Wall clock time and date at job start Tue Mar 31 2020 17:39:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35657 * 116.99741 * 2 1 4 4 C 1.39344 * 120.53810 * 0.02562 * 3 2 1 5 5 C 1.38299 * 118.43487 * 179.97438 * 4 3 2 6 6 C 1.38761 * 119.44954 * 359.97438 * 5 4 3 7 7 N 1.31375 * 121.06781 * 359.72665 * 6 5 4 8 8 C 1.32862 * 121.69194 * 0.56669 * 7 6 5 9 9 C 1.47834 * 119.78269 * 179.70972 * 8 7 6 10 10 O 1.21560 * 119.99590 * 172.44463 * 9 8 7 11 11 N 1.34774 * 120.00020 * 352.44865 * 9 8 7 12 12 C 1.47138 * 120.18341 * 352.24684 * 11 9 8 13 13 C 1.53622 * 107.51355 * 107.88665 * 12 11 9 14 14 C 1.53490 * 108.46830 * 69.77812 * 13 12 11 15 15 C 1.52473 * 109.14530 * 245.78134 * 14 13 12 16 16 C 1.53119 * 109.67296 * 43.92888 * 15 14 13 17 17 C 1.53443 * 109.34699 * 77.03302 * 16 15 14 18 18 H 1.08992 * 109.63294 * 47.55385 * 17 16 15 19 19 N 1.46500 * 109.62987 * 167.95005 * 17 16 15 20 20 C 1.36933 * 119.99566 * 204.99966 * 19 17 16 21 21 H 1.07997 * 120.00280 * 359.97438 * 20 19 17 22 22 C 1.38815 * 119.99850 * 179.72652 * 20 19 17 23 23 N 1.31621 * 119.99932 * 0.27066 * 22 20 19 24 24 Si 1.86794 * 120.00104 * 180.27316 * 22 20 19 25 25 H 1.48496 * 109.47156 * 359.97438 * 24 22 20 26 26 H 1.48509 * 109.47110 * 119.99769 * 24 22 20 27 27 H 1.48500 * 109.47391 * 239.99539 * 24 22 20 28 28 C 1.46060 * 120.18463 * 172.27558 * 11 9 8 29 29 H 1.09006 * 109.47335 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47557 * 299.99634 * 1 2 3 31 31 H 1.08999 * 109.47580 * 60.00085 * 1 2 3 32 32 H 1.07992 * 120.78182 * 0.02562 * 4 3 2 33 33 H 1.08003 * 120.27833 * 179.97438 * 5 4 3 34 34 H 1.08001 * 119.47197 * 180.02562 * 6 5 4 35 35 H 1.08994 * 109.85247 * 348.37802 * 12 11 9 36 36 H 1.09002 * 109.84653 * 227.38556 * 12 11 9 37 37 H 1.09003 * 109.63789 * 310.07897 * 13 12 11 38 38 H 1.09005 * 109.63346 * 189.46779 * 13 12 11 39 39 H 1.08998 * 109.52213 * 125.88007 * 14 13 12 40 40 H 1.08997 * 109.52425 * 5.68374 * 14 13 12 41 41 H 1.08996 * 109.43497 * 283.86424 * 15 14 13 42 42 H 1.08999 * 109.43073 * 163.98803 * 15 14 13 43 43 H 1.09002 * 109.49247 * 317.07431 * 16 15 14 44 44 H 1.08993 * 109.51392 * 197.00516 * 16 15 14 45 45 H 0.96995 * 119.99838 * 24.99820 * 19 17 16 46 46 H 0.97003 * 120.00267 * 179.97438 * 23 22 20 47 47 H 1.09001 * 109.36210 * 172.82319 * 28 11 9 48 48 H 1.09000 * 109.36571 * 53.22929 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0447 1.2087 0.0000 4 6 1.2968 2.3844 0.0005 5 6 1.9694 3.5928 0.0011 6 6 3.3570 3.6013 0.0016 7 7 4.0418 2.4801 0.0069 8 6 3.4409 1.2952 0.0009 9 6 4.2531 0.0600 0.0008 10 8 3.7144 -1.0216 0.1338 11 7 5.5908 0.1331 -0.1466 12 6 6.2296 1.4167 -0.4772 13 6 6.9675 1.9030 0.7794 14 6 8.1723 0.9836 1.0221 15 6 7.9613 0.2155 2.3222 16 6 6.5208 -0.2993 2.3888 17 6 6.3777 -1.5283 1.4814 18 1 7.1992 -2.2196 1.6688 19 7 5.1017 -2.1949 1.7532 20 6 4.9553 -3.5293 1.4829 21 1 5.7801 -4.0902 1.0689 22 6 3.7481 -4.1622 1.7458 23 7 2.7426 -3.4786 2.2498 24 14 3.5506 -5.9842 1.3842 25 1 4.8185 -6.5181 0.8251 26 1 3.2203 -6.7051 2.6398 27 1 2.4558 -6.1777 0.3997 28 6 6.4144 -1.0616 0.0204 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 0.2173 2.3527 0.0014 33 1 1.4193 4.5223 0.0011 34 1 3.8826 4.5448 0.0024 35 1 5.4710 2.1441 -0.7658 36 1 6.9393 1.2776 -1.2927 37 1 6.2964 1.8618 1.6373 38 1 7.3120 2.9262 0.6288 39 1 9.0793 1.5836 1.0965 40 1 8.2665 0.2804 0.1946 41 1 8.1500 0.8760 3.1684 42 1 8.6502 -0.6283 2.3607 43 1 5.8393 0.4823 2.0526 44 1 6.2798 -0.5751 3.4153 45 1 4.3608 -1.6911 2.1247 46 1 1.8989 -3.9208 2.4332 47 1 7.4427 -0.8338 -0.2604 48 1 6.0339 -1.8556 -0.6222 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088417187.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:39:29 Heat of formation + Delta-G solvation = 13.684223 kcal Electronic energy + Delta-G solvation = -31482.753729 eV Core-core repulsion = 27540.037960 eV Total energy + Delta-G solvation = -3942.715769 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.03117 -40.71475 -39.10090 -38.31184 -36.28874 -34.84663 -33.68497 -33.11379 -31.69642 -30.97696 -28.64850 -28.09113 -27.71755 -25.78842 -24.98270 -23.80310 -23.69128 -22.10703 -21.13285 -19.95045 -18.94038 -18.89507 -18.14560 -17.87890 -16.98278 -16.81831 -16.52636 -16.44212 -16.13897 -15.78769 -15.39693 -15.21854 -15.08494 -14.82393 -14.68105 -14.43113 -14.16482 -13.99415 -13.51073 -13.27087 -13.14038 -13.01843 -12.84944 -12.72563 -12.57766 -12.37797 -12.26487 -12.18191 -11.89575 -11.73786 -11.64160 -11.45195 -11.12188 -10.92299 -10.84250 -10.71806 -10.51905 -9.78400 -9.46576 -9.25094 -8.54630 -7.70284 -4.93350 -0.19183 0.31075 1.42566 1.45692 1.53666 2.12713 2.28220 2.39778 2.65444 2.98810 3.36713 3.59207 3.66538 3.82505 3.90267 4.08350 4.12721 4.14626 4.23290 4.29030 4.32037 4.33398 4.38662 4.44938 4.56137 4.64468 4.65957 4.67712 4.75837 4.92684 4.97112 5.01018 5.08868 5.09734 5.11668 5.23975 5.31970 5.34857 5.50117 5.52486 5.58988 5.64140 5.69677 5.79081 6.13018 6.37792 6.46040 6.74399 6.93826 7.53456 7.73299 8.37557 8.59048 9.52663 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.009614 B = 0.006347 C = 0.004108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2911.777335 B = 4410.617369 C = 6814.642855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.309 6.309 3 C 0.109 3.891 4 C -0.176 4.176 5 C -0.093 4.093 6 C 0.047 3.953 7 N -0.415 5.415 8 C 0.013 3.987 9 C 0.528 3.472 10 O -0.496 6.496 11 N -0.591 5.591 12 C 0.078 3.922 13 C -0.122 4.122 14 C -0.126 4.126 15 C -0.105 4.105 16 C -0.124 4.124 17 C 0.157 3.843 18 H 0.046 0.954 19 N -0.711 5.711 20 C -0.219 4.219 21 H 0.062 0.938 22 C -0.072 4.072 23 N -0.951 5.951 24 Si 0.958 3.042 25 H -0.270 1.270 26 H -0.295 1.295 27 H -0.304 1.304 28 C 0.104 3.896 29 H 0.090 0.910 30 H 0.070 0.930 31 H 0.081 0.919 32 H 0.169 0.831 33 H 0.187 0.813 34 H 0.206 0.794 35 H 0.141 0.859 36 H 0.066 0.934 37 H 0.055 0.945 38 H 0.089 0.911 39 H 0.081 0.919 40 H 0.065 0.935 41 H 0.068 0.932 42 H 0.060 0.940 43 H 0.070 0.930 44 H 0.029 0.971 45 H 0.369 0.631 46 H 0.238 0.762 47 H 0.105 0.895 48 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.693 23.070 -6.399 24.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.219 6.219 3 C 0.059 3.941 4 C -0.202 4.202 5 C -0.112 4.112 6 C -0.114 4.114 7 N -0.127 5.127 8 C -0.123 4.123 9 C 0.313 3.687 10 O -0.367 6.367 11 N -0.325 5.325 12 C -0.044 4.044 13 C -0.160 4.160 14 C -0.163 4.163 15 C -0.143 4.143 16 C -0.162 4.162 17 C 0.047 3.953 18 H 0.064 0.936 19 N -0.350 5.350 20 C -0.352 4.352 21 H 0.080 0.920 22 C -0.265 4.265 23 N -0.602 5.602 24 Si 0.789 3.211 25 H -0.195 1.195 26 H -0.222 1.222 27 H -0.233 1.233 28 C -0.021 4.021 29 H 0.108 0.892 30 H 0.089 0.911 31 H 0.100 0.900 32 H 0.186 0.814 33 H 0.204 0.796 34 H 0.222 0.778 35 H 0.157 0.843 36 H 0.084 0.916 37 H 0.074 0.926 38 H 0.107 0.893 39 H 0.099 0.901 40 H 0.083 0.917 41 H 0.087 0.913 42 H 0.079 0.921 43 H 0.089 0.911 44 H 0.048 0.952 45 H 0.201 0.799 46 H 0.047 0.953 47 H 0.123 0.877 48 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 3.427 22.009 -6.367 23.167 hybrid contribution -1.948 -1.595 0.087 2.519 sum 1.479 20.414 -6.280 21.410 Atomic orbital electron populations 1.23323 0.77064 1.04639 1.02558 1.86525 1.22907 1.26112 1.86405 1.20486 0.92795 0.86693 0.94148 1.22115 1.02228 0.91108 1.04748 1.22657 0.95683 0.98929 0.93931 1.23656 0.92496 0.97077 0.98214 1.67760 1.37912 0.97306 1.09763 1.20771 0.89209 0.93148 1.09151 1.18390 0.83134 0.87979 0.79195 1.91175 1.71263 1.28594 1.45682 1.47726 1.04761 1.10367 1.69677 1.23152 0.99243 0.85081 0.96876 1.22179 0.96453 0.99455 0.97961 1.21931 0.98751 0.98528 0.97066 1.21401 0.94182 0.99753 0.98952 1.22108 0.99053 0.97578 0.97502 1.21087 0.88446 0.92689 0.93090 0.93569 1.42454 1.10621 1.06645 1.75277 1.19427 0.96483 0.86824 1.32459 0.91963 1.25320 0.96378 1.00908 1.03885 1.69912 1.02824 1.35247 1.52231 0.85283 0.77095 0.82148 0.76559 1.19493 1.22248 1.23252 1.22316 0.94582 0.86605 0.98599 0.89156 0.91133 0.90031 0.81401 0.79557 0.77782 0.84255 0.91607 0.92629 0.89267 0.90073 0.91699 0.91347 0.92107 0.91132 0.95236 0.79869 0.95350 0.87739 0.96044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.53 9.83 113.37 1.11 1.64 16 2 O -0.31 -12.75 8.59 -68.85 -0.59 -13.34 16 3 C 0.11 3.74 6.70 22.93 0.15 3.90 16 4 C -0.18 -3.80 9.13 22.55 0.21 -3.60 16 5 C -0.09 -1.35 10.10 22.41 0.23 -1.12 16 6 C 0.05 0.78 11.17 84.89 0.95 1.73 16 7 N -0.41 -10.89 5.94 -184.63 -1.10 -11.99 16 8 C 0.01 0.47 6.60 41.93 0.28 0.75 16 9 C 0.53 23.56 6.64 86.78 0.58 24.14 16 10 O -0.50 -28.19 11.92 16.97 0.20 -27.98 16 11 N -0.59 -21.99 1.72 -822.70 -1.42 -23.40 16 12 C 0.08 2.07 5.32 86.47 0.46 2.53 16 13 C -0.12 -2.80 5.45 30.97 0.17 -2.63 16 14 C -0.13 -2.79 5.48 30.58 0.17 -2.63 16 15 C -0.10 -2.85 5.67 30.46 0.17 -2.67 16 16 C -0.12 -4.69 4.92 30.78 0.15 -4.54 16 17 C 0.16 6.98 2.68 45.28 0.12 7.10 16 18 H 0.05 2.06 7.83 -2.39 -0.02 2.04 16 19 N -0.71 -40.71 3.08 -321.58 -0.99 -41.70 16 20 C -0.22 -13.67 9.89 84.03 0.83 -12.84 16 21 H 0.06 3.77 7.83 -2.91 -0.02 3.74 16 22 C -0.07 -4.65 5.50 84.86 0.47 -4.19 16 23 N -0.95 -64.60 13.06 21.65 0.28 -64.32 16 24 Si 0.96 51.65 29.55 68.60 2.03 53.68 16 25 H -0.27 -13.74 7.11 99.48 0.71 -13.03 16 26 H -0.29 -15.62 7.11 99.48 0.71 -14.92 16 27 H -0.30 -16.64 7.11 99.48 0.71 -15.93 16 28 C 0.10 4.18 4.91 86.60 0.42 4.61 16 29 H 0.09 2.74 8.14 -2.38 -0.02 2.72 16 30 H 0.07 1.67 7.70 -2.39 -0.02 1.65 16 31 H 0.08 1.68 7.70 -2.39 -0.02 1.66 16 32 H 0.17 2.60 6.46 -2.91 -0.02 2.58 16 33 H 0.19 0.91 8.06 -2.91 -0.02 0.88 16 34 H 0.21 1.54 8.06 -2.91 -0.02 1.52 16 35 H 0.14 3.59 4.22 -58.54 -0.25 3.35 16 36 H 0.07 1.53 7.97 -2.39 -0.02 1.51 16 37 H 0.06 1.57 5.45 -2.39 -0.01 1.56 16 38 H 0.09 1.51 8.14 -2.38 -0.02 1.50 16 39 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.06 1.52 4.49 -2.39 -0.01 1.51 16 41 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 42 H 0.06 1.62 7.85 -2.39 -0.02 1.60 16 43 H 0.07 2.77 3.68 -2.39 -0.01 2.76 16 44 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 45 H 0.37 23.54 6.59 -92.71 -0.61 22.93 16 46 H 0.24 15.70 8.31 -92.71 -0.77 14.93 16 47 H 0.10 3.33 5.07 -2.39 -0.01 3.32 16 48 H 0.02 1.03 8.03 -2.39 -0.02 1.01 16 Total: -1.00 -88.82 361.18 5.03 -83.79 By element: Atomic # 1 Polarization: 32.95 SS G_CDS: 0.15 Total: 33.10 kcal Atomic # 6 Polarization: 5.71 SS G_CDS: 6.47 Total: 12.18 kcal Atomic # 7 Polarization: -138.19 SS G_CDS: -3.22 Total: -141.41 kcal Atomic # 8 Polarization: -40.94 SS G_CDS: -0.39 Total: -41.33 kcal Atomic # 14 Polarization: 51.65 SS G_CDS: 2.03 Total: 53.68 kcal Total: -88.82 5.03 -83.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088417187.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.472 kcal (2) G-P(sol) polarization free energy of solvation -88.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.787 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds