Wall clock time and date at job start Tue Mar 31 2020 17:39:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35649 * 116.99835 * 2 1 4 4 C 1.39341 * 120.54120 * 0.22598 * 3 2 1 5 5 C 1.38311 * 118.43689 * 180.28709 * 4 3 2 6 6 C 1.38769 * 119.44301 * 359.72912 * 5 4 3 7 7 N 1.31372 * 121.06881 * 0.02562 * 6 5 4 8 8 C 1.32856 * 121.69625 * 359.97438 * 7 6 5 9 9 C 1.47840 * 119.78267 * 180.02562 * 8 7 6 10 10 O 1.21557 * 119.99741 * 187.70327 * 9 8 7 11 11 N 1.34776 * 119.99869 * 7.70057 * 9 8 7 12 12 C 1.45335 * 120.36450 * 1.68930 * 11 9 8 13 13 C 1.53445 * 108.40864 * 136.68329 * 12 11 9 14 14 C 1.52781 * 109.39887 * 282.29270 * 13 12 11 15 15 C 1.53955 * 109.77913 * 72.87818 * 14 13 12 16 16 C 1.52445 * 110.70077 * 44.37814 * 15 14 13 17 17 C 1.53794 * 109.39827 * 246.29426 * 16 15 14 18 18 H 1.09003 * 109.52429 * 317.86718 * 17 16 15 19 19 N 1.46500 * 109.52237 * 197.74080 * 17 16 15 20 20 C 1.36935 * 120.00382 * 154.99985 * 19 17 16 21 21 H 1.07995 * 119.99803 * 0.02562 * 20 19 17 22 22 C 1.38809 * 120.00214 * 179.97438 * 20 19 17 23 23 N 1.31625 * 120.00290 * 180.02562 * 22 20 19 24 24 Si 1.86804 * 119.99996 * 0.02562 * 22 20 19 25 25 H 1.48499 * 109.46933 * 90.00135 * 24 22 20 26 26 H 1.48498 * 109.47150 * 209.99771 * 24 22 20 27 27 H 1.48501 * 109.47047 * 329.99971 * 24 22 20 28 28 C 1.46954 * 120.36103 * 181.71129 * 11 9 8 29 29 H 1.08999 * 109.47178 * 300.00069 * 1 2 3 30 30 H 1.09000 * 109.47008 * 59.99571 * 1 2 3 31 31 H 1.09000 * 109.47028 * 179.97438 * 1 2 3 32 32 H 1.07993 * 120.78337 * 0.02562 * 4 3 2 33 33 H 1.07995 * 120.28165 * 179.74839 * 5 4 3 34 34 H 1.08005 * 119.46225 * 179.97438 * 6 5 4 35 35 H 1.09002 * 109.67520 * 256.41253 * 12 11 9 36 36 H 1.08999 * 109.67892 * 16.91752 * 12 11 9 37 37 H 1.09004 * 109.48465 * 42.25395 * 13 12 11 38 38 H 1.09004 * 109.48463 * 162.27924 * 13 12 11 39 39 H 1.08997 * 109.37893 * 312.79807 * 14 13 12 40 40 H 1.08998 * 109.42340 * 192.98653 * 14 13 12 41 41 H 1.08993 * 109.22593 * 284.07292 * 15 14 13 42 42 H 1.09008 * 109.21915 * 164.67854 * 15 14 13 43 43 H 1.08998 * 109.47990 * 6.27275 * 16 15 14 44 44 H 1.09003 * 109.48023 * 126.31314 * 16 15 14 45 45 H 0.97002 * 119.99951 * 335.00058 * 19 17 16 46 46 H 0.96993 * 120.00030 * 180.02562 * 23 22 20 47 47 H 1.09005 * 109.53243 * 171.72586 * 28 11 9 48 48 H 1.09002 * 109.59426 * 51.54376 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2087 0.0000 4 6 1.2970 2.3844 0.0047 5 6 1.9696 3.5928 -0.0016 6 6 3.3573 3.6011 -0.0066 7 7 4.0419 2.4799 -0.0060 8 6 3.4410 1.2950 -0.0001 9 6 4.2532 0.0597 0.0010 10 8 3.7149 -1.0217 -0.1348 11 7 5.5904 0.1326 0.1523 12 6 6.2382 1.4182 0.3518 13 6 7.2893 1.2646 1.4591 14 6 6.5950 1.2554 2.8200 15 6 5.8558 -0.0804 3.0187 16 6 6.7316 -1.2506 2.5855 17 6 6.1084 -1.9260 1.3524 18 1 5.0294 -2.0045 1.4863 19 7 6.6797 -3.2647 1.1863 20 6 5.9730 -4.2337 0.5255 21 1 4.9945 -4.0109 0.1265 22 6 6.5146 -5.5020 0.3677 23 7 5.8354 -6.4333 -0.2679 24 14 8.2074 -5.8871 1.0573 25 1 8.0727 -6.3887 2.4485 26 1 8.8595 -6.9244 0.2182 27 1 9.0356 -4.6545 1.0534 28 6 6.4095 -1.0870 0.1170 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 0.2175 2.3527 0.0089 33 1 1.4196 4.5222 -0.0022 34 1 3.8829 4.5446 -0.0119 35 1 6.7224 1.7326 -0.5728 36 1 5.4973 2.1604 0.6487 37 1 7.8293 0.3280 1.3204 38 1 7.9900 2.0983 1.4135 39 1 5.8794 2.0762 2.8665 40 1 7.3388 1.3787 3.6072 41 1 4.9421 -0.0767 2.4246 42 1 5.5987 -0.1950 4.0718 43 1 7.7279 -0.8860 2.3357 44 1 6.8019 -1.9727 3.3990 45 1 7.5588 -3.4647 1.5444 46 1 6.2138 -7.3196 -0.3779 47 1 7.4655 -0.8167 0.1086 48 1 6.1730 -1.6603 -0.7794 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088417188.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:39:34 Heat of formation + Delta-G solvation = 17.468994 kcal Electronic energy + Delta-G solvation = -30666.780955 eV Core-core repulsion = 26724.229306 eV Total energy + Delta-G solvation = -3942.551649 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.22548 -39.65258 -38.33253 -37.21249 -34.99959 -33.77008 -32.62316 -31.87069 -30.98449 -29.92042 -27.92155 -27.40425 -26.09914 -24.76099 -23.33705 -22.98481 -22.34324 -20.84122 -19.83594 -19.35234 -18.11769 -17.42262 -17.41392 -16.98543 -16.16142 -15.70948 -15.59323 -15.37411 -14.70483 -14.45320 -14.35888 -14.22542 -13.93793 -13.82526 -13.43391 -13.32657 -12.97261 -12.68991 -12.53824 -12.45284 -12.22115 -11.83192 -11.67914 -11.57618 -11.50568 -11.29766 -10.87368 -10.71669 -10.62179 -10.30577 -10.18233 -10.12769 -10.10315 -9.82200 -9.62875 -9.39560 -8.92542 -8.86504 -8.64184 -8.00641 -7.08705 -5.60522 -2.96122 0.51608 0.96065 2.93815 2.98810 3.32650 3.46337 3.49095 3.54162 3.80734 4.10065 4.31229 4.45011 4.67963 4.71856 4.87004 4.93248 4.93530 4.95317 5.13037 5.16565 5.22598 5.37289 5.42163 5.51514 5.58437 5.61999 5.67669 5.73194 5.77010 5.91393 5.94805 6.02486 6.10042 6.14510 6.19078 6.20678 6.37055 6.48212 6.57319 6.60663 6.73760 6.86537 6.96091 7.05229 7.29458 7.49989 7.91436 8.22552 8.59137 8.65175 9.37958 10.08875 10.28139 11.58136 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013810 B = 0.004153 C = 0.003439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2026.972316 B = 6739.910034 C = 8138.992702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.267 6.267 3 C 0.137 3.863 4 C -0.176 4.176 5 C -0.112 4.112 6 C 0.046 3.954 7 N -0.410 5.410 8 C 0.053 3.947 9 C 0.558 3.442 10 O -0.497 6.497 11 N -0.584 5.584 12 C 0.072 3.928 13 C -0.152 4.152 14 C -0.110 4.110 15 C -0.115 4.115 16 C -0.133 4.133 17 C 0.168 3.832 18 H 0.072 0.928 19 N -0.745 5.745 20 C -0.233 4.233 21 H 0.096 0.904 22 C 0.002 3.998 23 N -0.936 5.936 24 Si 0.881 3.119 25 H -0.286 1.286 26 H -0.293 1.293 27 H -0.278 1.278 28 C 0.099 3.901 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.108 0.892 32 H 0.145 0.855 33 H 0.140 0.860 34 H 0.164 0.836 35 H 0.052 0.948 36 H 0.145 0.855 37 H 0.081 0.919 38 H 0.064 0.936 39 H 0.055 0.945 40 H 0.054 0.946 41 H 0.062 0.938 42 H 0.051 0.949 43 H 0.063 0.937 44 H 0.061 0.939 45 H 0.359 0.641 46 H 0.257 0.743 47 H 0.072 0.928 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.141 26.377 3.166 27.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.176 6.176 3 C 0.086 3.914 4 C -0.202 4.202 5 C -0.132 4.132 6 C -0.113 4.113 7 N -0.122 5.122 8 C -0.085 4.085 9 C 0.343 3.657 10 O -0.370 6.370 11 N -0.317 5.317 12 C -0.051 4.051 13 C -0.189 4.189 14 C -0.148 4.148 15 C -0.153 4.153 16 C -0.171 4.171 17 C 0.058 3.942 18 H 0.090 0.910 19 N -0.387 5.387 20 C -0.363 4.363 21 H 0.114 0.886 22 C -0.193 4.193 23 N -0.584 5.584 24 Si 0.712 3.288 25 H -0.213 1.213 26 H -0.219 1.219 27 H -0.204 1.204 28 C -0.025 4.025 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.126 0.874 32 H 0.163 0.837 33 H 0.158 0.842 34 H 0.181 0.819 35 H 0.070 0.930 36 H 0.161 0.839 37 H 0.099 0.901 38 H 0.083 0.917 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.080 0.920 42 H 0.070 0.930 43 H 0.082 0.918 44 H 0.080 0.920 45 H 0.192 0.808 46 H 0.067 0.933 47 H 0.090 0.910 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.642 25.376 2.953 26.397 hybrid contribution 0.186 -0.092 0.377 0.430 sum -6.456 25.285 3.330 26.307 Atomic orbital electron populations 1.23239 0.78490 1.05000 1.00898 1.86500 1.20917 1.24204 1.85987 1.20063 0.92365 0.85903 0.93038 1.21766 1.01095 0.91853 1.05489 1.22131 0.95729 0.98272 0.97051 1.22871 0.91570 0.96844 1.00040 1.67797 1.37240 0.97651 1.09553 1.21012 0.88853 0.93038 1.05644 1.17585 0.82096 0.87005 0.79060 1.90944 1.70846 1.27356 1.47870 1.47672 1.05563 1.08452 1.69994 1.22823 0.97736 0.87179 0.97400 1.22344 0.98400 1.02870 0.95307 1.21660 0.98992 0.97424 0.96688 1.21628 0.99355 0.94055 1.00255 1.22120 0.99091 0.96909 0.98953 1.20703 0.98477 0.84269 0.90748 0.90982 1.42777 1.19406 1.07832 1.68641 1.19225 1.00780 0.89410 1.26929 0.88628 1.24664 0.97768 0.96112 1.00773 1.69715 1.37877 1.03509 1.47333 0.86593 0.85946 0.77530 0.78730 1.21286 1.21945 1.20416 1.22525 0.93680 0.84081 1.02258 0.92609 0.92584 0.87365 0.83734 0.84201 0.81897 0.92976 0.83907 0.90094 0.91732 0.92586 0.92680 0.91958 0.93025 0.91845 0.92009 0.80832 0.93299 0.90988 0.90392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.83 101.05 0.99 1.17 16 2 O -0.27 -3.99 8.59 -40.47 -0.35 -4.34 16 3 C 0.14 1.84 6.70 -38.56 -0.26 1.58 16 4 C -0.18 -1.57 9.13 -39.14 -0.36 -1.93 16 5 C -0.11 -0.80 10.10 -39.36 -0.40 -1.19 16 6 C 0.05 0.38 11.17 -17.55 -0.20 0.19 16 7 N -0.41 -4.88 5.97 -9.70 -0.06 -4.94 16 8 C 0.05 0.79 6.63 -82.88 -0.55 0.24 16 9 C 0.56 10.36 6.15 -12.33 -0.08 10.29 16 10 O -0.50 -11.42 13.86 -16.51 -0.23 -11.65 16 11 N -0.58 -9.85 1.68 -175.48 -0.30 -10.14 16 12 C 0.07 0.95 5.40 -4.44 -0.02 0.92 16 13 C -0.15 -1.82 5.45 -26.61 -0.15 -1.97 16 14 C -0.11 -1.32 5.74 -26.35 -0.15 -1.47 16 15 C -0.11 -1.71 5.41 -26.52 -0.14 -1.85 16 16 C -0.13 -2.27 4.97 -26.60 -0.13 -2.40 16 17 C 0.17 3.57 2.38 -67.86 -0.16 3.40 16 18 H 0.07 1.76 6.08 -51.93 -0.32 1.44 16 19 N -0.74 -18.68 4.93 -53.35 -0.26 -18.95 16 20 C -0.23 -7.00 10.39 -15.06 -0.16 -7.16 16 21 H 0.10 3.19 8.06 -52.49 -0.42 2.77 16 22 C 0.00 0.05 5.50 -17.43 -0.10 -0.04 16 23 N -0.94 -30.78 13.97 55.49 0.78 -30.01 16 24 Si 0.88 22.94 27.74 -169.99 -4.71 18.22 16 25 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 26 H -0.29 -7.71 7.11 56.52 0.40 -7.31 16 27 H -0.28 -6.76 6.52 56.52 0.37 -6.39 16 28 C 0.10 1.91 4.76 -4.13 -0.02 1.89 16 29 H 0.06 0.39 7.69 -51.93 -0.40 -0.01 16 30 H 0.06 0.40 7.71 -51.93 -0.40 0.00 16 31 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.14 0.88 6.46 -52.49 -0.34 0.54 16 33 H 0.14 0.51 8.06 -52.49 -0.42 0.09 16 34 H 0.16 0.80 8.06 -52.48 -0.42 0.38 16 35 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.14 1.78 3.78 -87.47 -0.33 1.45 16 37 H 0.08 1.10 3.35 -51.93 -0.17 0.92 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.06 0.63 7.87 -51.93 -0.41 0.22 16 40 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.06 1.06 5.38 -51.93 -0.28 0.78 16 42 H 0.05 0.72 8.14 -51.92 -0.42 0.30 16 43 H 0.06 0.99 5.47 -51.93 -0.28 0.71 16 44 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 45 H 0.36 8.70 5.67 -40.82 -0.23 8.47 16 46 H 0.26 8.03 8.31 -40.82 -0.34 7.69 16 47 H 0.07 1.25 6.07 -51.93 -0.32 0.94 16 48 H 0.08 1.79 8.09 -51.93 -0.42 1.37 16 LS Contribution 362.15 15.07 5.46 5.46 Total: -1.00 -37.08 362.15 -8.42 -45.50 By element: Atomic # 1 Polarization: 16.05 SS G_CDS: -6.87 Total: 9.18 kcal Atomic # 6 Polarization: 3.53 SS G_CDS: -1.87 Total: 1.66 kcal Atomic # 7 Polarization: -64.19 SS G_CDS: 0.16 Total: -64.03 kcal Atomic # 8 Polarization: -15.41 SS G_CDS: -0.58 Total: -15.99 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -4.71 Total: 18.22 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -37.08 -8.42 -45.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088417188.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.971 kcal (2) G-P(sol) polarization free energy of solvation -37.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.502 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds