 10.71 85.02 0.91 4.99 16 8 C -0.20 -6.10 5.89 -19.99 -0.12 -6.21 16 9 C 0.56 19.91 7.75 86.79 0.67 20.59 16 10 O -0.58 -23.61 16.08 -3.86 -0.06 -23.67 16 11 N -0.70 -23.14 4.86 -445.41 -2.17 -25.30 16 12 C 0.15 4.99 1.97 44.99 0.09 5.08 16 13 H 0.06 2.25 7.58 -2.39 -0.02 2.24 16 14 C -0.12 -3.08 5.49 30.59 0.17 -2.91 16 15 C -0.11 -2.56 5.92 30.59 0.18 -2.38 16 16 C -0.11 -2.66 5.92 30.60 0.18 -2.48 16 17 C -0.13 -4.26 5.50 30.59 0.17 -4.09 16 18 C 0.17 6.28 2.29 44.99 0.10 6.38 16 19 H 0.06 2.13 8.08 -2.39 -0.02 2.12 16 20 N -0.73 -35.00 4.95 -322.93 -1.60 -36.60 16 21 C -0.23 -11.90 9.93 84.03 0.83 -11.06 16 22 H 0.08 4.00 7.83 -2.91 -0.02 3.98 16 23 C -0.07 -4.17 5.50 84.86 0.47 -3.70 16 24 N -0.97 -58.94 13.06 21.65 0.28 -58.66 16 25 Si 0.97 45.46 29.55 68.60 2.03 47.49 16 26 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 27 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 28 H -0.30 -14.16 7.11 99.48 0.71 -13.46 16 29 C -0.01 -0.19 9.39 22.73 0.21 0.02 16 30 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.05 0.48 8.14 -2.38 -0.02 0.46 16 33 H 0.09 0.99 8.09 -2.39 -0.02 0.97 16 34 H 0.07 1.04 8.09 -2.39 -0.02 1.02 16 35 H 0.19 2.82 8.06 -2.91 -0.02 2.80 16 36 H 0.17 4.44 6.42 -2.91 -0.02 4.42 16 37 H 0.41 12.60 6.67 -92.70 -0.62 11.98 16 38 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 39 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.05 1.36 8.14 -2.39 -0.02 1.35 16 41 H 0.09 1.60 8.14 -2.39 -0.02 1.59 16 42 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 43 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 44 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 45 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 46 H 0.37 19.97 7.80 -92.71 -0.72 19.24 16 47 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 48 H 0.14 3.94 7.74 -2.91 -0.02 3.92 16 Total: -1.00 -70.97 394.84 0.87 -70.10 By element: Atomic # 1 Polarization: 43.69 SS G_CDS: -0.37 Total: 43.32 kcal Atomic # 6 Polarization: 2.16 SS G_CDS: 6.36 Total: 8.52 kcal Atomic # 7 Polarization: -130.95 SS G_CDS: -5.50 Total: -136.45 kcal Atomic # 8 Polarization: -31.33 SS G_CDS: -1.65 Total: -32.99 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.49 kcal Total: -70.97 0.87 -70.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085229467.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.110 kcal (2) G-P(sol) polarization free energy of solvation -70.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds