Wall clock time and date at job start Tue Mar 31 2020 17:30:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35664 * 117.00063 * 2 1 4 4 C 1.39284 * 119.61448 * 185.36660 * 3 2 1 5 5 C 1.38337 * 119.30458 * 180.24973 * 4 3 2 6 6 C 1.38782 * 118.55713 * 359.51178 * 5 4 3 7 7 C 1.39133 * 119.18570 * 0.51021 * 6 5 4 8 8 C 1.48155 * 119.68588 * 179.75401 * 7 6 5 9 9 O 1.21515 * 119.99953 * 8.09551 * 8 7 6 10 10 N 1.34779 * 119.99904 * 188.09942 * 8 7 6 11 11 C 1.46955 * 120.34938 * 0.20523 * 10 8 7 12 12 C 1.52344 * 109.08919 * 68.38417 * 11 10 8 13 13 C 1.53800 * 109.16375 * 72.69728 * 12 11 10 14 14 C 1.52444 * 109.42107 * 282.13160 * 13 12 11 15 15 C 1.53961 * 110.73329 * 113.73017 * 14 13 12 16 16 C 1.52880 * 109.71657 * 315.64578 * 15 14 13 17 17 H 1.08996 * 109.48117 * 47.10399 * 16 15 14 18 18 N 1.46499 * 109.47891 * 167.12339 * 16 15 14 19 19 C 1.36937 * 119.99970 * 204.99952 * 18 16 15 20 20 H 1.07994 * 120.00045 * 359.97438 * 19 18 16 21 21 C 1.38810 * 120.00019 * 180.02562 * 19 18 16 22 22 N 1.31619 * 120.00429 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 119.99901 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.46940 * 59.99933 * 23 21 19 25 25 H 1.48506 * 109.46789 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47059 * 299.99896 * 23 21 19 27 27 C 1.45336 * 120.35338 * 179.97438 * 10 8 7 28 28 N 1.31896 * 119.61624 * 5.38825 * 3 2 1 29 29 H 1.08998 * 109.47649 * 170.38577 * 1 2 3 30 30 H 1.08998 * 109.47490 * 290.38914 * 1 2 3 31 31 H 1.09001 * 109.47219 * 50.38802 * 1 2 3 32 32 H 1.07997 * 120.34976 * 359.97438 * 4 3 2 33 33 H 1.07996 * 120.72124 * 179.75305 * 5 4 3 34 34 H 1.07998 * 120.40408 * 180.21655 * 6 5 4 35 35 H 1.09010 * 109.53275 * 188.25882 * 11 10 8 36 36 H 1.09001 * 109.53933 * 308.41898 * 11 10 8 37 37 H 1.08997 * 109.52258 * 192.60675 * 12 11 10 38 38 H 1.08995 * 109.51686 * 312.72776 * 12 11 10 39 39 H 1.09006 * 109.47652 * 42.11557 * 13 12 11 40 40 H 1.08995 * 109.47689 * 162.14420 * 13 12 11 41 41 H 1.09006 * 109.22234 * 234.05605 * 14 13 12 42 42 H 1.09000 * 109.22463 * 353.44480 * 14 13 12 43 43 H 1.09004 * 109.43141 * 75.72514 * 15 14 13 44 44 H 1.09002 * 109.42916 * 195.56757 * 15 14 13 45 45 H 0.97002 * 120.00391 * 25.00323 * 18 16 15 46 46 H 0.96998 * 120.00797 * 180.02562 * 22 21 19 47 47 H 1.09001 * 109.67872 * 343.07442 * 27 10 8 48 48 H 1.09004 * 109.67296 * 103.61670 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2088 0.0000 4 6 3.4316 1.2747 -0.1133 5 6 4.0534 2.5104 -0.1073 6 6 3.2667 3.6485 0.0018 7 6 1.8865 3.5112 0.1119 8 6 1.0366 4.7185 0.2345 9 8 1.5245 5.8221 0.0914 10 7 -0.2778 4.5927 0.5048 11 6 -0.8750 3.2619 0.6838 12 6 -0.3403 2.6448 1.9699 13 6 -0.9744 3.3600 3.1748 14 6 -0.2826 4.7013 3.3898 15 6 -1.2530 5.8651 3.1171 16 6 -2.0407 5.5904 1.8360 17 1 -2.4208 4.5690 1.8549 18 7 -3.1628 6.5275 1.7420 19 6 -4.2746 6.1938 1.0155 20 1 -4.3240 5.2400 0.5114 21 6 -5.3376 7.0820 0.9260 22 7 -5.2773 8.2447 1.5399 23 14 -6.8539 6.6270 -0.0657 24 1 -7.4622 5.3949 0.4973 25 1 -7.8378 7.7376 -0.0030 26 1 -6.4671 6.3868 -1.4792 27 6 -1.1187 5.7718 0.6272 28 7 1.3237 2.3078 0.1077 29 1 -0.3634 -1.0132 -0.1716 30 1 -0.3634 0.3580 0.9632 31 1 -0.3634 0.6552 -0.7917 32 1 4.0156 0.3704 -0.2003 33 1 5.1274 2.5880 -0.1898 34 1 3.7206 4.6284 0.0059 35 1 -1.9593 3.3545 0.7474 36 1 -0.6124 2.6276 -0.1628 37 1 -0.5956 1.5856 1.9993 38 1 0.7430 2.7594 2.0059 39 1 -2.0348 3.5246 2.9830 40 1 -0.8575 2.7437 4.0661 41 1 0.0705 4.7621 4.4193 42 1 0.5686 4.7786 2.7134 43 1 -1.9446 5.9642 3.9538 44 1 -0.6874 6.7899 3.0038 45 1 -3.1183 7.3844 2.1944 46 1 -6.0202 8.8652 1.4777 47 1 -0.4949 6.6540 0.7711 48 1 -1.7194 5.8894 -0.2747 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088408123.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:30:06 Heat of formation + Delta-G solvation = -5.833025 kcal Electronic energy + Delta-G solvation = -30727.131787 eV Core-core repulsion = 26783.569687 eV Total energy + Delta-G solvation = -3943.562100 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.35134 -40.89655 -39.25191 -38.44118 -36.57490 -35.17016 -34.24028 -33.33971 -31.88450 -31.53536 -29.09401 -27.98154 -27.55714 -26.09814 -25.01321 -23.88444 -23.67486 -22.82322 -21.37297 -20.16658 -19.22397 -19.03620 -18.52046 -17.56359 -17.15567 -17.00485 -16.96949 -16.79351 -16.38450 -15.77162 -15.60082 -15.29538 -15.12847 -15.09344 -14.94064 -14.42917 -14.22833 -14.17774 -13.82420 -13.65545 -13.17188 -13.07655 -12.98961 -12.80124 -12.67933 -12.58156 -12.33517 -12.24095 -12.15551 -11.91626 -11.78692 -11.57036 -11.45359 -11.35559 -11.16936 -10.92190 -10.67893 -10.40313 -9.71071 -9.44579 -8.99808 -7.93806 -5.23824 -0.38046 0.27719 1.47573 1.50495 1.56320 1.67875 1.90619 2.13710 2.56710 2.79306 2.94775 3.39218 3.63425 3.75589 3.86230 3.96678 4.00973 4.05612 4.10813 4.21552 4.23751 4.27995 4.37221 4.43231 4.49501 4.50149 4.56273 4.60691 4.69808 4.80399 4.86053 4.88835 4.94057 4.98578 5.01767 5.15076 5.22373 5.24680 5.29392 5.35955 5.38531 5.39240 5.45379 5.54356 5.68755 6.17229 6.26579 6.38285 6.61715 7.06045 7.33175 8.06085 8.30674 9.29436 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.016259 B = 0.003545 C = 0.003347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.701613 B = 7897.397390 C = 8364.192178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.309 6.309 3 C 0.298 3.702 4 C -0.156 4.156 5 C -0.036 4.036 6 C -0.152 4.152 7 C 0.099 3.901 8 C 0.557 3.443 9 O -0.577 6.577 10 N -0.574 5.574 11 C 0.111 3.889 12 C -0.111 4.111 13 C -0.129 4.129 14 C -0.104 4.104 15 C -0.117 4.117 16 C 0.162 3.838 17 H 0.078 0.922 18 N -0.732 5.732 19 C -0.240 4.240 20 H 0.079 0.921 21 C -0.073 4.073 22 N -0.970 5.970 23 Si 0.971 3.029 24 H -0.273 1.273 25 H -0.298 1.298 26 H -0.280 1.280 27 C 0.103 3.897 28 N -0.506 5.506 29 H 0.119 0.881 30 H 0.068 0.932 31 H 0.055 0.945 32 H 0.174 0.826 33 H 0.187 0.813 34 H 0.145 0.855 35 H 0.072 0.928 36 H 0.103 0.897 37 H 0.091 0.909 38 H 0.062 0.938 39 H 0.064 0.936 40 H 0.076 0.924 41 H 0.066 0.934 42 H 0.046 0.954 43 H 0.058 0.942 44 H 0.044 0.956 45 H 0.372 0.628 46 H 0.251 0.749 47 H 0.059 0.941 48 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.949 -20.939 -0.883 28.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.215 6.215 3 C 0.117 3.883 4 C -0.177 4.177 5 C -0.061 4.061 6 C -0.174 4.174 7 C -0.036 4.036 8 C 0.345 3.655 9 O -0.457 6.457 10 N -0.303 5.303 11 C -0.010 4.010 12 C -0.149 4.149 13 C -0.166 4.166 14 C -0.142 4.142 15 C -0.155 4.155 16 C 0.053 3.947 17 H 0.096 0.904 18 N -0.371 5.371 19 C -0.371 4.371 20 H 0.097 0.903 21 C -0.265 4.265 22 N -0.620 5.620 23 Si 0.800 3.200 24 H -0.199 1.199 25 H -0.225 1.225 26 H -0.206 1.206 27 C -0.023 4.023 28 N -0.233 5.233 29 H 0.137 0.863 30 H 0.087 0.913 31 H 0.074 0.926 32 H 0.192 0.808 33 H 0.204 0.796 34 H 0.162 0.838 35 H 0.091 0.909 36 H 0.121 0.879 37 H 0.109 0.891 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.094 0.906 41 H 0.085 0.915 42 H 0.064 0.936 43 H 0.077 0.923 44 H 0.063 0.937 45 H 0.203 0.797 46 H 0.059 0.941 47 H 0.078 0.922 48 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 18.199 -20.773 -0.985 27.635 hybrid contribution -0.604 1.270 -0.470 1.483 sum 17.596 -19.503 -1.454 26.307 Atomic orbital electron populations 1.23373 0.76216 1.04678 1.02928 1.86255 1.23909 1.23507 1.87872 1.20260 0.90467 0.84624 0.92989 1.21705 0.91590 1.01028 1.03342 1.21822 1.02359 0.89401 0.92520 1.22119 0.92510 1.01957 1.00849 1.20435 0.92494 0.89674 1.01006 1.18370 0.82180 0.87962 0.76980 1.90742 1.73932 1.27715 1.53355 1.47750 1.07356 1.08529 1.66679 1.22084 0.97308 0.81477 1.00143 1.22151 1.00116 0.99841 0.92771 1.21909 1.00135 0.95517 0.99080 1.21572 0.97415 0.94278 1.00934 1.21926 0.97861 0.98436 0.97281 1.20989 0.86772 0.94999 0.91951 0.90440 1.42608 1.15059 1.18982 1.60449 1.19563 0.93959 1.00746 1.22859 0.90300 1.25551 1.01767 0.96616 1.02577 1.69818 1.33068 1.09756 1.49355 0.85253 0.79272 0.76847 0.78639 1.19927 1.22486 1.20622 1.22116 0.92514 0.87672 1.00009 1.67727 1.39807 0.98133 1.17651 0.86256 0.91317 0.92623 0.80836 0.79558 0.83765 0.90950 0.87945 0.89054 0.91976 0.91797 0.90581 0.91495 0.93566 0.92317 0.93695 0.79668 0.94069 0.92224 0.93773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 10.08 113.37 1.14 1.43 16 2 O -0.31 -5.06 10.48 -89.80 -0.94 -6.00 16 3 C 0.30 5.39 7.48 84.93 0.64 6.02 16 4 C -0.16 -2.01 10.05 22.54 0.23 -1.78 16 5 C -0.04 -0.45 10.16 22.42 0.23 -0.22 16 6 C -0.15 -3.11 9.62 22.62 0.22 -2.89 16 7 C 0.10 2.54 5.67 41.84 0.24 2.78 16 8 C 0.56 18.67 6.22 86.88 0.54 19.21 16 9 O -0.58 -23.21 15.78 -3.76 -0.06 -23.26 16 10 N -0.57 -18.89 1.69 -827.65 -1.40 -20.29 16 11 C 0.11 2.95 4.88 86.08 0.42 3.37 16 12 C -0.11 -2.47 4.16 30.65 0.13 -2.35 16 13 C -0.13 -3.19 5.49 30.68 0.17 -3.02 16 14 C -0.10 -2.99 5.40 30.73 0.17 -2.82 16 15 C -0.12 -4.16 5.21 30.88 0.16 -4.00 16 16 C 0.16 6.47 2.29 44.99 0.10 6.58 16 17 H 0.08 2.97 3.29 -2.39 -0.01 2.96 16 18 N -0.73 -37.11 5.12 -322.97 -1.66 -38.77 16 19 C -0.24 -13.09 9.88 84.03 0.83 -12.26 16 20 H 0.08 4.07 7.83 -2.91 -0.02 4.05 16 21 C -0.07 -4.16 5.50 84.86 0.47 -3.69 16 22 N -0.97 -59.67 13.06 21.65 0.28 -59.38 16 23 Si 0.97 45.83 29.55 68.60 2.03 47.86 16 24 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 25 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 26 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 27 C 0.10 4.12 5.58 86.63 0.48 4.60 16 28 N -0.51 -11.09 3.09 -298.21 -0.92 -12.01 16 29 H 0.12 0.95 8.14 -2.39 -0.02 0.94 16 30 H 0.07 0.89 5.06 -2.39 -0.01 0.87 16 31 H 0.06 0.82 6.93 -2.39 -0.02 0.80 16 32 H 0.17 1.20 8.06 -2.91 -0.02 1.17 16 33 H 0.19 0.80 8.06 -2.91 -0.02 0.78 16 34 H 0.14 3.03 7.65 -2.91 -0.02 3.00 16 35 H 0.07 2.06 6.07 -2.38 -0.01 2.04 16 36 H 0.10 2.49 4.77 -2.39 -0.01 2.48 16 37 H 0.09 1.60 5.41 -2.39 -0.01 1.59 16 38 H 0.06 1.50 4.96 -2.39 -0.01 1.49 16 39 H 0.06 1.79 5.47 -2.38 -0.01 1.78 16 40 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 41 H 0.07 1.72 8.14 -2.38 -0.02 1.70 16 42 H 0.05 1.44 5.38 -2.39 -0.01 1.42 16 43 H 0.06 2.15 8.14 -2.38 -0.02 2.13 16 44 H 0.04 1.69 7.86 -2.39 -0.02 1.67 16 45 H 0.37 20.58 7.80 -92.71 -0.72 19.86 16 46 H 0.25 15.03 8.31 -92.71 -0.77 14.26 16 47 H 0.06 2.63 6.77 -2.39 -0.02 2.61 16 48 H 0.04 1.97 8.08 -2.38 -0.02 1.95 16 Total: -1.00 -70.82 358.11 3.78 -67.04 By element: Atomic # 1 Polarization: 33.55 SS G_CDS: 0.29 Total: 33.84 kcal Atomic # 6 Polarization: 4.82 SS G_CDS: 6.15 Total: 10.97 kcal Atomic # 7 Polarization: -126.75 SS G_CDS: -3.69 Total: -130.44 kcal Atomic # 8 Polarization: -28.26 SS G_CDS: -1.00 Total: -29.26 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.86 kcal Total: -70.82 3.78 -67.04 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088408123.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.205 kcal (2) G-P(sol) polarization free energy of solvation -70.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds