Wall clock time and date at job start Tue Mar 31 2020 17:31:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35497 * 116.99806 * 2 1 4 4 C 1.39173 * 119.52732 * 180.25507 * 3 2 1 5 5 C 1.37946 * 119.26483 * 180.32059 * 4 3 2 6 6 C 1.40288 * 118.35871 * 359.43401 * 5 4 3 7 7 C 1.47608 * 120.50113 * 180.30162 * 6 5 4 8 8 O 1.21586 * 120.00189 * 359.97438 * 7 6 5 9 9 N 1.34779 * 120.00305 * 180.02562 * 7 6 5 10 10 C 1.46499 * 119.99962 * 179.97438 * 9 7 6 11 11 C 1.53005 * 109.46880 * 176.62377 * 10 9 7 12 12 N 1.46500 * 109.47002 * 54.62677 * 11 10 9 13 13 C 1.36936 * 119.99953 * 62.83888 * 12 11 10 14 14 H 1.08003 * 120.00172 * 354.25808 * 13 12 11 15 15 C 1.38817 * 119.99976 * 174.25264 * 13 12 11 16 16 N 1.31619 * 119.99956 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00073 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.46979 * 60.00205 * 17 15 13 19 19 H 1.48496 * 109.47496 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47153 * 300.00436 * 17 15 13 21 21 C 1.53000 * 109.47313 * 294.62567 * 11 10 9 22 22 C 1.52997 * 109.47178 * 179.97438 * 21 11 10 23 23 C 1.53002 * 109.46863 * 60.00328 * 22 21 11 24 24 C 1.53002 * 109.47285 * 299.99636 * 23 22 21 25 25 C 1.53002 * 109.47156 * 174.62633 * 11 10 9 26 26 C 1.39525 * 119.00264 * 0.27222 * 6 5 4 27 27 N 1.31665 * 120.62438 * 0.02889 * 26 6 5 28 28 H 1.09007 * 109.47573 * 300.00188 * 1 2 3 29 29 H 1.09003 * 109.47067 * 60.00185 * 1 2 3 30 30 H 1.09001 * 109.47307 * 180.02562 * 1 2 3 31 31 H 1.08004 * 120.36211 * 0.05044 * 4 3 2 32 32 H 1.08004 * 120.82415 * 179.71331 * 5 4 3 33 33 H 0.96996 * 119.99779 * 359.97438 * 9 7 6 34 34 H 1.08994 * 109.47504 * 296.62140 * 10 9 7 35 35 H 1.09000 * 109.47414 * 56.63163 * 10 9 7 36 36 H 0.97004 * 120.00284 * 242.84280 * 12 11 10 37 37 H 0.96995 * 119.99755 * 179.97438 * 16 15 13 38 38 H 1.08997 * 109.47018 * 300.00367 * 21 11 10 39 39 H 1.09006 * 109.46777 * 60.00375 * 21 11 10 40 40 H 1.08997 * 109.47806 * 300.00326 * 22 21 11 41 41 H 1.09000 * 109.47342 * 179.97438 * 22 21 11 42 42 H 1.09006 * 109.47315 * 180.02562 * 23 22 21 43 43 H 1.09005 * 109.47320 * 59.99929 * 23 22 21 44 44 H 1.08997 * 109.46885 * 300.00308 * 24 23 22 45 45 H 1.08996 * 109.47629 * 179.97438 * 24 23 22 46 46 H 1.09002 * 109.47026 * 299.99872 * 25 11 10 47 47 H 1.08997 * 109.46911 * 59.99794 * 25 11 10 48 48 H 1.07994 * 119.68635 * 179.97438 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0441 1.2073 0.0000 4 6 3.4345 1.2687 -0.0054 5 6 4.0551 2.5007 0.0014 6 6 3.2524 3.6512 0.0013 7 6 3.8667 4.9934 0.0017 8 8 5.0772 5.1079 0.0025 9 7 3.0859 6.0920 0.0022 10 6 3.6957 7.4240 0.0031 11 6 2.5987 8.4872 -0.0815 12 7 1.6323 8.2787 0.9996 13 6 2.0311 8.3880 2.3051 14 1 3.0748 8.5358 2.5403 15 6 1.0940 8.3091 3.3261 16 7 -0.1779 8.1286 3.0395 17 14 1.6380 8.4589 5.1068 18 1 2.2869 9.7780 5.3168 19 1 0.4555 8.3412 5.9973 20 1 2.6042 7.3762 5.4221 21 6 1.8858 8.3782 -1.4308 22 6 0.7883 9.4409 -1.5151 23 6 1.4130 10.8309 -1.3792 24 6 2.1259 10.9400 -0.0298 25 6 3.2238 9.8770 0.0542 26 6 1.8645 3.5078 0.0003 27 7 1.3138 2.3118 -0.0001 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 4.0210 0.3618 -0.0104 32 1 5.1324 2.5777 0.0021 33 1 2.1203 6.0006 0.0019 34 1 4.2654 7.5622 0.9220 35 1 4.3611 7.5196 -0.8549 36 1 0.7098 8.0631 0.7908 37 1 -0.8326 8.0731 3.7529 38 1 2.6048 8.5332 -2.2352 39 1 1.4403 7.3880 -1.5275 40 1 0.0694 9.2855 -0.7108 41 1 0.2807 9.3636 -2.4766 42 1 0.6311 11.5881 -1.4388 43 1 2.1320 10.9865 -2.1836 44 1 1.4070 10.7845 0.7745 45 1 2.5714 11.9301 0.0669 46 1 3.7317 9.9547 1.0156 47 1 3.9429 10.0321 -0.7501 48 1 1.2360 4.3860 0.0006 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115621506.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:26 Heat of formation + Delta-G solvation = -56.401120 kcal Electronic energy + Delta-G solvation = -29498.805322 eV Core-core repulsion = 25553.050425 eV Total energy + Delta-G solvation = -3945.754897 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.92326 -40.82685 -39.83539 -38.63740 -35.92354 -35.08839 -33.64014 -33.05657 -31.90843 -31.51823 -30.18504 -28.42046 -26.77970 -25.68612 -25.12476 -24.13850 -23.39767 -21.90905 -21.50743 -19.85851 -19.58176 -19.08511 -18.66447 -18.23699 -17.11851 -16.86559 -16.50382 -16.17274 -16.10918 -15.82388 -15.57823 -15.36952 -15.16461 -14.99287 -14.74066 -14.40465 -14.25766 -14.15526 -13.85614 -13.51387 -13.38301 -13.22443 -12.89042 -12.78659 -12.78541 -12.58368 -12.51508 -12.21378 -12.07031 -11.86073 -11.65766 -11.33379 -11.27355 -11.08922 -11.05260 -10.75650 -10.68359 -10.64100 -10.01611 -9.60415 -8.89106 -7.86126 -5.10114 -0.37561 0.10023 1.45728 1.47880 1.51370 1.81933 1.99024 2.27409 2.59909 2.75322 3.10986 3.46969 3.67231 3.78213 3.84166 3.94781 3.95551 4.03599 4.06639 4.16240 4.41722 4.42446 4.43904 4.49978 4.56970 4.66349 4.69867 4.77027 4.78484 4.80638 4.83995 4.92240 4.98405 5.05682 5.09563 5.20395 5.22983 5.24741 5.45272 5.51177 5.53204 5.58443 5.63657 5.70444 5.83624 6.05660 6.36734 6.57831 6.62931 7.22145 7.46046 8.18756 8.44773 9.35936 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.010286 B = 0.003726 C = 0.003291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2721.536005 B = 7512.994429 C = 8505.670225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.308 6.308 3 C 0.328 3.672 4 C -0.189 4.189 5 C 0.014 3.986 6 C -0.233 4.233 7 C 0.561 3.439 8 O -0.584 6.584 9 N -0.691 5.691 10 C 0.121 3.879 11 C 0.189 3.811 12 N -0.709 5.709 13 C -0.206 4.206 14 H 0.062 0.938 15 C -0.061 4.061 16 N -0.958 5.958 17 Si 0.943 3.057 18 H -0.285 1.285 19 H -0.300 1.300 20 H -0.292 1.292 21 C -0.108 4.108 22 C -0.112 4.112 23 C -0.108 4.108 24 C -0.106 4.106 25 C -0.114 4.114 26 C 0.181 3.819 27 N -0.554 5.554 28 H 0.053 0.947 29 H 0.060 0.940 30 H 0.128 0.872 31 H 0.177 0.823 32 H 0.163 0.837 33 H 0.405 0.595 34 H 0.036 0.964 35 H 0.071 0.929 36 H 0.377 0.623 37 H 0.246 0.754 38 H 0.084 0.916 39 H 0.061 0.939 40 H 0.043 0.957 41 H 0.074 0.926 42 H 0.057 0.943 43 H 0.074 0.926 44 H 0.040 0.960 45 H 0.056 0.944 46 H 0.039 0.961 47 H 0.073 0.927 48 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.745 -9.397 -12.553 15.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.214 6.214 3 C 0.149 3.851 4 C -0.209 4.209 5 C -0.012 4.012 6 C -0.239 4.239 7 C 0.349 3.651 8 O -0.467 6.467 9 N -0.341 5.341 10 C -0.005 4.005 11 C 0.099 3.901 12 N -0.350 5.350 13 C -0.339 4.339 14 H 0.080 0.920 15 C -0.253 4.253 16 N -0.610 5.610 17 Si 0.775 3.225 18 H -0.211 1.211 19 H -0.227 1.227 20 H -0.219 1.219 21 C -0.146 4.146 22 C -0.150 4.150 23 C -0.145 4.145 24 C -0.144 4.144 25 C -0.153 4.153 26 C 0.024 3.976 27 N -0.278 5.278 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.146 0.854 31 H 0.194 0.806 32 H 0.181 0.819 33 H 0.242 0.758 34 H 0.054 0.946 35 H 0.089 0.911 36 H 0.211 0.789 37 H 0.055 0.945 38 H 0.102 0.898 39 H 0.080 0.920 40 H 0.062 0.938 41 H 0.092 0.908 42 H 0.076 0.924 43 H 0.092 0.908 44 H 0.059 0.941 45 H 0.074 0.926 46 H 0.058 0.942 47 H 0.092 0.908 48 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 2.845 -9.612 -12.398 15.944 hybrid contribution -0.083 0.379 1.743 1.786 sum 2.762 -9.232 -10.655 14.367 Atomic orbital electron populations 1.23140 0.75535 1.05008 1.02450 1.86203 1.24597 1.23803 1.86846 1.20427 0.90238 0.84950 0.89499 1.21284 0.91472 1.00121 1.08047 1.21679 1.01666 0.89579 0.88257 1.20800 0.95393 0.94499 1.13186 1.18151 0.86250 0.84625 0.76085 1.90710 1.15092 1.87670 1.53209 1.45682 1.10560 1.05450 1.72396 1.21808 0.96431 0.82111 1.00147 1.20036 0.89098 0.91988 0.89018 1.42478 1.08623 1.83360 1.00507 1.19152 0.92096 1.38346 0.84263 0.91987 1.25112 0.95555 1.04802 0.99870 1.69731 1.00625 1.59260 1.31354 0.85676 0.76147 0.77598 0.83084 1.21125 1.22674 1.21937 1.21675 0.98321 0.99116 0.95509 1.21434 0.97572 0.94780 1.01218 1.21452 0.99500 0.96715 0.96835 1.21309 0.97764 0.97404 0.97923 1.21785 0.97746 0.95203 1.00599 1.22748 0.91640 0.94259 0.89000 1.67335 1.40971 0.98849 1.20622 0.92799 0.92112 0.85375 0.80569 0.81945 0.75755 0.94597 0.91074 0.78882 0.94514 0.89752 0.92023 0.93778 0.90768 0.92374 0.90753 0.94077 0.92560 0.94220 0.90809 0.81419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 10.37 113.37 1.18 1.73 16 2 O -0.31 -6.73 10.46 -87.98 -0.92 -7.65 16 3 C 0.33 8.15 7.49 84.83 0.64 8.78 16 4 C -0.19 -4.07 10.02 22.43 0.22 -3.85 16 5 C 0.01 0.34 9.70 22.70 0.22 0.56 16 6 C -0.23 -6.80 5.89 -20.00 -0.12 -6.92 16 7 C 0.56 19.25 7.77 86.72 0.67 19.93 16 8 O -0.58 -23.19 16.41 -3.99 -0.07 -23.26 16 9 N -0.69 -22.98 5.05 -466.19 -2.35 -25.33 16 10 C 0.12 4.16 4.37 86.38 0.38 4.54 16 11 C 0.19 6.30 0.41 3.61 0.00 6.31 16 12 N -0.71 -29.99 3.40 -303.33 -1.03 -31.02 16 13 C -0.21 -10.32 8.70 84.03 0.73 -9.59 16 14 H 0.06 3.17 6.77 -2.91 -0.02 3.15 16 15 C -0.06 -3.27 5.50 84.86 0.47 -2.80 16 16 N -0.96 -54.56 13.07 21.65 0.28 -54.28 16 17 Si 0.94 45.63 29.55 68.60 2.03 47.66 16 18 H -0.28 -13.50 7.11 99.48 0.71 -12.79 16 19 H -0.30 -14.80 7.11 99.48 0.71 -14.10 16 20 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 21 C -0.11 -2.92 4.65 30.59 0.14 -2.78 16 22 C -0.11 -3.05 5.75 30.59 0.18 -2.87 16 23 C -0.11 -2.80 5.92 30.60 0.18 -2.62 16 24 C -0.11 -3.40 5.77 30.61 0.18 -3.23 16 25 C -0.11 -3.68 4.52 30.61 0.14 -3.54 16 26 C 0.18 5.09 10.71 85.03 0.91 6.00 16 27 N -0.55 -15.31 9.18 -307.82 -2.82 -18.14 16 28 H 0.05 1.01 8.10 -2.38 -0.02 0.99 16 29 H 0.06 1.03 8.10 -2.39 -0.02 1.02 16 30 H 0.13 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.18 2.66 8.06 -2.91 -0.02 2.64 16 32 H 0.16 3.66 7.73 -2.91 -0.02 3.63 16 33 H 0.41 12.94 5.44 -92.71 -0.50 12.43 16 34 H 0.04 1.45 7.50 -2.39 -0.02 1.43 16 35 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 36 H 0.38 17.27 6.63 -92.71 -0.61 16.66 16 37 H 0.25 14.02 8.31 -92.71 -0.77 13.25 16 38 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 39 H 0.06 1.61 7.28 -2.38 -0.02 1.60 16 40 H 0.04 1.48 6.92 -2.39 -0.02 1.46 16 41 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 42 H 0.06 1.45 8.14 -2.38 -0.02 1.43 16 43 H 0.07 1.62 8.14 -2.38 -0.02 1.60 16 44 H 0.04 1.67 7.60 -2.39 -0.02 1.65 16 45 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 46 H 0.04 1.46 7.23 -2.39 -0.02 1.45 16 47 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 48 H 0.17 4.47 6.41 -2.91 -0.02 4.45 16 Total: -1.00 -64.39 383.21 1.10 -63.29 By element: Atomic # 1 Polarization: 39.22 SS G_CDS: -0.13 Total: 39.08 kcal Atomic # 6 Polarization: 3.54 SS G_CDS: 6.11 Total: 9.65 kcal Atomic # 7 Polarization: -122.85 SS G_CDS: -5.93 Total: -128.78 kcal Atomic # 8 Polarization: -29.93 SS G_CDS: -0.99 Total: -30.91 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.66 kcal Total: -64.39 1.10 -63.29 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115621506.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.894 kcal (2) G-P(sol) polarization free energy of solvation -64.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds