Wall clock time and date at job start Tue Mar 31 2020 17:29:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35691 * 117.00162 * 2 1 4 4 C 1.38896 * 119.62266 * 180.02562 * 3 2 1 5 5 C 1.39569 * 118.94175 * 179.97438 * 4 3 2 6 6 C 1.48161 * 120.88860 * 179.97438 * 5 4 3 7 7 O 1.21513 * 120.00501 * 212.52230 * 6 5 4 8 8 N 1.34777 * 119.99931 * 32.52784 * 6 5 4 9 9 C 1.45332 * 120.36861 * 6.21507 * 8 6 5 10 10 C 1.53445 * 108.41696 * 136.65833 * 9 8 6 11 11 C 1.52884 * 109.38370 * 282.28290 * 10 9 8 12 12 C 1.53952 * 109.72848 * 72.89811 * 11 10 9 13 13 C 1.52440 * 110.73327 * 44.36522 * 12 11 10 14 14 C 1.53807 * 109.40093 * 246.27090 * 13 12 11 15 15 H 1.08999 * 109.52353 * 317.86440 * 14 13 12 16 16 N 1.46499 * 109.52305 * 197.74156 * 14 13 12 17 17 C 1.36932 * 120.00013 * 154.99992 * 16 14 13 18 18 H 1.07992 * 120.00380 * 0.02562 * 17 16 14 19 19 C 1.38818 * 119.99831 * 179.97438 * 17 16 14 20 20 N 1.31619 * 120.00099 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99896 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.46933 * 60.00196 * 21 19 17 23 23 H 1.48494 * 109.47091 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47286 * 300.00248 * 21 19 17 25 25 C 1.46972 * 120.36796 * 185.94331 * 8 6 5 26 26 C 1.39968 * 118.22335 * 0.02562 * 5 4 3 27 27 C 1.37984 * 119.12949 * 0.26911 * 26 5 4 28 28 N 1.31912 * 120.97710 * 359.40913 * 27 26 5 29 29 H 1.09002 * 109.47163 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.46893 * 300.00035 * 1 2 3 31 31 H 1.08998 * 109.47116 * 59.99257 * 1 2 3 32 32 H 1.07999 * 120.52602 * 0.02623 * 4 3 2 33 33 H 1.09002 * 109.68082 * 256.39541 * 9 8 6 34 34 H 1.09010 * 109.66965 * 16.93160 * 9 8 6 35 35 H 1.08995 * 109.48304 * 42.25609 * 10 9 8 36 36 H 1.08997 * 109.48583 * 162.29224 * 10 9 8 37 37 H 1.09004 * 109.42548 * 192.97520 * 11 10 9 38 38 H 1.08996 * 109.43100 * 312.81401 * 11 10 9 39 39 H 1.09007 * 109.21844 * 164.68499 * 12 11 10 40 40 H 1.09001 * 109.22539 * 284.07897 * 12 11 10 41 41 H 1.08997 * 109.48235 * 6.24446 * 13 12 11 42 42 H 1.08999 * 109.48599 * 126.29685 * 13 12 11 43 43 H 0.97005 * 120.00015 * 334.99426 * 16 14 13 44 44 H 0.96999 * 120.00187 * 179.97438 * 20 19 17 45 45 H 1.09000 * 109.53132 * 51.52006 * 25 8 6 46 46 H 1.08992 * 109.53387 * 171.74944 * 25 8 6 47 47 H 1.07991 * 120.43510 * 179.97438 * 26 5 4 48 48 H 1.07994 * 119.50660 * 179.70285 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2090 0.0000 4 6 3.4325 1.2725 -0.0005 5 6 4.0514 2.5235 -0.0011 6 6 5.5283 2.6415 -0.0011 7 8 6.0634 3.5746 0.5642 8 7 6.2784 1.7139 -0.6283 9 6 5.6473 0.6710 -1.4196 10 6 6.4364 0.5087 -2.7255 11 6 6.0688 1.6411 -3.6846 12 6 6.6984 2.9591 -3.1982 13 6 8.1456 2.7408 -2.7718 14 6 8.2719 2.9701 -1.2562 15 1 7.6906 3.8470 -0.9708 16 7 9.6792 3.1814 -0.9085 17 6 10.0077 3.8883 0.2173 18 1 9.2294 4.2897 0.8492 19 6 11.3413 4.0880 0.5469 20 7 12.2900 3.5984 -0.2229 21 14 11.7895 5.0529 2.0824 22 1 11.2225 4.3752 3.2759 23 1 13.2673 5.1242 2.2084 24 1 11.2347 6.4269 1.9831 25 6 7.7440 1.7493 -0.5245 26 6 3.2395 3.6636 -0.0005 27 6 1.8681 3.5116 0.0062 28 7 1.3178 2.3127 0.0004 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 4.0231 0.3683 -0.0014 33 1 5.6579 -0.2675 -0.8653 34 1 4.6187 0.9531 -1.6449 35 1 7.5046 0.5456 -2.5118 36 1 6.1900 -0.4496 -3.1826 37 1 6.4420 1.4073 -4.6817 38 1 4.9847 1.7486 -3.7201 39 1 6.6687 3.6906 -4.0059 40 1 6.1282 3.3378 -2.3499 41 1 8.4451 1.7205 -3.0112 42 1 8.7903 3.4428 -3.3006 43 1 10.3784 2.8205 -1.4759 44 1 13.2218 3.7383 0.0072 45 1 8.0337 1.8079 0.5247 46 1 8.1628 0.8469 -0.9696 47 1 3.6806 4.6493 -0.0005 48 1 1.2359 4.3871 0.0116 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088340623.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:29:38 Heat of formation + Delta-G solvation = -0.613723 kcal Electronic energy + Delta-G solvation = -30075.700202 eV Core-core repulsion = 26132.364428 eV Total energy + Delta-G solvation = -3943.335774 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -41.24945 -40.06281 -38.17226 -37.33778 -35.16494 -34.00516 -32.83408 -31.96586 -30.98183 -29.67632 -27.97858 -27.29530 -26.28404 -24.77490 -23.77916 -23.20950 -22.51138 -20.93310 -20.06682 -19.47841 -18.04438 -17.26792 -17.02581 -16.65149 -16.34102 -16.10264 -15.82047 -15.76329 -14.91956 -14.60762 -14.40219 -14.14371 -14.05099 -13.66202 -13.60213 -13.53977 -13.00353 -12.82657 -12.74315 -12.49553 -12.20985 -11.93314 -11.81404 -11.51796 -11.49505 -11.07207 -10.93381 -10.77706 -10.70839 -10.47140 -10.25942 -10.24273 -10.13459 -10.02614 -9.88653 -9.55656 -9.37452 -8.97761 -8.77682 -8.29137 -6.90330 -5.70280 -2.98761 0.58653 0.90217 2.70256 2.87028 3.10988 3.51412 3.54382 3.57542 3.59958 3.99554 4.36590 4.60415 4.68450 4.71769 4.80506 4.93360 4.94422 4.97326 5.01162 5.04710 5.25261 5.30636 5.33208 5.35655 5.39605 5.52765 5.61698 5.64397 5.75374 5.78381 5.85027 5.90258 5.97846 6.03118 6.06679 6.13437 6.17600 6.38029 6.44912 6.50368 6.66836 6.69513 6.88551 6.91012 7.19543 7.51897 7.58100 7.86434 8.28660 8.49180 9.60328 10.15183 10.50627 11.52261 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.015860 B = 0.003351 C = 0.003011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1765.029193 B = 8354.326759 C = 9295.653333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.307 6.307 3 C 0.314 3.686 4 C -0.166 4.166 5 C -0.041 4.041 6 C 0.549 3.451 7 O -0.507 6.507 8 N -0.592 5.592 9 C 0.096 3.904 10 C -0.151 4.151 11 C -0.113 4.113 12 C -0.116 4.116 13 C -0.130 4.130 14 C 0.162 3.838 15 H 0.067 0.933 16 N -0.719 5.719 17 C -0.233 4.233 18 H 0.074 0.926 19 C -0.015 4.015 20 N -0.937 5.937 21 Si 0.906 3.094 22 H -0.286 1.286 23 H -0.292 1.292 24 H -0.286 1.286 25 C 0.099 3.901 26 C -0.158 4.158 27 C 0.136 3.864 28 N -0.531 5.531 29 H 0.096 0.904 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.153 0.847 33 H 0.065 0.935 34 H 0.086 0.914 35 H 0.091 0.909 36 H 0.070 0.930 37 H 0.060 0.940 38 H 0.055 0.945 39 H 0.053 0.947 40 H 0.060 0.940 41 H 0.063 0.937 42 H 0.064 0.936 43 H 0.383 0.617 44 H 0.254 0.746 45 H 0.077 0.923 46 H 0.076 0.924 47 H 0.149 0.851 48 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.616 -8.453 -5.592 25.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.214 6.214 3 C 0.135 3.865 4 C -0.187 4.187 5 C -0.052 4.052 6 C 0.335 3.665 7 O -0.382 6.382 8 N -0.325 5.325 9 C -0.028 4.028 10 C -0.189 4.189 11 C -0.151 4.151 12 C -0.154 4.154 13 C -0.169 4.169 14 C 0.052 3.948 15 H 0.084 0.916 16 N -0.359 5.359 17 C -0.364 4.364 18 H 0.092 0.908 19 C -0.210 4.210 20 N -0.585 5.585 21 Si 0.737 3.263 22 H -0.213 1.213 23 H -0.218 1.218 24 H -0.213 1.213 25 C -0.025 4.025 26 C -0.179 4.179 27 C -0.019 4.019 28 N -0.255 5.255 29 H 0.114 0.886 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.171 0.829 33 H 0.083 0.917 34 H 0.104 0.896 35 H 0.109 0.891 36 H 0.089 0.911 37 H 0.078 0.922 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.079 0.921 41 H 0.081 0.919 42 H 0.082 0.918 43 H 0.217 0.783 44 H 0.064 0.936 45 H 0.095 0.905 46 H 0.094 0.906 47 H 0.167 0.833 48 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -24.052 -8.197 -5.131 25.923 hybrid contribution 1.099 0.428 0.667 1.355 sum -22.953 -7.770 -4.463 24.640 Atomic orbital electron populations 1.22862 0.77127 1.02970 1.02481 1.86246 1.22965 1.24283 1.87931 1.19666 0.88986 0.84835 0.93005 1.21518 0.92297 0.99070 1.05836 1.20339 0.94665 0.93104 0.97086 1.18080 0.85404 0.82838 0.80155 1.90879 1.72684 1.30827 1.43831 1.47846 1.08000 1.28121 1.48531 1.22040 0.97775 0.90903 0.92057 1.22353 1.02691 0.98722 0.95103 1.21715 0.99804 0.95154 0.98428 1.21660 0.96738 0.96527 1.00508 1.22101 0.95540 1.01559 0.97655 1.20630 0.87818 0.95649 0.90742 0.91558 1.42389 1.00114 1.64390 1.29038 1.19311 0.91411 1.25416 1.00298 0.90789 1.24727 0.95709 1.01520 0.99044 1.69653 0.99138 1.50606 1.39137 0.86275 0.76818 0.80055 0.83136 1.21289 1.21840 1.21267 1.22628 0.75494 1.01298 1.03087 1.22141 0.94158 0.99741 1.01878 1.22384 0.92522 0.93556 0.93426 1.67172 1.41244 0.98949 1.18165 0.88593 0.92289 0.92256 0.82940 0.91685 0.89566 0.89066 0.91145 0.92155 0.92606 0.92834 0.92133 0.91867 0.91756 0.78320 0.93603 0.90472 0.90575 0.83346 0.81682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.29 10.38 101.05 1.05 1.34 16 2 O -0.31 -3.15 10.47 -18.78 -0.20 -3.34 16 3 C 0.31 3.54 7.49 -17.16 -0.13 3.41 16 4 C -0.17 -1.89 7.51 -38.84 -0.29 -2.18 16 5 C -0.04 -0.53 5.29 -104.68 -0.55 -1.09 16 6 C 0.55 8.85 6.01 -12.18 -0.07 8.77 16 7 O -0.51 -10.41 15.37 5.35 0.08 -10.33 16 8 N -0.59 -8.62 1.70 -175.67 -0.30 -8.91 16 9 C 0.10 1.03 4.28 -4.44 -0.02 1.01 16 10 C -0.15 -1.58 5.45 -26.56 -0.14 -1.72 16 11 C -0.11 -1.24 5.75 -26.29 -0.15 -1.39 16 12 C -0.12 -1.61 5.40 -26.52 -0.14 -1.75 16 13 C -0.13 -2.15 4.97 -26.60 -0.13 -2.28 16 14 C 0.16 3.28 2.38 -68.12 -0.16 3.12 16 15 H 0.07 1.52 5.93 -51.93 -0.31 1.22 16 16 N -0.72 -18.12 5.12 -53.61 -0.27 -18.40 16 17 C -0.23 -6.66 9.89 -15.06 -0.15 -6.81 16 18 H 0.07 2.16 7.83 -52.49 -0.41 1.75 16 19 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 20 N -0.94 -28.51 13.06 55.49 0.72 -27.79 16 21 Si 0.91 23.24 29.55 -169.99 -5.02 18.22 16 22 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 23 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 24 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 25 C 0.10 1.75 4.74 -4.39 -0.02 1.73 16 26 C -0.16 -1.82 9.70 -39.03 -0.38 -2.20 16 27 C 0.14 1.33 11.17 -17.61 -0.20 1.14 16 28 N -0.53 -5.83 9.18 -13.37 -0.12 -5.95 16 29 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.42 8.10 -51.92 -0.42 0.00 16 31 H 0.06 0.41 8.10 -51.93 -0.42 -0.01 16 32 H 0.15 1.54 5.66 -52.49 -0.30 1.25 16 33 H 0.07 0.61 7.58 -51.93 -0.39 0.21 16 34 H 0.09 0.87 4.76 -51.92 -0.25 0.62 16 35 H 0.09 1.10 3.35 -51.93 -0.17 0.93 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.06 0.56 7.87 -51.93 -0.41 0.15 16 39 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.06 0.93 5.37 -51.93 -0.28 0.65 16 41 H 0.06 0.96 5.47 -51.93 -0.28 0.67 16 42 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 43 H 0.38 10.10 7.80 -40.82 -0.32 9.78 16 44 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 45 H 0.08 1.63 8.10 -51.93 -0.42 1.21 16 46 H 0.08 1.22 6.06 -51.93 -0.31 0.91 16 47 H 0.15 1.66 8.02 -52.49 -0.42 1.24 16 48 H 0.17 1.07 8.06 -52.49 -0.42 0.65 16 LS Contribution 368.78 15.07 5.56 5.56 Total: -1.00 -33.45 368.78 -7.93 -41.38 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: -6.79 Total: 8.97 kcal Atomic # 6 Polarization: 2.19 SS G_CDS: -1.59 Total: 0.59 kcal Atomic # 7 Polarization: -61.08 SS G_CDS: 0.03 Total: -61.05 kcal Atomic # 8 Polarization: -13.56 SS G_CDS: -0.11 Total: -13.67 kcal Atomic # 14 Polarization: 23.24 SS G_CDS: -5.02 Total: 18.22 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.45 -7.93 -41.38 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088340623.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.768 kcal (2) G-P(sol) polarization free energy of solvation -33.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds