Wall clock time and date at job start Tue Mar 31 2020 17:43:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35743 * 117.00194 * 2 1 4 4 C 1.39213 * 120.81481 * 359.97438 * 3 2 1 5 5 C 1.38314 * 119.29120 * 180.02562 * 4 3 2 6 6 N 1.31609 * 120.96819 * 0.02562 * 5 4 3 7 7 C 1.32802 * 121.78589 * 359.69838 * 6 5 4 8 8 C 1.48180 * 119.70347 * 180.29620 * 7 6 5 9 9 O 1.21508 * 120.00162 * 180.29037 * 8 7 6 10 10 N 1.34774 * 119.99704 * 0.28885 * 8 7 6 11 11 C 1.46962 * 120.35870 * 359.97438 * 10 8 7 12 12 C 1.52342 * 109.08454 * 68.37956 * 11 10 8 13 13 C 1.53798 * 109.16387 * 72.70428 * 12 11 10 14 14 C 1.52449 * 109.42315 * 282.13042 * 13 12 11 15 15 C 1.53964 * 110.73332 * 113.72653 * 14 13 12 16 16 C 1.52880 * 109.71915 * 315.64683 * 15 14 13 17 17 H 1.09008 * 109.47618 * 47.10240 * 16 15 14 18 18 N 1.46499 * 109.48089 * 167.12358 * 16 15 14 19 19 C 1.36933 * 119.99961 * 205.00055 * 18 16 15 20 20 H 1.08004 * 120.00177 * 0.02562 * 19 18 16 21 21 C 1.38808 * 120.00190 * 179.97438 * 19 18 16 22 22 N 1.31616 * 119.99864 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 120.00271 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.46814 * 60.00119 * 23 21 19 25 25 H 1.48500 * 109.47078 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.47247 * 300.00221 * 23 21 19 27 27 C 1.45344 * 120.35499 * 179.72909 * 10 8 7 28 28 C 1.39102 * 120.59884 * 0.58819 * 7 6 5 29 29 H 1.09000 * 109.46848 * 59.99626 * 1 2 3 30 30 H 1.08997 * 109.47200 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47308 * 299.99901 * 1 2 3 32 32 H 1.08005 * 120.35234 * 0.04285 * 4 3 2 33 33 H 1.07994 * 119.51333 * 179.97438 * 5 4 3 34 34 H 1.08997 * 109.53998 * 188.26370 * 11 10 8 35 35 H 1.08995 * 109.53321 * 308.42094 * 11 10 8 36 36 H 1.09000 * 109.52459 * 192.61122 * 12 11 10 37 37 H 1.09007 * 109.52381 * 312.73573 * 12 11 10 38 38 H 1.08997 * 109.47623 * 42.11013 * 13 12 11 39 39 H 1.09001 * 109.47977 * 162.14690 * 13 12 11 40 40 H 1.08996 * 109.22607 * 234.05170 * 14 13 12 41 41 H 1.08997 * 109.22101 * 353.44757 * 14 13 12 42 42 H 1.09000 * 109.42678 * 75.72713 * 15 14 13 43 43 H 1.09007 * 109.42899 * 195.57057 * 15 14 13 44 44 H 0.96995 * 119.99726 * 25.00481 * 18 16 15 45 45 H 0.97000 * 120.00053 * 179.97438 * 22 21 19 46 46 H 1.09006 * 109.66908 * 343.07205 * 27 10 8 47 47 H 1.08998 * 109.67916 * 103.61051 * 27 10 8 48 48 H 1.08002 * 120.51064 * 179.70863 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2095 0.0000 4 6 1.3038 2.3877 -0.0005 5 6 1.9643 3.6029 -0.0011 6 7 3.2792 3.6590 -0.0016 7 6 4.0262 2.5610 0.0044 8 6 5.5034 2.6779 0.0101 9 8 6.1921 1.6769 0.0102 10 7 6.0830 3.8947 0.0153 11 6 5.2576 5.1106 0.0146 12 6 4.5334 5.2218 1.3503 13 6 5.5438 5.6145 2.4413 14 6 6.3540 4.3884 2.8469 15 6 7.8311 4.5539 2.4452 16 6 7.9199 5.1123 1.0248 17 1 7.2390 5.9575 0.9233 18 7 9.2909 5.5546 0.7586 19 6 9.5282 6.5196 -0.1835 20 1 8.7047 6.9549 -0.7301 21 6 10.8272 6.9391 -0.4354 22 7 11.8308 6.4090 0.2309 23 14 11.1509 8.2560 -1.7202 24 1 10.4384 9.5026 -1.3415 25 1 12.6096 8.5232 -1.7984 26 1 10.6622 7.7886 -3.0422 27 6 7.5311 4.0184 0.0269 28 6 3.4346 1.3021 -0.0009 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 0.2243 2.3532 -0.0003 33 1 1.3927 4.5191 -0.0019 34 1 5.8945 5.9835 -0.1284 35 1 4.5281 5.0554 -0.7933 36 1 3.7571 5.9838 1.2815 37 1 4.0807 4.2622 1.6002 38 1 6.2147 6.3822 2.0559 39 1 5.0096 6.0006 3.3094 40 1 6.2884 4.2561 3.9268 41 1 5.9445 3.5079 2.3519 42 1 8.3199 5.2407 3.1361 43 1 8.3285 3.5848 2.4856 44 1 10.0305 5.1639 1.2496 45 1 12.7386 6.7019 0.0547 46 1 7.9779 3.0711 0.3290 47 1 7.8842 4.2907 -0.9677 48 1 4.0435 0.4101 -0.0009 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088358077.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:43:08 Heat of formation + Delta-G solvation = 14.659528 kcal Electronic energy + Delta-G solvation = -30038.325617 eV Core-core repulsion = 26095.652141 eV Total energy + Delta-G solvation = -3942.673476 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.30884 -39.98346 -38.38269 -37.51253 -34.82037 -33.72853 -32.38681 -31.86029 -31.41173 -29.81068 -28.13433 -27.15999 -26.12556 -24.54258 -23.64839 -23.26617 -22.34883 -21.32844 -20.15969 -18.79898 -18.10019 -17.48460 -17.15362 -16.41757 -16.29669 -16.24672 -15.69947 -15.49857 -15.00471 -14.66292 -14.37052 -14.17874 -14.13160 -13.84870 -13.55060 -13.31575 -13.13298 -12.89880 -12.66825 -12.35629 -12.26235 -12.06830 -11.72319 -11.40365 -11.34175 -11.15263 -10.81685 -10.71471 -10.52635 -10.35266 -10.19873 -10.13147 -9.98918 -9.71201 -9.59031 -9.48078 -9.39894 -9.07426 -8.90110 -8.10637 -6.95860 -5.76069 -3.05471 0.44654 1.00872 2.61246 2.79182 3.30040 3.44980 3.49401 3.50234 3.73307 4.01464 4.25971 4.47424 4.59904 4.63105 4.65048 4.82680 4.85819 4.98540 5.09321 5.25947 5.29677 5.34856 5.49141 5.51201 5.58156 5.68151 5.70595 5.77522 5.86824 5.95754 6.00746 6.07041 6.09996 6.21963 6.34777 6.37312 6.41964 6.46537 6.58078 6.69291 6.75718 6.79324 6.87806 6.89652 7.15561 7.54435 7.69128 7.74026 8.37797 8.42631 9.53217 10.10263 10.45110 11.46174 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.021479 B = 0.002897 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.292885 B = 9663.559382 C = 9730.373259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.309 6.309 3 C 0.158 3.842 4 C -0.245 4.245 5 C 0.123 3.877 6 N -0.459 5.459 7 C 0.117 3.883 8 C 0.560 3.440 9 O -0.539 6.539 10 N -0.572 5.572 11 C 0.117 3.883 12 C -0.114 4.114 13 C -0.135 4.135 14 C -0.112 4.112 15 C -0.123 4.123 16 C 0.158 3.842 17 H 0.068 0.932 18 N -0.719 5.719 19 C -0.242 4.242 20 H 0.070 0.930 21 C -0.011 4.011 22 N -0.930 5.930 23 Si 0.906 3.094 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.286 1.286 27 C 0.086 3.914 28 C -0.144 4.144 29 H 0.059 0.941 30 H 0.104 0.896 31 H 0.059 0.941 32 H 0.140 0.860 33 H 0.164 0.836 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.065 0.935 37 H 0.072 0.928 38 H 0.077 0.923 39 H 0.052 0.948 40 H 0.049 0.951 41 H 0.055 0.945 42 H 0.064 0.936 43 H 0.056 0.944 44 H 0.385 0.615 45 H 0.256 0.744 46 H 0.080 0.920 47 H 0.071 0.929 48 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.615 -7.767 2.018 27.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.220 6.220 3 C 0.104 3.896 4 C -0.266 4.266 5 C -0.036 4.036 6 N -0.174 5.174 7 C -0.019 4.019 8 C 0.346 3.654 9 O -0.417 6.417 10 N -0.302 5.302 11 C -0.005 4.005 12 C -0.153 4.153 13 C -0.172 4.172 14 C -0.150 4.150 15 C -0.162 4.162 16 C 0.048 3.952 17 H 0.086 0.914 18 N -0.359 5.359 19 C -0.373 4.373 20 H 0.088 0.912 21 C -0.207 4.207 22 N -0.578 5.578 23 Si 0.737 3.263 24 H -0.212 1.212 25 H -0.217 1.217 26 H -0.213 1.213 27 C -0.039 4.039 28 C -0.166 4.166 29 H 0.077 0.923 30 H 0.122 0.878 31 H 0.077 0.923 32 H 0.158 0.842 33 H 0.181 0.819 34 H 0.100 0.900 35 H 0.103 0.897 36 H 0.084 0.916 37 H 0.090 0.910 38 H 0.095 0.905 39 H 0.070 0.930 40 H 0.067 0.933 41 H 0.074 0.926 42 H 0.082 0.918 43 H 0.075 0.925 44 H 0.219 0.781 45 H 0.066 0.934 46 H 0.099 0.901 47 H 0.089 0.911 48 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -25.663 -7.564 1.881 26.820 hybrid contribution -0.327 -0.154 -0.573 0.677 sum -25.990 -7.717 1.309 27.144 Atomic orbital electron populations 1.23153 0.77662 1.04496 1.01657 1.86098 1.21927 1.26105 1.87878 1.19194 0.92101 0.84797 0.93460 1.22370 1.01600 0.93288 1.09347 1.22716 0.90260 0.97110 0.93479 1.68556 1.06532 1.30014 1.12324 1.21108 0.94869 0.88463 0.97471 1.17750 0.85510 0.83972 0.78212 1.90778 1.63250 1.36297 1.51328 1.47803 1.08018 1.05344 1.69032 1.21801 0.93547 0.86609 0.98562 1.22136 0.97020 1.01692 0.94417 1.21974 0.98165 0.98629 0.98422 1.21630 0.95722 0.98141 0.99543 1.22023 0.95431 1.00951 0.97760 1.20847 0.88996 0.94308 0.91062 0.91418 1.42413 1.01591 1.45630 1.46308 1.19167 0.92174 1.12749 1.13202 0.91212 1.24749 0.95670 1.00278 1.00032 1.69653 0.98618 1.45579 1.43964 0.86288 0.76880 0.81664 0.81463 1.21246 1.21731 1.21254 1.22648 0.76959 1.02189 1.02091 1.21397 0.91893 0.99862 1.03407 0.92276 0.87774 0.92264 0.84195 0.81858 0.90003 0.89667 0.91650 0.90979 0.90489 0.92959 0.93261 0.92607 0.91758 0.92505 0.78119 0.93413 0.90126 0.91126 0.82874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.12 9.84 101.05 0.99 1.11 16 2 O -0.31 -2.85 10.51 -18.94 -0.20 -3.05 16 3 C 0.16 1.60 6.73 -38.85 -0.26 1.34 16 4 C -0.24 -1.90 9.12 -39.19 -0.36 -2.25 16 5 C 0.12 1.02 11.17 -17.62 -0.20 0.83 16 6 N -0.46 -5.21 3.72 -9.87 -0.04 -5.24 16 7 C 0.12 1.61 5.94 -83.04 -0.49 1.11 16 8 C 0.56 9.44 6.24 -12.18 -0.08 9.36 16 9 O -0.54 -10.70 15.76 5.36 0.08 -10.61 16 10 N -0.57 -9.40 1.69 -175.57 -0.30 -9.69 16 11 C 0.12 1.62 4.88 -4.13 -0.02 1.60 16 12 C -0.11 -1.40 4.31 -26.65 -0.11 -1.51 16 13 C -0.13 -1.82 5.49 -26.60 -0.15 -1.96 16 14 C -0.11 -1.69 5.40 -26.51 -0.14 -1.83 16 15 C -0.12 -2.18 5.21 -26.29 -0.14 -2.32 16 16 C 0.16 3.12 2.29 -67.95 -0.16 2.96 16 17 H 0.07 1.31 3.29 -51.92 -0.17 1.14 16 18 N -0.72 -17.79 5.12 -53.44 -0.27 -18.06 16 19 C -0.24 -6.55 9.88 -15.06 -0.15 -6.70 16 20 H 0.07 1.82 7.83 -52.48 -0.41 1.40 16 21 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 22 N -0.93 -27.98 13.06 55.49 0.72 -27.26 16 23 Si 0.91 22.22 29.55 -169.99 -5.02 17.19 16 24 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 25 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 26 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 27 C 0.09 1.66 5.58 -4.62 -0.03 1.64 16 28 C -0.14 -1.82 9.60 -38.89 -0.37 -2.19 16 29 H 0.06 0.21 7.71 -51.93 -0.40 -0.19 16 30 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.21 7.71 -51.93 -0.40 -0.19 16 32 H 0.14 0.65 6.45 -52.48 -0.34 0.31 16 33 H 0.16 0.83 8.06 -52.49 -0.42 0.41 16 34 H 0.08 1.21 6.07 -51.93 -0.32 0.90 16 35 H 0.09 1.10 6.46 -51.93 -0.34 0.77 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.93 4.72 -51.92 -0.25 0.68 16 38 H 0.08 1.16 5.47 -51.93 -0.28 0.87 16 39 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.06 0.90 5.38 -51.93 -0.28 0.62 16 42 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 43 H 0.06 1.04 7.86 -51.92 -0.41 0.63 16 44 H 0.39 10.26 7.80 -40.82 -0.32 9.95 16 45 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 46 H 0.08 1.68 6.78 -51.93 -0.35 1.33 16 47 H 0.07 1.51 8.08 -51.93 -0.42 1.09 16 48 H 0.15 2.03 7.64 -52.49 -0.40 1.63 16 LS Contribution 364.21 15.07 5.49 5.49 Total: -1.00 -32.40 364.21 -8.03 -40.44 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: -6.75 Total: 10.02 kcal Atomic # 6 Polarization: 2.53 SS G_CDS: -1.75 Total: 0.78 kcal Atomic # 7 Polarization: -60.37 SS G_CDS: 0.12 Total: -60.25 kcal Atomic # 8 Polarization: -13.55 SS G_CDS: -0.11 Total: -13.67 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.40 -8.03 -40.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088358077.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.099 kcal (2) G-P(sol) polarization free energy of solvation -32.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds