Wall clock time and date at job start Tue Mar 31 2020 17:29:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35691 * 117.00162 * 2 1 4 4 C 1.38896 * 119.62266 * 180.02562 * 3 2 1 5 5 C 1.39569 * 118.94175 * 179.97438 * 4 3 2 6 6 C 1.48161 * 120.88860 * 179.97438 * 5 4 3 7 7 O 1.21513 * 120.00501 * 212.52230 * 6 5 4 8 8 N 1.34777 * 119.99931 * 32.52784 * 6 5 4 9 9 C 1.45332 * 120.36861 * 6.21507 * 8 6 5 10 10 C 1.53445 * 108.41696 * 136.65833 * 9 8 6 11 11 C 1.52884 * 109.38370 * 282.28290 * 10 9 8 12 12 C 1.53952 * 109.72848 * 72.89811 * 11 10 9 13 13 C 1.52440 * 110.73327 * 44.36522 * 12 11 10 14 14 C 1.53807 * 109.40093 * 246.27090 * 13 12 11 15 15 H 1.08999 * 109.52353 * 317.86440 * 14 13 12 16 16 N 1.46499 * 109.52305 * 197.74156 * 14 13 12 17 17 C 1.36932 * 120.00013 * 154.99992 * 16 14 13 18 18 H 1.07992 * 120.00380 * 0.02562 * 17 16 14 19 19 C 1.38818 * 119.99831 * 179.97438 * 17 16 14 20 20 N 1.31619 * 120.00099 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99896 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.46933 * 60.00196 * 21 19 17 23 23 H 1.48494 * 109.47091 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47286 * 300.00248 * 21 19 17 25 25 C 1.46972 * 120.36796 * 185.94331 * 8 6 5 26 26 C 1.39968 * 118.22335 * 0.02562 * 5 4 3 27 27 C 1.37984 * 119.12949 * 0.26911 * 26 5 4 28 28 N 1.31912 * 120.97710 * 359.40913 * 27 26 5 29 29 H 1.09002 * 109.47163 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.46893 * 300.00035 * 1 2 3 31 31 H 1.08998 * 109.47116 * 59.99257 * 1 2 3 32 32 H 1.07999 * 120.52602 * 0.02623 * 4 3 2 33 33 H 1.09002 * 109.68082 * 256.39541 * 9 8 6 34 34 H 1.09010 * 109.66965 * 16.93160 * 9 8 6 35 35 H 1.08995 * 109.48304 * 42.25609 * 10 9 8 36 36 H 1.08997 * 109.48583 * 162.29224 * 10 9 8 37 37 H 1.09004 * 109.42548 * 192.97520 * 11 10 9 38 38 H 1.08996 * 109.43100 * 312.81401 * 11 10 9 39 39 H 1.09007 * 109.21844 * 164.68499 * 12 11 10 40 40 H 1.09001 * 109.22539 * 284.07897 * 12 11 10 41 41 H 1.08997 * 109.48235 * 6.24446 * 13 12 11 42 42 H 1.08999 * 109.48599 * 126.29685 * 13 12 11 43 43 H 0.97005 * 120.00015 * 334.99426 * 16 14 13 44 44 H 0.96999 * 120.00187 * 179.97438 * 20 19 17 45 45 H 1.09000 * 109.53132 * 51.52006 * 25 8 6 46 46 H 1.08992 * 109.53387 * 171.74944 * 25 8 6 47 47 H 1.07991 * 120.43510 * 179.97438 * 26 5 4 48 48 H 1.07994 * 119.50660 * 179.70285 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2090 0.0000 4 6 3.4325 1.2725 -0.0005 5 6 4.0514 2.5235 -0.0011 6 6 5.5283 2.6415 -0.0011 7 8 6.0634 3.5746 0.5642 8 7 6.2784 1.7139 -0.6283 9 6 5.6473 0.6710 -1.4196 10 6 6.4364 0.5087 -2.7255 11 6 6.0688 1.6411 -3.6846 12 6 6.6984 2.9591 -3.1982 13 6 8.1456 2.7408 -2.7718 14 6 8.2719 2.9701 -1.2562 15 1 7.6906 3.8470 -0.9708 16 7 9.6792 3.1814 -0.9085 17 6 10.0077 3.8883 0.2173 18 1 9.2294 4.2897 0.8492 19 6 11.3413 4.0880 0.5469 20 7 12.2900 3.5984 -0.2229 21 14 11.7895 5.0529 2.0824 22 1 11.2225 4.3752 3.2759 23 1 13.2673 5.1242 2.2084 24 1 11.2347 6.4269 1.9831 25 6 7.7440 1.7493 -0.5245 26 6 3.2395 3.6636 -0.0005 27 6 1.8681 3.5116 0.0062 28 7 1.3178 2.3127 0.0004 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 4.0231 0.3683 -0.0014 33 1 5.6579 -0.2675 -0.8653 34 1 4.6187 0.9531 -1.6449 35 1 7.5046 0.5456 -2.5118 36 1 6.1900 -0.4496 -3.1826 37 1 6.4420 1.4073 -4.6817 38 1 4.9847 1.7486 -3.7201 39 1 6.6687 3.6906 -4.0059 40 1 6.1282 3.3378 -2.3499 41 1 8.4451 1.7205 -3.0112 42 1 8.7903 3.4428 -3.3006 43 1 10.3784 2.8205 -1.4759 44 1 13.2218 3.7383 0.0072 45 1 8.0337 1.8079 0.5247 46 1 8.1628 0.8469 -0.9696 47 1 3.6806 4.6493 -0.0005 48 1 1.2359 4.3871 0.0116 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088340623.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:29:37 Heat of formation + Delta-G solvation = -23.948029 kcal Electronic energy + Delta-G solvation = -30076.712054 eV Core-core repulsion = 26132.364428 eV Total energy + Delta-G solvation = -3944.347625 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -42.26069 -41.11760 -39.13230 -38.48455 -36.78136 -35.30879 -34.12561 -33.49167 -31.81749 -31.30403 -29.21990 -28.17334 -27.43669 -26.09921 -25.22166 -24.34635 -23.59221 -22.40734 -21.15780 -20.59851 -19.14083 -19.06121 -18.15190 -17.70257 -17.30786 -17.12756 -16.99401 -16.87337 -16.29458 -15.98302 -15.56480 -15.37043 -15.18272 -15.02136 -14.94056 -14.41332 -14.31803 -14.20578 -14.06787 -13.60615 -13.26015 -13.17100 -13.01440 -12.81547 -12.66389 -12.60260 -12.25752 -12.17965 -12.06641 -12.00334 -11.78243 -11.48534 -11.42684 -11.41670 -11.23346 -11.01710 -10.93832 -10.54650 -9.71545 -9.57013 -8.95317 -7.96292 -5.24027 -0.36331 0.05671 1.42566 1.45185 1.52082 1.65776 1.82486 2.09805 2.54746 2.68719 3.18735 3.35402 3.40291 3.67348 3.85317 3.88991 3.94840 4.00278 4.07653 4.09039 4.16542 4.23709 4.41850 4.45354 4.46907 4.48998 4.57129 4.62232 4.69741 4.71320 4.75736 4.81521 4.83652 4.92348 4.99910 5.04217 5.14741 5.23224 5.23501 5.30254 5.38674 5.42708 5.52423 5.53591 5.69363 6.15274 6.26774 6.38563 6.69082 7.04341 7.33539 8.06915 8.33228 9.26251 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.015860 B = 0.003351 C = 0.003011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1765.029193 B = 8354.326759 C = 9295.653333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.314 6.314 3 C 0.311 3.689 4 C -0.163 4.163 5 C -0.053 4.053 6 C 0.546 3.454 7 O -0.566 6.566 8 N -0.584 5.584 9 C 0.089 3.911 10 C -0.149 4.149 11 C -0.107 4.107 12 C -0.113 4.113 13 C -0.120 4.120 14 C 0.163 3.837 15 H 0.033 0.967 16 N -0.729 5.729 17 C -0.235 4.235 18 H 0.058 0.942 19 C -0.069 4.069 20 N -0.965 5.965 21 Si 0.965 3.035 22 H -0.283 1.283 23 H -0.288 1.288 24 H -0.283 1.283 25 C 0.115 3.885 26 C -0.167 4.167 27 C 0.148 3.852 28 N -0.534 5.534 29 H 0.123 0.877 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.165 0.835 33 H 0.089 0.911 34 H 0.100 0.900 35 H 0.074 0.926 36 H 0.105 0.895 37 H 0.076 0.924 38 H 0.071 0.929 39 H 0.058 0.942 40 H 0.041 0.959 41 H 0.083 0.917 42 H 0.044 0.956 43 H 0.376 0.624 44 H 0.252 0.748 45 H 0.035 0.965 46 H 0.100 0.900 47 H 0.144 0.856 48 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.350 -10.274 -6.606 29.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.221 6.221 3 C 0.132 3.868 4 C -0.184 4.184 5 C -0.064 4.064 6 C 0.334 3.666 7 O -0.445 6.445 8 N -0.316 5.316 9 C -0.032 4.032 10 C -0.186 4.186 11 C -0.145 4.145 12 C -0.151 4.151 13 C -0.158 4.158 14 C 0.054 3.946 15 H 0.051 0.949 16 N -0.370 5.370 17 C -0.367 4.367 18 H 0.076 0.924 19 C -0.261 4.261 20 N -0.615 5.615 21 Si 0.794 3.206 22 H -0.209 1.209 23 H -0.213 1.213 24 H -0.210 1.210 25 C -0.010 4.010 26 C -0.188 4.188 27 C -0.007 4.007 28 N -0.258 5.258 29 H 0.141 0.859 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.183 0.817 33 H 0.107 0.893 34 H 0.118 0.882 35 H 0.092 0.908 36 H 0.123 0.877 37 H 0.095 0.905 38 H 0.089 0.911 39 H 0.077 0.923 40 H 0.060 0.940 41 H 0.101 0.899 42 H 0.063 0.937 43 H 0.209 0.791 44 H 0.061 0.939 45 H 0.054 0.946 46 H 0.118 0.882 47 H 0.162 0.838 48 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -26.859 -10.069 -6.173 29.341 hybrid contribution 1.787 0.977 0.954 2.249 sum -25.072 -9.092 -5.220 27.175 Atomic orbital electron populations 1.23111 0.75464 1.04836 1.02485 1.86242 1.24592 1.23620 1.87604 1.19773 0.89009 0.85371 0.92599 1.21519 0.92673 0.98626 1.05547 1.20059 0.92482 0.94583 0.99284 1.18623 0.86894 0.81968 0.79086 1.90847 1.74067 1.33228 1.46349 1.47791 1.06497 1.28734 1.48532 1.22399 0.98220 0.90452 0.92155 1.22350 1.01301 1.00236 0.94693 1.21703 1.00484 0.93117 0.99147 1.21608 0.94568 0.98909 0.99992 1.21991 0.97374 1.02173 0.94226 1.20717 0.84798 0.95419 0.93664 0.94930 1.42484 1.02063 1.64343 1.28080 1.19416 0.91204 1.25116 1.00926 0.92359 1.25418 0.95646 1.03078 1.01986 1.69776 0.99095 1.52034 1.40612 0.85344 0.76540 0.78734 0.79970 1.20898 1.21324 1.20996 1.22072 0.77928 1.00835 1.00165 1.22239 0.95018 0.99233 1.02346 1.22864 0.91970 0.94323 0.91535 1.67283 1.41261 0.99190 1.18085 0.85901 0.92483 0.92002 0.81715 0.89282 0.88167 0.90816 0.87702 0.90536 0.91057 0.92280 0.94010 0.89884 0.93682 0.79135 0.93901 0.94600 0.88227 0.83837 0.78277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.40 10.38 113.37 1.18 1.58 16 2 O -0.31 -5.53 10.47 -90.10 -0.94 -6.48 16 3 C 0.31 6.27 7.49 84.80 0.63 6.90 16 4 C -0.16 -3.39 7.51 22.75 0.17 -3.22 16 5 C -0.05 -1.36 5.29 -19.90 -0.11 -1.46 16 6 C 0.55 18.15 6.01 86.88 0.52 18.67 16 7 O -0.57 -24.88 15.37 -3.76 -0.06 -24.94 16 8 N -0.58 -16.97 1.70 -828.00 -1.40 -18.37 16 9 C 0.09 1.69 4.28 86.75 0.37 2.07 16 10 C -0.15 -2.58 5.45 30.70 0.17 -2.41 16 11 C -0.11 -1.99 5.75 30.88 0.18 -1.81 16 12 C -0.11 -3.02 5.40 30.73 0.17 -2.86 16 13 C -0.12 -3.98 4.97 30.68 0.15 -3.82 16 14 C 0.16 6.91 2.38 44.87 0.11 7.02 16 15 H 0.03 1.61 5.93 -2.39 -0.01 1.60 16 16 N -0.73 -38.54 5.12 -323.53 -1.66 -40.20 16 17 C -0.23 -14.02 9.89 84.04 0.83 -13.19 16 18 H 0.06 3.61 7.83 -2.91 -0.02 3.59 16 19 C -0.07 -4.14 5.50 84.86 0.47 -3.67 16 20 N -0.96 -60.17 13.06 21.65 0.28 -59.89 16 21 Si 0.96 49.06 29.55 68.60 2.03 51.09 16 22 H -0.28 -14.08 7.11 99.48 0.71 -13.37 16 23 H -0.29 -14.29 7.11 99.48 0.71 -13.59 16 24 H -0.28 -14.17 7.11 99.48 0.71 -13.46 16 25 C 0.11 4.20 4.74 85.90 0.41 4.61 16 26 C -0.17 -3.75 9.70 22.63 0.22 -3.53 16 27 C 0.15 2.59 11.17 84.62 0.94 3.53 16 28 N -0.53 -10.39 9.18 -309.13 -2.84 -13.23 16 29 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.06 0.68 8.10 -2.38 -0.02 0.66 16 31 H 0.06 0.68 8.10 -2.39 -0.02 0.66 16 32 H 0.17 2.91 5.66 -2.91 -0.02 2.89 16 33 H 0.09 1.34 7.58 -2.39 -0.02 1.32 16 34 H 0.10 1.70 4.76 -2.38 -0.01 1.69 16 35 H 0.07 1.58 3.35 -2.39 -0.01 1.57 16 36 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16 38 H 0.07 1.16 7.87 -2.39 -0.02 1.14 16 39 H 0.06 1.51 8.14 -2.38 -0.02 1.50 16 40 H 0.04 1.29 5.37 -2.39 -0.01 1.27 16 41 H 0.08 2.43 5.47 -2.39 -0.01 2.41 16 42 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 43 H 0.38 20.64 7.80 -92.70 -0.72 19.92 16 44 H 0.25 15.23 8.31 -92.71 -0.77 14.46 16 45 H 0.04 1.60 8.10 -2.39 -0.02 1.58 16 46 H 0.10 3.16 6.06 -2.39 -0.01 3.14 16 47 H 0.14 3.31 8.02 -2.92 -0.02 3.28 16 48 H 0.20 1.98 8.06 -2.91 -0.02 1.96 16 Total: -1.00 -76.74 368.78 2.09 -74.65 By element: Atomic # 1 Polarization: 28.70 SS G_CDS: 0.27 Total: 28.97 kcal Atomic # 6 Polarization: 1.98 SS G_CDS: 6.41 Total: 8.39 kcal Atomic # 7 Polarization: -126.07 SS G_CDS: -5.62 Total: -131.68 kcal Atomic # 8 Polarization: -30.41 SS G_CDS: -1.00 Total: -31.42 kcal Atomic # 14 Polarization: 49.06 SS G_CDS: 2.03 Total: 51.09 kcal Total: -76.74 2.09 -74.65 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088340623.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.698 kcal (2) G-P(sol) polarization free energy of solvation -76.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds