Wall clock time and date at job start Tue Mar 31 2020 17:30:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35664 * 117.00063 * 2 1 4 4 C 1.39284 * 119.61448 * 185.36660 * 3 2 1 5 5 C 1.38337 * 119.30458 * 180.24973 * 4 3 2 6 6 C 1.38782 * 118.55713 * 359.51178 * 5 4 3 7 7 C 1.39133 * 119.18570 * 0.51021 * 6 5 4 8 8 C 1.48155 * 119.68588 * 179.75401 * 7 6 5 9 9 O 1.21515 * 119.99953 * 8.09551 * 8 7 6 10 10 N 1.34779 * 119.99904 * 188.09942 * 8 7 6 11 11 C 1.46955 * 120.34938 * 0.20523 * 10 8 7 12 12 C 1.52344 * 109.08919 * 68.38417 * 11 10 8 13 13 C 1.53800 * 109.16375 * 72.69728 * 12 11 10 14 14 C 1.52444 * 109.42107 * 282.13160 * 13 12 11 15 15 C 1.53961 * 110.73329 * 113.73017 * 14 13 12 16 16 C 1.52880 * 109.71657 * 315.64578 * 15 14 13 17 17 H 1.08996 * 109.48117 * 47.10399 * 16 15 14 18 18 N 1.46499 * 109.47891 * 167.12339 * 16 15 14 19 19 C 1.36937 * 119.99970 * 204.99952 * 18 16 15 20 20 H 1.07994 * 120.00045 * 359.97438 * 19 18 16 21 21 C 1.38810 * 120.00019 * 180.02562 * 19 18 16 22 22 N 1.31619 * 120.00429 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 119.99901 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.46940 * 59.99933 * 23 21 19 25 25 H 1.48506 * 109.46789 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47059 * 299.99896 * 23 21 19 27 27 C 1.45336 * 120.35338 * 179.97438 * 10 8 7 28 28 N 1.31896 * 119.61624 * 5.38825 * 3 2 1 29 29 H 1.08998 * 109.47649 * 170.38577 * 1 2 3 30 30 H 1.08998 * 109.47490 * 290.38914 * 1 2 3 31 31 H 1.09001 * 109.47219 * 50.38802 * 1 2 3 32 32 H 1.07997 * 120.34976 * 359.97438 * 4 3 2 33 33 H 1.07996 * 120.72124 * 179.75305 * 5 4 3 34 34 H 1.07998 * 120.40408 * 180.21655 * 6 5 4 35 35 H 1.09010 * 109.53275 * 188.25882 * 11 10 8 36 36 H 1.09001 * 109.53933 * 308.41898 * 11 10 8 37 37 H 1.08997 * 109.52258 * 192.60675 * 12 11 10 38 38 H 1.08995 * 109.51686 * 312.72776 * 12 11 10 39 39 H 1.09006 * 109.47652 * 42.11557 * 13 12 11 40 40 H 1.08995 * 109.47689 * 162.14420 * 13 12 11 41 41 H 1.09006 * 109.22234 * 234.05605 * 14 13 12 42 42 H 1.09000 * 109.22463 * 353.44480 * 14 13 12 43 43 H 1.09004 * 109.43141 * 75.72514 * 15 14 13 44 44 H 1.09002 * 109.42916 * 195.56757 * 15 14 13 45 45 H 0.97002 * 120.00391 * 25.00323 * 18 16 15 46 46 H 0.96998 * 120.00797 * 180.02562 * 22 21 19 47 47 H 1.09001 * 109.67872 * 343.07442 * 27 10 8 48 48 H 1.09004 * 109.67296 * 103.61670 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2088 0.0000 4 6 3.4316 1.2747 -0.1133 5 6 4.0534 2.5104 -0.1073 6 6 3.2667 3.6485 0.0018 7 6 1.8865 3.5112 0.1119 8 6 1.0366 4.7185 0.2345 9 8 1.5245 5.8221 0.0914 10 7 -0.2778 4.5927 0.5048 11 6 -0.8750 3.2619 0.6838 12 6 -0.3403 2.6448 1.9699 13 6 -0.9744 3.3600 3.1748 14 6 -0.2826 4.7013 3.3898 15 6 -1.2530 5.8651 3.1171 16 6 -2.0407 5.5904 1.8360 17 1 -2.4208 4.5690 1.8549 18 7 -3.1628 6.5275 1.7420 19 6 -4.2746 6.1938 1.0155 20 1 -4.3240 5.2400 0.5114 21 6 -5.3376 7.0820 0.9260 22 7 -5.2773 8.2447 1.5399 23 14 -6.8539 6.6270 -0.0657 24 1 -7.4622 5.3949 0.4973 25 1 -7.8378 7.7376 -0.0030 26 1 -6.4671 6.3868 -1.4792 27 6 -1.1187 5.7718 0.6272 28 7 1.3237 2.3078 0.1077 29 1 -0.3634 -1.0132 -0.1716 30 1 -0.3634 0.3580 0.9632 31 1 -0.3634 0.6552 -0.7917 32 1 4.0156 0.3704 -0.2003 33 1 5.1274 2.5880 -0.1898 34 1 3.7206 4.6284 0.0059 35 1 -1.9593 3.3545 0.7474 36 1 -0.6124 2.6276 -0.1628 37 1 -0.5956 1.5856 1.9993 38 1 0.7430 2.7594 2.0059 39 1 -2.0348 3.5246 2.9830 40 1 -0.8575 2.7437 4.0661 41 1 0.0705 4.7621 4.4193 42 1 0.5686 4.7786 2.7134 43 1 -1.9446 5.9642 3.9538 44 1 -0.6874 6.7899 3.0038 45 1 -3.1183 7.3844 2.1944 46 1 -6.0202 8.8652 1.4777 47 1 -0.4949 6.6540 0.7711 48 1 -1.7194 5.8894 -0.2747 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088408123.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:30:07 Heat of formation + Delta-G solvation = 13.543764 kcal Electronic energy + Delta-G solvation = -30726.291546 eV Core-core repulsion = 26783.569687 eV Total energy + Delta-G solvation = -3942.721859 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.36924 -39.80822 -38.19786 -37.35346 -34.98288 -33.82538 -32.92897 -32.05378 -30.98395 -29.92220 -27.92657 -26.96911 -26.21264 -24.76370 -23.50958 -23.08803 -22.47008 -21.43656 -20.21581 -18.83264 -18.20462 -17.42493 -17.20478 -16.35838 -16.25371 -16.10012 -16.00379 -15.60946 -14.74794 -14.42690 -14.32827 -14.27026 -14.04206 -13.79898 -13.53094 -13.27208 -13.05331 -12.79710 -12.50852 -12.49443 -12.27625 -11.95497 -11.56753 -11.44905 -11.31536 -11.25629 -10.87234 -10.82053 -10.68853 -10.42024 -10.26137 -10.22527 -10.14325 -9.98885 -9.71310 -9.59815 -9.42407 -8.94780 -8.80079 -8.14677 -6.99687 -5.79532 -3.09248 0.48652 1.01228 2.77239 2.80678 3.15939 3.41957 3.46468 3.47531 3.69731 3.90901 4.52276 4.56719 4.71280 4.75113 4.92198 4.98957 5.01939 5.06800 5.15073 5.19515 5.21745 5.40704 5.45615 5.50561 5.61192 5.65968 5.69680 5.79160 5.85685 5.91451 5.98613 6.02245 6.05459 6.15274 6.22104 6.22397 6.34635 6.39379 6.51019 6.60411 6.68076 6.81097 6.82644 6.94504 7.10202 7.42749 7.65120 7.67424 8.32456 8.38823 9.49686 10.06378 10.41212 11.42657 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.016259 B = 0.003545 C = 0.003347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.701613 B = 7897.397390 C = 8364.192178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.306 6.306 3 C 0.311 3.689 4 C -0.171 4.171 5 C -0.050 4.050 6 C -0.151 4.151 7 C 0.125 3.875 8 C 0.560 3.440 9 O -0.538 6.538 10 N -0.572 5.572 11 C 0.110 3.890 12 C -0.122 4.122 13 C -0.132 4.132 14 C -0.112 4.112 15 C -0.123 4.123 16 C 0.159 3.841 17 H 0.067 0.933 18 N -0.719 5.719 19 C -0.244 4.244 20 H 0.070 0.930 21 C -0.009 4.009 22 N -0.930 5.930 23 Si 0.906 3.094 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.286 1.286 27 C 0.086 3.914 28 N -0.498 5.498 29 H 0.095 0.905 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.143 0.857 33 H 0.147 0.853 34 H 0.149 0.851 35 H 0.083 0.917 36 H 0.090 0.910 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.078 0.922 40 H 0.053 0.947 41 H 0.050 0.950 42 H 0.055 0.945 43 H 0.064 0.936 44 H 0.057 0.943 45 H 0.385 0.615 46 H 0.256 0.744 47 H 0.081 0.919 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.231 -17.151 -0.748 24.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.213 6.213 3 C 0.130 3.870 4 C -0.192 4.192 5 C -0.075 4.075 6 C -0.172 4.172 7 C -0.011 4.011 8 C 0.345 3.655 9 O -0.415 6.415 10 N -0.303 5.303 11 C -0.012 4.012 12 C -0.160 4.160 13 C -0.169 4.169 14 C -0.150 4.150 15 C -0.161 4.161 16 C 0.048 3.952 17 H 0.084 0.916 18 N -0.359 5.359 19 C -0.375 4.375 20 H 0.087 0.913 21 C -0.206 4.206 22 N -0.578 5.578 23 Si 0.737 3.263 24 H -0.212 1.212 25 H -0.217 1.217 26 H -0.212 1.212 27 C -0.039 4.039 28 N -0.225 5.225 29 H 0.113 0.887 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.161 0.839 33 H 0.165 0.835 34 H 0.167 0.833 35 H 0.101 0.899 36 H 0.108 0.892 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.097 0.903 40 H 0.072 0.928 41 H 0.069 0.931 42 H 0.074 0.926 43 H 0.083 0.917 44 H 0.076 0.924 45 H 0.219 0.781 46 H 0.066 0.934 47 H 0.099 0.901 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 16.456 -16.912 -0.845 23.612 hybrid contribution -0.216 0.204 -0.491 0.574 sum 16.240 -16.709 -1.337 23.339 Atomic orbital electron populations 1.23232 0.77011 1.03271 1.03300 1.86238 1.23074 1.24071 1.87920 1.19934 0.89496 0.84890 0.92714 1.21267 0.92254 0.99718 1.05974 1.21420 1.00751 0.90865 0.94469 1.21989 0.93182 1.00802 1.01216 1.20939 0.92262 0.90460 0.97478 1.17837 0.82242 0.87124 0.78263 1.90779 1.73229 1.25818 1.51691 1.47772 1.07338 1.08664 1.66476 1.21927 0.98103 0.82670 0.98542 1.22232 1.00606 0.98755 0.94446 1.21931 1.01378 0.96093 0.97530 1.21625 0.98565 0.94585 1.00239 1.22022 0.97817 0.97533 0.98778 1.20842 0.87823 0.95637 0.90904 0.91553 1.42409 1.14011 1.18753 1.60757 1.19158 0.93595 1.00760 1.23962 0.91253 1.24744 0.98622 0.96436 1.00784 1.69649 1.32401 1.08542 1.47160 0.86296 0.82937 0.77162 0.79932 1.21236 1.21686 1.21244 1.22655 0.92867 0.86799 1.01575 1.67956 1.39187 0.98254 1.17146 0.88668 0.91275 0.91809 0.83903 0.83527 0.83308 0.89902 0.89168 0.91587 0.91662 0.90323 0.92835 0.93135 0.92578 0.91715 0.92433 0.78094 0.93369 0.90074 0.91141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.08 101.05 1.02 1.23 16 2 O -0.31 -3.01 10.48 -18.69 -0.20 -3.21 16 3 C 0.31 3.28 7.48 -17.14 -0.13 3.15 16 4 C -0.17 -1.46 10.05 -39.16 -0.39 -1.86 16 5 C -0.05 -0.40 10.16 -39.34 -0.40 -0.80 16 6 C -0.15 -1.66 9.62 -39.05 -0.38 -2.03 16 7 C 0.13 1.66 5.67 -83.02 -0.47 1.19 16 8 C 0.56 9.15 6.22 -12.19 -0.08 9.07 16 9 O -0.54 -10.31 15.78 5.35 0.08 -10.23 16 10 N -0.57 -9.19 1.69 -175.56 -0.30 -9.48 16 11 C 0.11 1.49 4.88 -4.13 -0.02 1.47 16 12 C -0.12 -1.48 4.16 -26.65 -0.11 -1.59 16 13 C -0.13 -1.75 5.49 -26.60 -0.15 -1.89 16 14 C -0.11 -1.65 5.40 -26.51 -0.14 -1.79 16 15 C -0.12 -2.13 5.21 -26.29 -0.14 -2.27 16 16 C 0.16 3.07 2.29 -67.94 -0.16 2.91 16 17 H 0.07 1.26 3.29 -51.93 -0.17 1.09 16 18 N -0.72 -17.55 5.12 -53.44 -0.27 -17.82 16 19 C -0.24 -6.53 9.88 -15.06 -0.15 -6.68 16 20 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 21 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 22 N -0.93 -27.71 13.06 55.49 0.72 -26.99 16 23 Si 0.91 21.98 29.55 -169.99 -5.02 16.96 16 24 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 25 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 26 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 27 C 0.09 1.63 5.58 -4.61 -0.03 1.60 16 28 N -0.50 -5.92 3.09 -9.87 -0.03 -5.95 16 29 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.55 5.06 -51.93 -0.26 0.29 16 31 H 0.06 0.54 6.93 -51.93 -0.36 0.18 16 32 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 33 H 0.15 0.70 8.06 -52.49 -0.42 0.28 16 34 H 0.15 1.61 7.65 -52.49 -0.40 1.20 16 35 H 0.08 1.19 6.07 -51.92 -0.32 0.88 16 36 H 0.09 1.14 4.77 -51.93 -0.25 0.89 16 37 H 0.07 0.68 5.41 -51.93 -0.28 0.40 16 38 H 0.06 0.85 4.96 -51.93 -0.26 0.59 16 39 H 0.08 1.15 5.47 -51.93 -0.28 0.87 16 40 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 42 H 0.06 0.88 5.38 -51.93 -0.28 0.60 16 43 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 44 H 0.06 1.03 7.86 -51.93 -0.41 0.62 16 45 H 0.39 10.15 7.80 -40.82 -0.32 9.83 16 46 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 47 H 0.08 1.66 6.77 -51.93 -0.35 1.31 16 48 H 0.07 1.48 8.08 -51.93 -0.42 1.06 16 LS Contribution 358.11 15.07 5.40 5.40 Total: -1.00 -31.34 358.11 -7.86 -39.20 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: -6.44 Total: 10.77 kcal Atomic # 6 Polarization: 3.16 SS G_CDS: -1.81 Total: 1.36 kcal Atomic # 7 Polarization: -60.37 SS G_CDS: 0.12 Total: -60.24 kcal Atomic # 8 Polarization: -13.32 SS G_CDS: -0.11 Total: -13.44 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.34 -7.86 -39.20 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088408123.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.744 kcal (2) G-P(sol) polarization free energy of solvation -31.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.201 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds