Wall clock time and date at job start Tue Mar 31 2020 17:39:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35649 * 116.99835 * 2 1 4 4 C 1.39341 * 120.54120 * 0.22598 * 3 2 1 5 5 C 1.38311 * 118.43689 * 180.28709 * 4 3 2 6 6 C 1.38769 * 119.44301 * 359.72912 * 5 4 3 7 7 N 1.31372 * 121.06881 * 0.02562 * 6 5 4 8 8 C 1.32856 * 121.69625 * 359.97438 * 7 6 5 9 9 C 1.47840 * 119.78267 * 180.02562 * 8 7 6 10 10 O 1.21557 * 119.99741 * 187.70327 * 9 8 7 11 11 N 1.34776 * 119.99869 * 7.70057 * 9 8 7 12 12 C 1.45335 * 120.36450 * 1.68930 * 11 9 8 13 13 C 1.53445 * 108.40864 * 136.68329 * 12 11 9 14 14 C 1.52781 * 109.39887 * 282.29270 * 13 12 11 15 15 C 1.53955 * 109.77913 * 72.87818 * 14 13 12 16 16 C 1.52445 * 110.70077 * 44.37814 * 15 14 13 17 17 C 1.53794 * 109.39827 * 246.29426 * 16 15 14 18 18 H 1.09003 * 109.52429 * 317.86718 * 17 16 15 19 19 N 1.46500 * 109.52237 * 197.74080 * 17 16 15 20 20 C 1.36935 * 120.00382 * 154.99985 * 19 17 16 21 21 H 1.07995 * 119.99803 * 0.02562 * 20 19 17 22 22 C 1.38809 * 120.00214 * 179.97438 * 20 19 17 23 23 N 1.31625 * 120.00290 * 180.02562 * 22 20 19 24 24 Si 1.86804 * 119.99996 * 0.02562 * 22 20 19 25 25 H 1.48499 * 109.46933 * 90.00135 * 24 22 20 26 26 H 1.48498 * 109.47150 * 209.99771 * 24 22 20 27 27 H 1.48501 * 109.47047 * 329.99971 * 24 22 20 28 28 C 1.46954 * 120.36103 * 181.71129 * 11 9 8 29 29 H 1.08999 * 109.47178 * 300.00069 * 1 2 3 30 30 H 1.09000 * 109.47008 * 59.99571 * 1 2 3 31 31 H 1.09000 * 109.47028 * 179.97438 * 1 2 3 32 32 H 1.07993 * 120.78337 * 0.02562 * 4 3 2 33 33 H 1.07995 * 120.28165 * 179.74839 * 5 4 3 34 34 H 1.08005 * 119.46225 * 179.97438 * 6 5 4 35 35 H 1.09002 * 109.67520 * 256.41253 * 12 11 9 36 36 H 1.08999 * 109.67892 * 16.91752 * 12 11 9 37 37 H 1.09004 * 109.48465 * 42.25395 * 13 12 11 38 38 H 1.09004 * 109.48463 * 162.27924 * 13 12 11 39 39 H 1.08997 * 109.37893 * 312.79807 * 14 13 12 40 40 H 1.08998 * 109.42340 * 192.98653 * 14 13 12 41 41 H 1.08993 * 109.22593 * 284.07292 * 15 14 13 42 42 H 1.09008 * 109.21915 * 164.67854 * 15 14 13 43 43 H 1.08998 * 109.47990 * 6.27275 * 16 15 14 44 44 H 1.09003 * 109.48023 * 126.31314 * 16 15 14 45 45 H 0.97002 * 119.99951 * 335.00058 * 19 17 16 46 46 H 0.96993 * 120.00030 * 180.02562 * 23 22 20 47 47 H 1.09005 * 109.53243 * 171.72586 * 28 11 9 48 48 H 1.09002 * 109.59426 * 51.54376 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2087 0.0000 4 6 1.2970 2.3844 0.0047 5 6 1.9696 3.5928 -0.0016 6 6 3.3573 3.6011 -0.0066 7 7 4.0419 2.4799 -0.0060 8 6 3.4410 1.2950 -0.0001 9 6 4.2532 0.0597 0.0010 10 8 3.7149 -1.0217 -0.1348 11 7 5.5904 0.1326 0.1523 12 6 6.2382 1.4182 0.3518 13 6 7.2893 1.2646 1.4591 14 6 6.5950 1.2554 2.8200 15 6 5.8558 -0.0804 3.0187 16 6 6.7316 -1.2506 2.5855 17 6 6.1084 -1.9260 1.3524 18 1 5.0294 -2.0045 1.4863 19 7 6.6797 -3.2647 1.1863 20 6 5.9730 -4.2337 0.5255 21 1 4.9945 -4.0109 0.1265 22 6 6.5146 -5.5020 0.3677 23 7 5.8354 -6.4333 -0.2679 24 14 8.2074 -5.8871 1.0573 25 1 8.0727 -6.3887 2.4485 26 1 8.8595 -6.9244 0.2182 27 1 9.0356 -4.6545 1.0534 28 6 6.4095 -1.0870 0.1170 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 0.2175 2.3527 0.0089 33 1 1.4196 4.5222 -0.0022 34 1 3.8829 4.5446 -0.0119 35 1 6.7224 1.7326 -0.5728 36 1 5.4973 2.1604 0.6487 37 1 7.8293 0.3280 1.3204 38 1 7.9900 2.0983 1.4135 39 1 5.8794 2.0762 2.8665 40 1 7.3388 1.3787 3.6072 41 1 4.9421 -0.0767 2.4246 42 1 5.5987 -0.1950 4.0718 43 1 7.7279 -0.8860 2.3357 44 1 6.8019 -1.9727 3.3990 45 1 7.5588 -3.4647 1.5444 46 1 6.2138 -7.3196 -0.3779 47 1 7.4655 -0.8167 0.1086 48 1 6.1730 -1.6603 -0.7794 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088417188.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:39:33 Heat of formation + Delta-G solvation = -8.565802 kcal Electronic energy + Delta-G solvation = -30667.909908 eV Core-core repulsion = 26724.229306 eV Total energy + Delta-G solvation = -3943.680602 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.21807 -40.85760 -39.22830 -38.63741 -36.75294 -35.11342 -34.03488 -33.32973 -31.86287 -31.70890 -29.20371 -28.32184 -27.38263 -26.00949 -24.98917 -23.86849 -23.58176 -22.48201 -21.06210 -20.62974 -19.61178 -18.96445 -18.47256 -18.00900 -17.30263 -16.94088 -16.72807 -16.58995 -16.33490 -15.65524 -15.61528 -15.25478 -15.21704 -14.97052 -14.80422 -14.52486 -14.41725 -14.18206 -13.99236 -13.70894 -13.52044 -13.27970 -13.05911 -12.83283 -12.69751 -12.44368 -12.32007 -12.16999 -11.97204 -11.87289 -11.75508 -11.55391 -11.43118 -11.35501 -11.08234 -10.93576 -10.80142 -9.94700 -9.69302 -9.47628 -9.08167 -8.01753 -5.37479 -0.33580 0.22209 1.34512 1.41313 1.48357 1.84752 2.03121 2.23166 2.48084 2.81473 3.17090 3.28247 3.51817 3.61892 3.77165 3.84016 4.01590 4.02869 4.14309 4.16001 4.21235 4.24393 4.28296 4.30962 4.39929 4.48476 4.53988 4.66111 4.68649 4.77572 4.89327 4.91601 4.95720 5.01730 5.04086 5.12956 5.19643 5.28903 5.30154 5.43709 5.45655 5.50796 5.65324 5.79974 5.90563 6.22329 6.25628 6.54078 6.77513 7.07084 7.31390 7.79513 8.04745 9.21069 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013810 B = 0.004153 C = 0.003439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2026.972316 B = 6739.910034 C = 8138.992702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.318 6.318 3 C 0.115 3.885 4 C -0.169 4.169 5 C -0.086 4.086 6 C 0.053 3.947 7 N -0.421 5.421 8 C 0.010 3.990 9 C 0.548 3.452 10 O -0.566 6.566 11 N -0.580 5.580 12 C 0.066 3.934 13 C -0.148 4.148 14 C -0.101 4.101 15 C -0.113 4.113 16 C -0.121 4.121 17 C 0.169 3.831 18 H 0.026 0.974 19 N -0.744 5.744 20 C -0.228 4.228 21 H 0.036 0.964 22 C -0.068 4.068 23 N -0.989 5.989 24 Si 0.966 3.034 25 H -0.276 1.276 26 H -0.293 1.293 27 H -0.245 1.245 28 C 0.112 3.888 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.100 0.900 32 H 0.176 0.824 33 H 0.192 0.808 34 H 0.208 0.792 35 H 0.059 0.941 36 H 0.160 0.840 37 H 0.065 0.935 38 H 0.100 0.900 39 H 0.069 0.931 40 H 0.078 0.922 41 H 0.032 0.968 42 H 0.061 0.939 43 H 0.089 0.911 44 H 0.056 0.944 45 H 0.369 0.631 46 H 0.258 0.742 47 H 0.100 0.900 48 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.441 31.766 4.949 32.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.229 6.229 3 C 0.064 3.936 4 C -0.195 4.195 5 C -0.105 4.105 6 C -0.108 4.108 7 N -0.133 5.133 8 C -0.125 4.125 9 C 0.336 3.664 10 O -0.444 6.444 11 N -0.311 5.311 12 C -0.055 4.055 13 C -0.185 4.185 14 C -0.139 4.139 15 C -0.151 4.151 16 C -0.159 4.159 17 C 0.060 3.940 18 H 0.044 0.956 19 N -0.388 5.388 20 C -0.359 4.359 21 H 0.054 0.946 22 C -0.259 4.259 23 N -0.640 5.640 24 Si 0.792 3.208 25 H -0.202 1.202 26 H -0.220 1.220 27 H -0.169 1.169 28 C -0.013 4.013 29 H 0.098 0.902 30 H 0.097 0.903 31 H 0.119 0.881 32 H 0.193 0.807 33 H 0.209 0.791 34 H 0.225 0.775 35 H 0.077 0.923 36 H 0.175 0.825 37 H 0.084 0.916 38 H 0.118 0.882 39 H 0.088 0.912 40 H 0.097 0.903 41 H 0.051 0.949 42 H 0.080 0.920 43 H 0.108 0.892 44 H 0.074 0.926 45 H 0.203 0.797 46 H 0.067 0.933 47 H 0.119 0.881 48 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -4.921 30.846 4.758 31.596 hybrid contribution -0.582 -1.561 -0.244 1.684 sum -5.503 29.285 4.513 30.137 Atomic orbital electron populations 1.23476 0.76293 1.05402 1.03124 1.86437 1.23579 1.26290 1.86579 1.20371 0.92297 0.86862 0.94051 1.22177 1.02515 0.90760 1.04067 1.22738 0.95482 0.99265 0.93024 1.23720 0.92712 0.96876 0.97515 1.67568 1.37925 0.97511 1.10286 1.20383 0.89156 0.92471 1.10465 1.18349 0.82641 0.87905 0.77519 1.90894 1.72227 1.30336 1.50965 1.47707 1.05191 1.08804 1.69418 1.23171 0.98481 0.85342 0.98501 1.22336 0.98199 1.03433 0.94549 1.21631 0.99450 0.95425 0.97364 1.21594 0.98175 0.95197 1.00131 1.22026 1.00426 0.97310 0.96161 1.20766 0.96125 0.83294 0.93839 0.95631 1.42641 1.19432 1.08510 1.68224 1.18932 0.99063 0.91063 1.26858 0.94620 1.25632 1.03290 0.95461 1.01481 1.69943 1.40606 1.04108 1.49333 0.85253 0.79481 0.78294 0.77757 1.20203 1.21956 1.16929 1.22056 0.95455 0.85013 0.98771 0.90153 0.90316 0.88149 0.80686 0.79132 0.77536 0.92286 0.82456 0.91632 0.88212 0.91235 0.90325 0.94888 0.92038 0.89239 0.92560 0.79719 0.93324 0.88148 0.95713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.22 9.83 113.37 1.11 1.33 16 2 O -0.32 -10.49 8.59 -68.77 -0.59 -11.08 16 3 C 0.11 3.17 6.70 22.93 0.15 3.32 16 4 C -0.17 -2.56 9.13 22.55 0.21 -2.35 16 5 C -0.09 -0.77 10.10 22.41 0.23 -0.54 16 6 C 0.05 0.64 11.17 84.89 0.95 1.59 16 7 N -0.42 -9.26 5.97 -184.62 -1.10 -10.36 16 8 C 0.01 0.32 6.63 41.93 0.28 0.60 16 9 C 0.55 22.47 6.15 86.78 0.53 23.01 16 10 O -0.57 -29.87 13.86 16.97 0.24 -29.64 16 11 N -0.58 -20.75 1.68 -827.37 -1.39 -22.14 16 12 C 0.07 1.67 5.40 86.75 0.47 2.14 16 13 C -0.15 -3.07 5.45 30.67 0.17 -2.90 16 14 C -0.10 -2.09 5.74 30.84 0.18 -1.92 16 15 C -0.11 -3.30 5.41 30.73 0.17 -3.14 16 16 C -0.12 -4.13 4.97 30.68 0.15 -3.98 16 17 C 0.17 7.67 2.38 45.04 0.11 7.78 16 18 H 0.03 1.41 6.08 -2.39 -0.01 1.39 16 19 N -0.74 -39.26 4.93 -322.71 -1.59 -40.85 16 20 C -0.23 -14.79 10.39 84.03 0.87 -13.92 16 21 H 0.04 2.69 8.06 -2.91 -0.02 2.67 16 22 C -0.07 -4.38 5.50 84.86 0.47 -3.92 16 23 N -0.99 -68.93 13.97 21.65 0.30 -68.63 16 24 Si 0.97 48.49 27.74 68.60 1.90 50.40 16 25 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 26 H -0.29 -14.69 7.11 99.48 0.71 -13.98 16 27 H -0.25 -10.88 6.52 99.48 0.65 -10.24 16 28 C 0.11 4.68 4.76 86.07 0.41 5.09 16 29 H 0.08 1.09 7.69 -2.39 -0.02 1.07 16 30 H 0.08 1.10 7.71 -2.39 -0.02 1.08 16 31 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.18 1.46 6.46 -2.91 -0.02 1.44 16 33 H 0.19 -0.11 8.06 -2.91 -0.02 -0.14 16 34 H 0.21 0.65 8.06 -2.91 -0.02 0.62 16 35 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.16 3.60 3.78 -72.57 -0.27 3.32 16 37 H 0.07 1.58 3.35 -2.39 -0.01 1.57 16 38 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.07 1.29 7.87 -2.39 -0.02 1.28 16 40 H 0.08 1.32 8.14 -2.39 -0.02 1.31 16 41 H 0.03 1.17 5.38 -2.39 -0.01 1.16 16 42 H 0.06 1.66 8.14 -2.38 -0.02 1.64 16 43 H 0.09 2.59 5.47 -2.39 -0.01 2.58 16 44 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 45 H 0.37 17.85 5.67 -92.71 -0.53 17.32 16 46 H 0.26 16.89 8.31 -92.71 -0.77 16.12 16 47 H 0.10 3.53 6.07 -2.38 -0.01 3.52 16 48 H 0.02 1.27 8.09 -2.39 -0.02 1.25 16 Total: -1.00 -95.44 362.15 4.36 -91.08 By element: Atomic # 1 Polarization: 28.91 SS G_CDS: 0.15 Total: 29.05 kcal Atomic # 6 Polarization: 5.73 SS G_CDS: 6.45 Total: 12.18 kcal Atomic # 7 Polarization: -138.21 SS G_CDS: -3.78 Total: -141.99 kcal Atomic # 8 Polarization: -40.36 SS G_CDS: -0.36 Total: -40.72 kcal Atomic # 14 Polarization: 48.49 SS G_CDS: 1.90 Total: 50.40 kcal Total: -95.44 4.36 -91.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088417188.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.513 kcal (2) G-P(sol) polarization free energy of solvation -95.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds