Wall clock time and date at job start Tue Mar 31 2020 17:39:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35657 * 116.99741 * 2 1 4 4 C 1.39344 * 120.53810 * 0.02562 * 3 2 1 5 5 C 1.38299 * 118.43487 * 179.97438 * 4 3 2 6 6 C 1.38761 * 119.44954 * 359.97438 * 5 4 3 7 7 N 1.31375 * 121.06781 * 359.72665 * 6 5 4 8 8 C 1.32862 * 121.69194 * 0.56669 * 7 6 5 9 9 C 1.47834 * 119.78269 * 179.70972 * 8 7 6 10 10 O 1.21560 * 119.99590 * 172.44463 * 9 8 7 11 11 N 1.34774 * 120.00020 * 352.44865 * 9 8 7 12 12 C 1.47138 * 120.18341 * 352.24684 * 11 9 8 13 13 C 1.53622 * 107.51355 * 107.88665 * 12 11 9 14 14 C 1.53490 * 108.46830 * 69.77812 * 13 12 11 15 15 C 1.52473 * 109.14530 * 245.78134 * 14 13 12 16 16 C 1.53119 * 109.67296 * 43.92888 * 15 14 13 17 17 C 1.53443 * 109.34699 * 77.03302 * 16 15 14 18 18 H 1.08992 * 109.63294 * 47.55385 * 17 16 15 19 19 N 1.46500 * 109.62987 * 167.95005 * 17 16 15 20 20 C 1.36933 * 119.99566 * 204.99966 * 19 17 16 21 21 H 1.07997 * 120.00280 * 359.97438 * 20 19 17 22 22 C 1.38815 * 119.99850 * 179.72652 * 20 19 17 23 23 N 1.31621 * 119.99932 * 0.27066 * 22 20 19 24 24 Si 1.86794 * 120.00104 * 180.27316 * 22 20 19 25 25 H 1.48496 * 109.47156 * 359.97438 * 24 22 20 26 26 H 1.48509 * 109.47110 * 119.99769 * 24 22 20 27 27 H 1.48500 * 109.47391 * 239.99539 * 24 22 20 28 28 C 1.46060 * 120.18463 * 172.27558 * 11 9 8 29 29 H 1.09006 * 109.47335 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47557 * 299.99634 * 1 2 3 31 31 H 1.08999 * 109.47580 * 60.00085 * 1 2 3 32 32 H 1.07992 * 120.78182 * 0.02562 * 4 3 2 33 33 H 1.08003 * 120.27833 * 179.97438 * 5 4 3 34 34 H 1.08001 * 119.47197 * 180.02562 * 6 5 4 35 35 H 1.08994 * 109.85247 * 348.37802 * 12 11 9 36 36 H 1.09002 * 109.84653 * 227.38556 * 12 11 9 37 37 H 1.09003 * 109.63789 * 310.07897 * 13 12 11 38 38 H 1.09005 * 109.63346 * 189.46779 * 13 12 11 39 39 H 1.08998 * 109.52213 * 125.88007 * 14 13 12 40 40 H 1.08997 * 109.52425 * 5.68374 * 14 13 12 41 41 H 1.08996 * 109.43497 * 283.86424 * 15 14 13 42 42 H 1.08999 * 109.43073 * 163.98803 * 15 14 13 43 43 H 1.09002 * 109.49247 * 317.07431 * 16 15 14 44 44 H 1.08993 * 109.51392 * 197.00516 * 16 15 14 45 45 H 0.96995 * 119.99838 * 24.99820 * 19 17 16 46 46 H 0.97003 * 120.00267 * 179.97438 * 23 22 20 47 47 H 1.09001 * 109.36210 * 172.82319 * 28 11 9 48 48 H 1.09000 * 109.36571 * 53.22929 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0447 1.2087 0.0000 4 6 1.2968 2.3844 0.0005 5 6 1.9694 3.5928 0.0011 6 6 3.3570 3.6013 0.0016 7 7 4.0418 2.4801 0.0069 8 6 3.4409 1.2952 0.0009 9 6 4.2531 0.0600 0.0008 10 8 3.7144 -1.0216 0.1338 11 7 5.5908 0.1331 -0.1466 12 6 6.2296 1.4167 -0.4772 13 6 6.9675 1.9030 0.7794 14 6 8.1723 0.9836 1.0221 15 6 7.9613 0.2155 2.3222 16 6 6.5208 -0.2993 2.3888 17 6 6.3777 -1.5283 1.4814 18 1 7.1992 -2.2196 1.6688 19 7 5.1017 -2.1949 1.7532 20 6 4.9553 -3.5293 1.4829 21 1 5.7801 -4.0902 1.0689 22 6 3.7481 -4.1622 1.7458 23 7 2.7426 -3.4786 2.2498 24 14 3.5506 -5.9842 1.3842 25 1 4.8185 -6.5181 0.8251 26 1 3.2203 -6.7051 2.6398 27 1 2.4558 -6.1777 0.3997 28 6 6.4144 -1.0616 0.0204 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 0.2173 2.3527 0.0014 33 1 1.4193 4.5223 0.0011 34 1 3.8826 4.5448 0.0024 35 1 5.4710 2.1441 -0.7658 36 1 6.9393 1.2776 -1.2927 37 1 6.2964 1.8618 1.6373 38 1 7.3120 2.9262 0.6288 39 1 9.0793 1.5836 1.0965 40 1 8.2665 0.2804 0.1946 41 1 8.1500 0.8760 3.1684 42 1 8.6502 -0.6283 2.3607 43 1 5.8393 0.4823 2.0526 44 1 6.2798 -0.5751 3.4153 45 1 4.3608 -1.6911 2.1247 46 1 1.8989 -3.9208 2.4332 47 1 7.4427 -0.8338 -0.2604 48 1 6.0339 -1.8556 -0.6222 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088417187.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:39:30 Heat of formation + Delta-G solvation = 36.967551 kcal Electronic energy + Delta-G solvation = -31481.744088 eV Core-core repulsion = 27540.037960 eV Total energy + Delta-G solvation = -3941.706128 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -40.87405 -39.38159 -37.97479 -36.83774 -34.50418 -33.40552 -32.26906 -31.59423 -30.62152 -29.17364 -27.42928 -26.75870 -26.28409 -24.37906 -23.19693 -22.77457 -22.41963 -20.63454 -19.85535 -18.56122 -17.78929 -17.00600 -16.77473 -16.61070 -15.76290 -15.44339 -15.16453 -14.88770 -14.82636 -14.32243 -14.02089 -13.96344 -13.78798 -13.54387 -13.01211 -12.91222 -12.86119 -12.70513 -12.38070 -11.88178 -11.62478 -11.48315 -11.46527 -11.31226 -11.19186 -10.72650 -10.67847 -10.58277 -10.43876 -10.12359 -9.97205 -9.83047 -9.78504 -9.53939 -9.22681 -9.21271 -8.65421 -8.55230 -8.27181 -7.72046 -6.43971 -5.37515 -2.61845 0.84473 1.27096 3.32849 3.36335 3.61167 3.66196 3.67945 3.70202 4.23020 4.42789 4.60989 4.73284 4.86538 4.97022 5.14617 5.17729 5.22640 5.28971 5.29245 5.39475 5.51725 5.70516 5.71302 5.72071 5.80854 5.88263 5.94155 5.96181 5.97895 6.05567 6.17360 6.23344 6.27697 6.38982 6.40245 6.55935 6.59308 6.59902 6.77519 6.88327 6.94639 7.10585 7.14941 7.40323 7.55166 7.82457 7.98598 8.27696 8.77601 9.19569 9.90528 10.53753 10.87856 11.84468 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.009614 B = 0.006347 C = 0.004108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2911.777335 B = 4410.617369 C = 6814.642855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.254 6.254 3 C 0.139 3.861 4 C -0.180 4.180 5 C -0.117 4.117 6 C 0.039 3.961 7 N -0.411 5.411 8 C 0.056 3.944 9 C 0.537 3.463 10 O -0.425 6.425 11 N -0.595 5.595 12 C 0.082 3.918 13 C -0.131 4.131 14 C -0.131 4.131 15 C -0.112 4.112 16 C -0.136 4.136 17 C 0.165 3.835 18 H 0.051 0.949 19 N -0.703 5.703 20 C -0.221 4.221 21 H 0.062 0.938 22 C -0.008 4.008 23 N -0.917 5.917 24 Si 0.893 3.107 25 H -0.284 1.284 26 H -0.298 1.298 27 H -0.297 1.297 28 C 0.093 3.907 29 H 0.106 0.894 30 H 0.054 0.946 31 H 0.049 0.951 32 H 0.141 0.859 33 H 0.136 0.864 34 H 0.159 0.841 35 H 0.134 0.866 36 H 0.049 0.951 37 H 0.077 0.923 38 H 0.056 0.944 39 H 0.049 0.951 40 H 0.071 0.929 41 H 0.050 0.950 42 H 0.057 0.943 43 H 0.076 0.924 44 H 0.054 0.946 45 H 0.386 0.614 46 H 0.245 0.755 47 H 0.067 0.933 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.352 18.834 -5.638 19.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.163 6.163 3 C 0.087 3.913 4 C -0.207 4.207 5 C -0.137 4.137 6 C -0.120 4.120 7 N -0.123 5.123 8 C -0.084 4.084 9 C 0.320 3.680 10 O -0.291 6.291 11 N -0.330 5.330 12 C -0.041 4.041 13 C -0.169 4.169 14 C -0.168 4.168 15 C -0.150 4.150 16 C -0.174 4.174 17 C 0.053 3.947 18 H 0.068 0.932 19 N -0.344 5.344 20 C -0.353 4.353 21 H 0.080 0.920 22 C -0.204 4.204 23 N -0.565 5.565 24 Si 0.726 3.274 25 H -0.210 1.210 26 H -0.225 1.225 27 H -0.225 1.225 28 C -0.033 4.033 29 H 0.125 0.875 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.159 0.841 33 H 0.154 0.846 34 H 0.177 0.823 35 H 0.150 0.850 36 H 0.067 0.933 37 H 0.096 0.904 38 H 0.075 0.925 39 H 0.068 0.932 40 H 0.089 0.911 41 H 0.069 0.931 42 H 0.076 0.924 43 H 0.094 0.906 44 H 0.073 0.927 45 H 0.221 0.779 46 H 0.055 0.945 47 H 0.085 0.915 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.993 17.744 -5.582 18.708 hybrid contribution -1.547 -0.531 -0.114 1.640 sum 0.446 17.213 -5.695 18.136 Atomic orbital electron populations 1.23169 0.78908 1.04833 1.00289 1.86605 1.20527 1.23646 1.85506 1.20151 0.92597 0.85974 0.92572 1.21734 1.00932 0.92005 1.06003 1.22057 0.95770 0.98063 0.97793 1.22773 0.91466 0.96834 1.00920 1.67888 1.37491 0.97580 1.09371 1.21286 0.88994 0.93261 1.04826 1.17718 0.82344 0.87291 0.80667 1.91227 1.69782 1.25767 1.42334 1.47613 1.05332 1.09468 1.70635 1.22857 0.98726 0.86956 0.95590 1.22272 0.97122 0.97709 0.99813 1.21958 0.97499 0.98587 0.98747 1.21444 0.97564 0.99105 0.96895 1.22225 0.95967 0.99193 1.00024 1.20810 0.91071 0.91774 0.91065 0.93160 1.42351 1.09337 1.07399 1.75285 1.19093 0.96631 0.85452 1.34153 0.92049 1.24568 0.96369 0.96728 1.02685 1.69717 1.02661 1.33818 1.50338 0.86321 0.77129 0.86909 0.77063 1.21008 1.22540 1.22452 1.22640 0.92669 0.86676 1.01271 0.87521 0.92763 0.93206 0.84081 0.84644 0.82349 0.84988 0.93279 0.90428 0.92519 0.93197 0.91095 0.93084 0.92450 0.90608 0.92713 0.77903 0.94525 0.91547 0.91652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.83 101.05 0.99 1.31 16 2 O -0.25 -4.86 8.59 -40.50 -0.35 -5.21 16 3 C 0.14 2.31 6.70 -38.56 -0.26 2.05 16 4 C -0.18 -2.17 9.13 -39.15 -0.36 -2.53 16 5 C -0.12 -1.14 10.10 -39.37 -0.40 -1.54 16 6 C 0.04 0.42 11.17 -17.55 -0.20 0.22 16 7 N -0.41 -5.78 5.94 -9.71 -0.06 -5.84 16 8 C 0.06 0.98 6.60 -82.88 -0.55 0.43 16 9 C 0.54 11.26 6.64 -12.34 -0.08 11.18 16 10 O -0.43 -11.06 11.92 -16.51 -0.20 -11.26 16 11 N -0.59 -10.77 1.72 -174.00 -0.30 -11.07 16 12 C 0.08 1.16 5.32 -3.37 -0.02 1.14 16 13 C -0.13 -1.70 5.45 -26.15 -0.14 -1.85 16 14 C -0.13 -1.68 5.48 -26.75 -0.15 -1.83 16 15 C -0.11 -1.63 5.67 -26.94 -0.15 -1.78 16 16 C -0.14 -2.50 4.92 -26.44 -0.13 -2.63 16 17 C 0.16 3.50 2.68 -67.49 -0.18 3.32 16 18 H 0.05 1.08 7.83 -51.93 -0.41 0.68 16 19 N -0.70 -18.83 3.08 -53.00 -0.16 -18.99 16 20 C -0.22 -6.54 9.89 -15.06 -0.15 -6.69 16 21 H 0.06 1.78 7.83 -52.49 -0.41 1.36 16 22 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 23 N -0.92 -29.26 13.06 55.49 0.72 -28.53 16 24 Si 0.89 23.90 29.55 -169.99 -5.02 18.88 16 25 H -0.28 -7.40 7.11 56.52 0.40 -6.99 16 26 H -0.30 -7.97 7.11 56.52 0.40 -7.57 16 27 H -0.30 -8.06 7.11 56.52 0.40 -7.66 16 28 C 0.09 1.79 4.91 -4.06 -0.02 1.77 16 29 H 0.11 1.45 8.14 -51.93 -0.42 1.03 16 30 H 0.05 0.63 7.70 -51.93 -0.40 0.23 16 31 H 0.05 0.52 7.70 -51.93 -0.40 0.12 16 32 H 0.14 1.32 6.46 -52.49 -0.34 0.98 16 33 H 0.14 0.84 8.06 -52.48 -0.42 0.42 16 34 H 0.16 1.14 8.06 -52.49 -0.42 0.71 16 35 H 0.13 1.84 4.22 -80.37 -0.34 1.50 16 36 H 0.05 0.64 7.97 -51.93 -0.41 0.23 16 37 H 0.08 1.17 5.45 -51.93 -0.28 0.89 16 38 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.07 0.95 4.49 -51.93 -0.23 0.71 16 41 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 42 H 0.06 0.82 7.85 -51.93 -0.41 0.41 16 43 H 0.08 1.45 3.68 -51.93 -0.19 1.26 16 44 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 45 H 0.39 11.38 6.59 -40.82 -0.27 11.11 16 46 H 0.24 7.60 8.31 -40.82 -0.34 7.26 16 47 H 0.07 1.08 5.07 -51.93 -0.26 0.82 16 48 H 0.07 1.48 8.03 -51.93 -0.42 1.06 16 LS Contribution 361.18 15.07 5.44 5.44 Total: -1.00 -35.83 361.18 -8.67 -44.50 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: -6.87 Total: 9.82 kcal Atomic # 6 Polarization: 4.14 SS G_CDS: -1.88 Total: 2.26 kcal Atomic # 7 Polarization: -64.65 SS G_CDS: 0.20 Total: -64.44 kcal Atomic # 8 Polarization: -15.92 SS G_CDS: -0.54 Total: -16.46 kcal Atomic # 14 Polarization: 23.90 SS G_CDS: -5.02 Total: 18.88 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -35.83 -8.67 -44.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088417187.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.470 kcal (2) G-P(sol) polarization free energy of solvation -35.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.502 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds