Wall clock time and date at job start Tue Mar 31 2020 17:29:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35503 * 116.99819 * 2 1 4 4 C 1.39166 * 119.52537 * 180.02562 * 3 2 1 5 5 C 1.37959 * 119.26380 * 180.02562 * 4 3 2 6 6 C 1.40287 * 118.35218 * 359.97438 * 5 4 3 7 7 C 1.47621 * 120.49131 * 179.97438 * 6 5 4 8 8 O 1.21585 * 119.99642 * 189.12612 * 7 6 5 9 9 N 1.34777 * 120.00196 * 9.12882 * 7 6 5 10 10 C 1.46953 * 120.36062 * 353.01869 * 9 7 6 11 11 C 1.52338 * 109.07015 * 68.32848 * 10 9 7 12 12 C 1.53801 * 109.15656 * 72.67857 * 11 10 9 13 13 C 1.52445 * 109.43858 * 282.16044 * 12 11 10 14 14 C 1.53964 * 110.71845 * 113.72844 * 13 12 11 15 15 C 1.52926 * 109.75228 * 315.63793 * 14 13 12 16 16 H 1.09001 * 109.46558 * 47.10419 * 15 14 13 17 17 N 1.46501 * 109.54640 * 167.18005 * 15 14 13 18 18 C 1.36931 * 120.00751 * 204.89967 * 17 15 14 19 19 H 1.08003 * 119.99469 * 359.97438 * 18 17 15 20 20 C 1.38810 * 120.00531 * 180.02562 * 18 17 15 21 21 N 1.31621 * 119.99871 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99999 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47539 * 59.99600 * 22 20 18 24 24 H 1.48498 * 109.47058 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.47124 * 299.99417 * 22 20 18 26 26 C 1.45322 * 120.35808 * 173.00074 * 9 7 6 27 27 C 1.39518 * 119.00771 * 0.26083 * 6 5 4 28 28 N 1.31672 * 120.62583 * 359.46640 * 27 6 5 29 29 H 1.08994 * 109.47479 * 60.00216 * 1 2 3 30 30 H 1.09004 * 109.46651 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47290 * 299.99692 * 1 2 3 32 32 H 1.07995 * 120.37155 * 0.03892 * 4 3 2 33 33 H 1.07996 * 120.82084 * 180.02562 * 5 4 3 34 34 H 1.09002 * 109.53729 * 188.21056 * 10 9 7 35 35 H 1.09001 * 109.54044 * 308.45106 * 10 9 7 36 36 H 1.08998 * 109.52743 * 192.58106 * 11 10 9 37 37 H 1.09006 * 109.52660 * 312.71528 * 11 10 9 38 38 H 1.09004 * 109.47546 * 42.15041 * 12 11 10 39 39 H 1.09004 * 109.47893 * 162.16718 * 12 11 10 40 40 H 1.09002 * 109.23144 * 234.04216 * 13 12 11 41 41 H 1.08993 * 109.23117 * 353.45100 * 13 12 11 42 42 H 1.09002 * 109.42631 * 75.71148 * 14 13 12 43 43 H 1.08998 * 109.43157 * 195.56040 * 14 13 12 44 44 H 0.97008 * 119.99611 * 24.89594 * 17 15 14 45 45 H 0.96994 * 119.99895 * 180.02562 * 21 20 18 46 46 H 1.09002 * 109.67900 * 343.10116 * 26 9 7 47 47 H 1.09001 * 109.67667 * 103.60142 * 26 9 7 48 48 H 1.07998 * 119.68698 * 179.72375 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0441 1.2074 0.0000 4 6 3.4344 1.2687 -0.0005 5 6 4.0551 2.5008 0.0000 6 6 3.2522 3.6512 0.0005 7 6 3.8666 4.9935 0.0017 8 8 3.1743 5.9788 0.1692 9 7 5.1951 5.1267 -0.1829 10 6 6.0606 3.9402 -0.2332 11 6 5.7532 3.1532 -1.5008 12 6 6.3115 3.9140 -2.7152 13 6 5.3793 5.0691 -3.0626 14 6 6.0731 6.4216 -2.8179 15 6 6.8092 6.3898 -1.4778 16 1 7.3884 5.4694 -1.4033 17 7 7.7087 7.5425 -1.3852 18 6 8.8100 7.4882 -0.5734 19 1 9.0154 6.5957 -0.0009 20 6 9.6620 8.5806 -0.4853 21 7 9.4114 9.6685 -1.1825 22 14 11.1647 8.5062 0.6217 23 1 12.0485 7.3964 0.1828 24 1 11.9052 9.7907 0.5382 25 1 10.7355 8.2721 2.0240 26 6 5.7869 6.4452 -0.3348 27 6 1.8644 3.5077 0.0060 28 7 1.3137 2.3117 0.0001 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 4.0210 0.3620 -0.0016 33 1 5.1323 2.5777 -0.0008 34 1 7.1053 4.2512 -0.2415 35 1 5.8724 3.3144 0.6392 36 1 6.2196 2.1698 -1.4412 37 1 4.6743 3.0388 -1.6060 38 1 7.3006 4.3046 -2.4760 39 1 6.3841 3.2369 -3.5663 40 1 5.0938 4.9969 -4.1121 41 1 4.4851 5.0077 -2.4424 42 1 6.7871 6.6129 -3.6190 43 1 5.3258 7.2149 -2.8020 44 1 7.5241 8.3442 -1.8992 45 1 10.0069 10.4316 -1.1213 46 1 5.0095 7.1713 -0.5727 47 1 6.2862 6.7322 0.5906 48 1 1.2359 4.3860 0.0110 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088344268.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:29:54 Heat of formation + Delta-G solvation = 49.542997 kcal Electronic energy + Delta-G solvation = -30095.546209 eV Core-core repulsion = 26154.385393 eV Total energy + Delta-G solvation = -3941.160815 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.65 seconds Orbital eigenvalues (eV) -41.68330 -40.14243 -38.07444 -37.63841 -35.59623 -33.87622 -33.21927 -31.90106 -30.99344 -30.10398 -27.87202 -27.16849 -26.53063 -24.57249 -23.70293 -23.32496 -22.47571 -21.47963 -19.99063 -18.90404 -18.70664 -17.42574 -17.28780 -16.89112 -16.32251 -16.30009 -15.68504 -15.17978 -14.87454 -14.62402 -14.41200 -14.29003 -14.12665 -14.06674 -13.55747 -13.40275 -13.15182 -12.83177 -12.72275 -12.50090 -12.19818 -11.94284 -11.70220 -11.53483 -11.38362 -11.16000 -11.01190 -10.87493 -10.80418 -10.52537 -10.36713 -10.26367 -10.15094 -9.89332 -9.74027 -9.57310 -9.54245 -8.99912 -8.78411 -8.28287 -7.04089 -5.83170 -3.13247 0.59570 0.98550 2.75348 2.86640 3.15156 3.39409 3.43987 3.45404 3.68827 4.02713 4.38391 4.45279 4.53256 4.66454 4.75869 4.79981 4.82254 4.95165 5.00421 5.05698 5.26408 5.29427 5.31497 5.33042 5.43606 5.46395 5.53782 5.61270 5.66504 5.77784 5.81797 5.85944 5.92012 5.98650 6.07004 6.08059 6.25942 6.29626 6.40866 6.48811 6.58629 6.73713 6.77003 6.89209 7.02814 7.50421 7.60627 7.61639 8.30647 8.35110 9.45916 10.02213 10.36628 11.38891 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.022695 B = 0.002865 C = 0.002858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.472388 B = 9771.807711 C = 9794.683430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.307 6.307 3 C 0.337 3.663 4 C -0.212 4.212 5 C -0.054 4.054 6 C -0.230 4.230 7 C 0.564 3.436 8 O -0.541 6.541 9 N -0.588 5.588 10 C 0.083 3.917 11 C -0.162 4.162 12 C -0.125 4.125 13 C -0.114 4.114 14 C -0.124 4.124 15 C 0.159 3.841 16 H 0.065 0.935 17 N -0.719 5.719 18 C -0.245 4.245 19 H 0.070 0.930 20 C -0.009 4.009 21 N -0.929 5.929 22 Si 0.906 3.094 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.285 1.285 26 C 0.089 3.911 27 C 0.202 3.798 28 N -0.551 5.551 29 H 0.060 0.940 30 H 0.096 0.904 31 H 0.060 0.940 32 H 0.145 0.855 33 H 0.205 0.795 34 H 0.105 0.895 35 H 0.086 0.914 36 H 0.080 0.920 37 H 0.086 0.914 38 H 0.082 0.918 39 H 0.059 0.941 40 H 0.052 0.948 41 H 0.058 0.942 42 H 0.065 0.935 43 H 0.058 0.942 44 H 0.386 0.614 45 H 0.257 0.743 46 H 0.081 0.919 47 H 0.070 0.930 48 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.069 -20.177 -0.337 24.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.213 6.213 3 C 0.159 3.841 4 C -0.232 4.232 5 C -0.078 4.078 6 C -0.236 4.236 7 C 0.352 3.648 8 O -0.420 6.420 9 N -0.320 5.320 10 C -0.040 4.040 11 C -0.200 4.200 12 C -0.163 4.163 13 C -0.153 4.153 14 C -0.162 4.162 15 C 0.048 3.952 16 H 0.083 0.917 17 N -0.359 5.359 18 C -0.376 4.376 19 H 0.088 0.912 20 C -0.206 4.206 21 N -0.576 5.576 22 Si 0.737 3.263 23 H -0.212 1.212 24 H -0.217 1.217 25 H -0.212 1.212 26 C -0.036 4.036 27 C 0.044 3.956 28 N -0.275 5.275 29 H 0.079 0.921 30 H 0.114 0.886 31 H 0.079 0.921 32 H 0.163 0.837 33 H 0.221 0.779 34 H 0.123 0.877 35 H 0.104 0.896 36 H 0.099 0.901 37 H 0.104 0.896 38 H 0.100 0.900 39 H 0.078 0.922 40 H 0.071 0.929 41 H 0.077 0.923 42 H 0.084 0.916 43 H 0.076 0.924 44 H 0.219 0.781 45 H 0.067 0.933 46 H 0.099 0.901 47 H 0.088 0.912 48 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -14.058 -20.005 -0.151 24.451 hybrid contribution 1.280 0.444 0.464 1.432 sum -12.778 -19.562 0.313 23.367 Atomic orbital electron populations 1.22895 0.77044 1.02989 1.02731 1.86209 1.23149 1.24776 1.87151 1.20214 0.89687 0.84739 0.89475 1.21064 0.91681 0.99658 1.10840 1.24195 1.05227 0.90557 0.87789 1.20839 0.95536 0.94491 1.12745 1.17847 0.82068 0.87848 0.77026 1.90775 1.61626 1.39552 1.50043 1.47692 1.05816 1.08132 1.70335 1.22249 0.97513 0.87209 0.96983 1.22958 1.02375 0.99058 0.95598 1.21840 1.00620 0.96991 0.96801 1.21643 0.98610 0.94655 1.00344 1.22029 0.99352 0.96322 0.98519 1.20916 0.90135 0.93001 0.91145 0.91735 1.42406 1.25886 1.14116 1.53498 1.19136 1.00397 0.99140 1.18961 0.91243 1.24759 0.99380 0.96221 1.00232 1.69649 1.39198 1.04525 1.44250 0.86290 0.82845 0.76737 0.80410 1.21228 1.21677 1.21214 1.22697 0.97434 0.81970 1.01468 1.22608 0.91744 0.93612 0.87591 1.67422 1.40335 0.98590 1.21156 0.92105 0.88581 0.92120 0.83689 0.77947 0.87706 0.89632 0.90131 0.89645 0.89993 0.92241 0.92912 0.92319 0.91644 0.92370 0.78061 0.93328 0.90073 0.91194 0.81235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.29 10.37 101.05 1.05 1.33 16 2 O -0.31 -3.11 10.46 -18.20 -0.19 -3.30 16 3 C 0.34 3.78 7.49 -16.96 -0.13 3.65 16 4 C -0.21 -2.02 10.02 -39.34 -0.39 -2.41 16 5 C -0.05 -0.54 5.82 -38.91 -0.23 -0.76 16 6 C -0.23 -2.89 5.21 -104.82 -0.55 -3.43 16 7 C 0.56 8.64 6.28 -12.43 -0.08 8.56 16 8 O -0.54 -10.19 15.89 5.29 0.08 -10.11 16 9 N -0.59 -8.47 1.68 -201.64 -0.34 -8.81 16 10 C 0.08 0.89 4.78 -4.13 -0.02 0.88 16 11 C -0.16 -1.51 3.65 -26.65 -0.10 -1.61 16 12 C -0.13 -1.41 5.49 -26.60 -0.15 -1.55 16 13 C -0.11 -1.52 5.41 -26.51 -0.14 -1.66 16 14 C -0.12 -2.01 5.22 -26.27 -0.14 -2.15 16 15 C 0.16 2.88 2.30 -67.74 -0.16 2.72 16 16 H 0.07 1.11 3.29 -51.93 -0.17 0.94 16 17 N -0.72 -16.94 5.13 -53.24 -0.27 -17.21 16 18 C -0.25 -6.39 9.88 -15.06 -0.15 -6.53 16 19 H 0.07 1.72 7.83 -52.48 -0.41 1.31 16 20 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 21 N -0.93 -27.26 13.06 55.49 0.72 -26.54 16 22 Si 0.91 21.60 29.55 -169.99 -5.02 16.57 16 23 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 25 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 26 C 0.09 1.59 5.56 -4.44 -0.02 1.56 16 27 C 0.20 2.53 10.76 -17.14 -0.18 2.34 16 28 N -0.55 -6.70 9.18 -12.97 -0.12 -6.82 16 29 H 0.06 0.46 8.10 -51.93 -0.42 0.04 16 30 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.46 8.10 -51.93 -0.42 0.04 16 32 H 0.15 1.03 8.06 -52.49 -0.42 0.61 16 33 H 0.21 1.64 1.82 -99.63 -0.18 1.46 16 34 H 0.10 1.21 6.07 -51.93 -0.32 0.89 16 35 H 0.09 0.73 5.74 -51.93 -0.30 0.44 16 36 H 0.08 0.53 7.99 -51.93 -0.41 0.12 16 37 H 0.09 0.87 4.04 -52.19 -0.21 0.66 16 38 H 0.08 1.04 5.47 -51.93 -0.28 0.75 16 39 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.06 0.83 5.38 -51.93 -0.28 0.55 16 42 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 43 H 0.06 0.99 7.87 -51.93 -0.41 0.58 16 44 H 0.39 9.89 7.80 -40.82 -0.32 9.57 16 45 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 46 H 0.08 1.60 6.88 -51.93 -0.36 1.24 16 47 H 0.07 1.40 8.09 -51.93 -0.42 0.98 16 48 H 0.17 2.06 7.68 -52.49 -0.40 1.66 16 LS Contribution 361.07 15.07 5.44 5.44 Total: -1.00 -31.72 361.07 -7.73 -39.45 By element: Atomic # 1 Polarization: 17.29 SS G_CDS: -6.56 Total: 10.73 kcal Atomic # 6 Polarization: 2.07 SS G_CDS: -1.48 Total: 0.59 kcal Atomic # 7 Polarization: -59.37 SS G_CDS: -0.01 Total: -59.37 kcal Atomic # 8 Polarization: -13.31 SS G_CDS: -0.11 Total: -13.41 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.72 -7.73 -39.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088344268.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.997 kcal (2) G-P(sol) polarization free energy of solvation -31.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.454 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.65 seconds