Wall clock time and date at job start Tue Mar 31 2020 17:43:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35743 * 117.00194 * 2 1 4 4 C 1.39213 * 120.81481 * 359.97438 * 3 2 1 5 5 C 1.38314 * 119.29120 * 180.02562 * 4 3 2 6 6 N 1.31609 * 120.96819 * 0.02562 * 5 4 3 7 7 C 1.32802 * 121.78589 * 359.69838 * 6 5 4 8 8 C 1.48180 * 119.70347 * 180.29620 * 7 6 5 9 9 O 1.21508 * 120.00162 * 180.29037 * 8 7 6 10 10 N 1.34774 * 119.99704 * 0.28885 * 8 7 6 11 11 C 1.46962 * 120.35870 * 359.97438 * 10 8 7 12 12 C 1.52342 * 109.08454 * 68.37956 * 11 10 8 13 13 C 1.53798 * 109.16387 * 72.70428 * 12 11 10 14 14 C 1.52449 * 109.42315 * 282.13042 * 13 12 11 15 15 C 1.53964 * 110.73332 * 113.72653 * 14 13 12 16 16 C 1.52880 * 109.71915 * 315.64683 * 15 14 13 17 17 H 1.09008 * 109.47618 * 47.10240 * 16 15 14 18 18 N 1.46499 * 109.48089 * 167.12358 * 16 15 14 19 19 C 1.36933 * 119.99961 * 205.00055 * 18 16 15 20 20 H 1.08004 * 120.00177 * 0.02562 * 19 18 16 21 21 C 1.38808 * 120.00190 * 179.97438 * 19 18 16 22 22 N 1.31616 * 119.99864 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 120.00271 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.46814 * 60.00119 * 23 21 19 25 25 H 1.48500 * 109.47078 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.47247 * 300.00221 * 23 21 19 27 27 C 1.45344 * 120.35499 * 179.72909 * 10 8 7 28 28 C 1.39102 * 120.59884 * 0.58819 * 7 6 5 29 29 H 1.09000 * 109.46848 * 59.99626 * 1 2 3 30 30 H 1.08997 * 109.47200 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47308 * 299.99901 * 1 2 3 32 32 H 1.08005 * 120.35234 * 0.04285 * 4 3 2 33 33 H 1.07994 * 119.51333 * 179.97438 * 5 4 3 34 34 H 1.08997 * 109.53998 * 188.26370 * 11 10 8 35 35 H 1.08995 * 109.53321 * 308.42094 * 11 10 8 36 36 H 1.09000 * 109.52459 * 192.61122 * 12 11 10 37 37 H 1.09007 * 109.52381 * 312.73573 * 12 11 10 38 38 H 1.08997 * 109.47623 * 42.11013 * 13 12 11 39 39 H 1.09001 * 109.47977 * 162.14690 * 13 12 11 40 40 H 1.08996 * 109.22607 * 234.05170 * 14 13 12 41 41 H 1.08997 * 109.22101 * 353.44757 * 14 13 12 42 42 H 1.09000 * 109.42678 * 75.72713 * 15 14 13 43 43 H 1.09007 * 109.42899 * 195.57057 * 15 14 13 44 44 H 0.96995 * 119.99726 * 25.00481 * 18 16 15 45 45 H 0.97000 * 120.00053 * 179.97438 * 22 21 19 46 46 H 1.09006 * 109.66908 * 343.07205 * 27 10 8 47 47 H 1.08998 * 109.67916 * 103.61051 * 27 10 8 48 48 H 1.08002 * 120.51064 * 179.70863 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2095 0.0000 4 6 1.3038 2.3877 -0.0005 5 6 1.9643 3.6029 -0.0011 6 7 3.2792 3.6590 -0.0016 7 6 4.0262 2.5610 0.0044 8 6 5.5034 2.6779 0.0101 9 8 6.1921 1.6769 0.0102 10 7 6.0830 3.8947 0.0153 11 6 5.2576 5.1106 0.0146 12 6 4.5334 5.2218 1.3503 13 6 5.5438 5.6145 2.4413 14 6 6.3540 4.3884 2.8469 15 6 7.8311 4.5539 2.4452 16 6 7.9199 5.1123 1.0248 17 1 7.2390 5.9575 0.9233 18 7 9.2909 5.5546 0.7586 19 6 9.5282 6.5196 -0.1835 20 1 8.7047 6.9549 -0.7301 21 6 10.8272 6.9391 -0.4354 22 7 11.8308 6.4090 0.2309 23 14 11.1509 8.2560 -1.7202 24 1 10.4384 9.5026 -1.3415 25 1 12.6096 8.5232 -1.7984 26 1 10.6622 7.7886 -3.0422 27 6 7.5311 4.0184 0.0269 28 6 3.4346 1.3021 -0.0009 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 0.2243 2.3532 -0.0003 33 1 1.3927 4.5191 -0.0019 34 1 5.8945 5.9835 -0.1284 35 1 4.5281 5.0554 -0.7933 36 1 3.7571 5.9838 1.2815 37 1 4.0807 4.2622 1.6002 38 1 6.2147 6.3822 2.0559 39 1 5.0096 6.0006 3.3094 40 1 6.2884 4.2561 3.9268 41 1 5.9445 3.5079 2.3519 42 1 8.3199 5.2407 3.1361 43 1 8.3285 3.5848 2.4856 44 1 10.0305 5.1639 1.2496 45 1 12.7386 6.7019 0.0547 46 1 7.9779 3.0711 0.3290 47 1 7.8842 4.2907 -0.9677 48 1 4.0435 0.4101 -0.0009 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088358077.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:43:07 Heat of formation + Delta-G solvation = -5.590883 kcal Electronic energy + Delta-G solvation = -30039.203741 eV Core-core repulsion = 26095.652141 eV Total energy + Delta-G solvation = -3943.551600 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.28066 -41.00102 -39.25870 -38.83619 -36.46456 -35.09582 -34.02706 -32.67667 -32.40389 -31.45895 -28.94402 -28.31813 -27.47715 -26.00683 -24.76521 -24.37173 -23.54375 -22.71363 -21.26676 -20.11128 -19.20317 -19.03141 -18.40931 -17.57286 -17.23766 -16.93828 -16.83118 -16.67475 -16.37721 -15.82844 -15.67918 -15.47831 -15.15227 -15.06845 -14.82860 -14.63726 -14.33711 -14.26093 -13.81298 -13.64243 -13.36248 -13.03086 -12.96657 -12.76727 -12.65385 -12.55009 -12.29497 -12.23060 -12.06572 -11.85772 -11.72280 -11.50410 -11.36162 -11.25254 -11.13716 -10.80288 -10.33004 -10.32765 -9.81415 -9.52514 -8.98656 -7.92317 -5.22271 -0.42686 0.26163 1.48535 1.51857 1.57527 1.69347 1.80363 2.27252 2.58339 2.81358 3.05716 3.40706 3.63281 3.74915 3.80623 3.88401 4.00628 4.07673 4.11354 4.20290 4.29371 4.34960 4.37588 4.40466 4.45117 4.53270 4.58814 4.68211 4.75641 4.77488 4.81289 4.90128 4.90934 4.98290 5.00399 5.05794 5.26534 5.31182 5.33910 5.39164 5.46669 5.48242 5.52904 5.61878 5.78158 6.18990 6.28143 6.40724 6.75289 7.09632 7.34445 8.07582 8.32220 9.30986 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.021479 B = 0.002897 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.292885 B = 9663.559382 C = 9730.373259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.331 6.331 3 C 0.155 3.845 4 C -0.222 4.222 5 C 0.128 3.872 6 N -0.466 5.466 7 C 0.101 3.899 8 C 0.556 3.444 9 O -0.584 6.584 10 N -0.571 5.571 11 C 0.116 3.884 12 C -0.104 4.104 13 C -0.132 4.132 14 C -0.105 4.105 15 C -0.118 4.118 16 C 0.163 3.837 17 H 0.081 0.919 18 N -0.733 5.733 19 C -0.238 4.238 20 H 0.080 0.920 21 C -0.076 4.076 22 N -0.971 5.971 23 Si 0.972 3.028 24 H -0.273 1.273 25 H -0.299 1.299 26 H -0.280 1.280 27 C 0.102 3.898 28 C -0.163 4.163 29 H 0.075 0.925 30 H 0.118 0.882 31 H 0.076 0.924 32 H 0.182 0.818 33 H 0.208 0.792 34 H 0.071 0.929 35 H 0.101 0.899 36 H 0.098 0.902 37 H 0.071 0.929 38 H 0.061 0.939 39 H 0.076 0.924 40 H 0.064 0.936 41 H 0.044 0.956 42 H 0.058 0.942 43 H 0.041 0.959 44 H 0.371 0.629 45 H 0.250 0.750 46 H 0.056 0.944 47 H 0.045 0.955 48 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.592 -6.199 1.983 32.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.242 6.242 3 C 0.101 3.899 4 C -0.242 4.242 5 C -0.031 4.031 6 N -0.182 5.182 7 C -0.035 4.035 8 C 0.344 3.656 9 O -0.464 6.464 10 N -0.301 5.301 11 C -0.005 4.005 12 C -0.142 4.142 13 C -0.169 4.169 14 C -0.143 4.143 15 C -0.156 4.156 16 C 0.054 3.946 17 H 0.099 0.901 18 N -0.371 5.371 19 C -0.369 4.369 20 H 0.098 0.902 21 C -0.268 4.268 22 N -0.621 5.621 23 Si 0.801 3.199 24 H -0.199 1.199 25 H -0.225 1.225 26 H -0.206 1.206 27 C -0.024 4.024 28 C -0.186 4.186 29 H 0.094 0.906 30 H 0.136 0.864 31 H 0.094 0.906 32 H 0.199 0.801 33 H 0.225 0.775 34 H 0.089 0.911 35 H 0.119 0.881 36 H 0.116 0.884 37 H 0.090 0.910 38 H 0.079 0.921 39 H 0.094 0.906 40 H 0.083 0.917 41 H 0.062 0.938 42 H 0.077 0.923 43 H 0.060 0.940 44 H 0.203 0.797 45 H 0.059 0.941 46 H 0.075 0.925 47 H 0.063 0.937 48 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -30.729 -5.988 1.844 31.361 hybrid contribution 0.997 -0.764 -0.550 1.371 sum -29.732 -6.752 1.293 30.516 Atomic orbital electron populations 1.23521 0.75090 1.06180 1.03219 1.86085 1.24574 1.25954 1.87637 1.19219 0.91227 0.86222 0.93201 1.22798 1.03461 0.91798 1.06157 1.23458 0.89091 0.99042 0.91462 1.68443 1.08117 1.28793 1.12845 1.20444 0.92800 0.89657 1.00572 1.18317 0.87271 0.83131 0.76906 1.90738 1.64820 1.37670 1.53206 1.47790 1.06686 1.06569 1.69057 1.22022 0.93261 0.84711 1.00516 1.22086 0.97002 1.02658 0.92426 1.21961 0.98111 0.97005 0.99852 1.21588 0.93555 0.98762 1.00379 1.21935 0.97666 0.99724 0.96262 1.20992 0.86761 0.94682 0.92200 0.90134 1.42623 1.03163 1.45474 1.45878 1.19576 0.92414 1.12231 1.12694 0.90190 1.25580 0.95660 1.03008 1.02560 1.69827 0.98651 1.47552 1.46069 0.85229 0.76148 0.79422 0.79078 1.19870 1.22541 1.20611 1.22116 0.79384 1.00608 1.00271 1.21292 0.93511 0.98795 1.04962 0.90629 0.86355 0.90553 0.80117 0.77518 0.91108 0.88128 0.88389 0.91040 0.92085 0.90552 0.91705 0.93766 0.92330 0.94003 0.79734 0.94119 0.92539 0.93686 0.85180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.08 9.84 113.37 1.12 1.19 16 2 O -0.33 -5.47 10.51 -90.67 -0.95 -6.42 16 3 C 0.16 2.82 6.73 22.75 0.15 2.97 16 4 C -0.22 -2.38 9.12 22.52 0.21 -2.17 16 5 C 0.13 1.49 11.17 84.74 0.95 2.43 16 6 N -0.47 -9.23 3.72 -185.15 -0.69 -9.92 16 7 C 0.10 2.72 5.94 41.85 0.25 2.96 16 8 C 0.56 19.53 6.24 86.89 0.54 20.07 16 9 O -0.58 -25.00 15.76 -3.74 -0.06 -25.06 16 10 N -0.57 -19.28 1.69 -827.68 -1.40 -20.68 16 11 C 0.12 3.05 4.88 86.07 0.42 3.47 16 12 C -0.10 -2.22 4.31 30.65 0.13 -2.09 16 13 C -0.13 -3.25 5.49 30.68 0.17 -3.09 16 14 C -0.10 -3.09 5.40 30.74 0.17 -2.92 16 15 C -0.12 -4.30 5.21 30.88 0.16 -4.14 16 16 C 0.16 6.63 2.29 44.98 0.10 6.73 16 17 H 0.08 3.12 3.29 -2.38 -0.01 3.12 16 18 N -0.73 -37.69 5.12 -323.00 -1.66 -39.35 16 19 C -0.24 -13.11 9.88 84.03 0.83 -12.28 16 20 H 0.08 4.16 7.83 -2.91 -0.02 4.14 16 21 C -0.08 -4.38 5.50 84.86 0.47 -3.92 16 22 N -0.97 -60.35 13.06 21.65 0.28 -60.07 16 23 Si 0.97 46.31 29.55 68.60 2.03 48.33 16 24 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 25 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 26 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 27 C 0.10 4.20 5.58 86.62 0.48 4.68 16 28 C -0.16 -4.16 9.60 22.72 0.22 -3.94 16 29 H 0.08 0.19 7.71 -2.39 -0.02 0.17 16 30 H 0.12 0.32 8.14 -2.39 -0.02 0.30 16 31 H 0.08 0.18 7.71 -2.39 -0.02 0.17 16 32 H 0.18 0.46 6.45 -2.91 -0.02 0.44 16 33 H 0.21 0.61 8.06 -2.91 -0.02 0.59 16 34 H 0.07 2.02 6.07 -2.39 -0.01 2.00 16 35 H 0.10 2.37 6.46 -2.39 -0.02 2.36 16 36 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.07 1.63 4.72 -2.38 -0.01 1.62 16 38 H 0.06 1.73 5.47 -2.39 -0.01 1.71 16 39 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.06 1.71 8.14 -2.39 -0.02 1.70 16 41 H 0.04 1.42 5.38 -2.39 -0.01 1.41 16 42 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 43 H 0.04 1.62 7.86 -2.38 -0.02 1.61 16 44 H 0.37 20.87 7.80 -92.71 -0.72 20.14 16 45 H 0.25 15.15 8.31 -92.71 -0.77 14.38 16 46 H 0.06 2.57 6.78 -2.38 -0.02 2.55 16 47 H 0.04 2.05 8.08 -2.39 -0.02 2.03 16 48 H 0.13 3.79 7.64 -2.91 -0.02 3.76 16 Total: -1.00 -75.57 364.21 4.19 -71.37 By element: Atomic # 1 Polarization: 31.56 SS G_CDS: 0.28 Total: 31.83 kcal Atomic # 6 Polarization: 3.60 SS G_CDS: 6.36 Total: 9.96 kcal Atomic # 7 Polarization: -126.55 SS G_CDS: -3.46 Total: -130.01 kcal Atomic # 8 Polarization: -30.47 SS G_CDS: -1.01 Total: -31.48 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 2.03 Total: 48.33 kcal Total: -75.57 4.19 -71.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088358077.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.784 kcal (2) G-P(sol) polarization free energy of solvation -75.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds