Wall clock time and date at job start Tue Mar 31 2020 17:31:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35426 * 117.00494 * 2 1 4 4 N 1.32236 * 119.79590 * 359.97438 * 3 2 1 5 5 C 1.31888 * 121.80049 * 179.97438 * 4 3 2 6 6 C 1.38351 * 121.18368 * 0.02562 * 5 4 3 7 7 C 1.38342 * 119.46013 * 359.97438 * 6 5 4 8 8 C 1.39986 * 118.34861 * 359.97438 * 7 6 5 9 9 C 1.47518 * 120.59638 * 179.97438 * 8 7 6 10 10 O 1.21597 * 119.99835 * 180.02562 * 9 8 7 11 11 N 1.34773 * 120.00310 * 0.02562 * 9 8 7 12 12 C 1.46501 * 120.00446 * 179.97438 * 11 9 8 13 13 C 1.52997 * 109.47453 * 176.62674 * 12 11 9 14 14 N 1.46495 * 109.47342 * 54.62396 * 13 12 11 15 15 C 1.36941 * 119.99856 * 62.84246 * 14 13 12 16 16 H 1.08006 * 119.99803 * 354.26010 * 15 14 13 17 17 C 1.38806 * 120.00407 * 174.25820 * 15 14 13 18 18 N 1.31619 * 119.99819 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00207 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47344 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47138 * 119.99884 * 19 17 15 22 22 H 1.48506 * 109.47160 * 239.99762 * 19 17 15 23 23 C 1.53007 * 109.46902 * 294.62704 * 13 12 11 24 24 C 1.52997 * 109.46902 * 179.97438 * 23 13 12 25 25 C 1.52997 * 109.47503 * 60.00044 * 24 23 13 26 26 C 1.52999 * 109.47149 * 300.00071 * 25 24 23 27 27 C 1.53002 * 109.47179 * 174.62749 * 13 12 11 28 28 H 1.09001 * 109.46957 * 300.00539 * 1 2 3 29 29 H 1.09003 * 109.47044 * 59.99801 * 1 2 3 30 30 H 1.08997 * 109.47421 * 179.97438 * 1 2 3 31 31 H 1.07995 * 119.40491 * 180.02562 * 5 4 3 32 32 H 1.07997 * 120.27051 * 179.97438 * 6 5 4 33 33 H 1.08004 * 120.82341 * 180.02562 * 7 6 5 34 34 H 0.97003 * 119.99966 * 359.97438 * 11 9 8 35 35 H 1.09001 * 109.46925 * 296.62773 * 12 11 9 36 36 H 1.08999 * 109.46830 * 56.62287 * 12 11 9 37 37 H 0.96993 * 120.00355 * 242.84388 * 14 13 12 38 38 H 0.97004 * 120.00415 * 180.02562 * 18 17 15 39 39 H 1.08999 * 109.46942 * 300.00223 * 23 13 12 40 40 H 1.09004 * 109.46961 * 60.00214 * 23 13 12 41 41 H 1.08999 * 109.47504 * 299.99878 * 24 23 13 42 42 H 1.09007 * 109.47131 * 180.02562 * 24 23 13 43 43 H 1.08996 * 109.47363 * 179.97438 * 25 24 23 44 44 H 1.08999 * 109.46876 * 59.99450 * 25 24 23 45 45 H 1.09007 * 109.46951 * 300.00084 * 26 25 24 46 46 H 1.09003 * 109.47572 * 179.97438 * 26 25 24 47 47 H 1.08994 * 109.47241 * 299.99934 * 27 13 12 48 48 H 1.09001 * 109.46765 * 60.00269 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0439 1.2066 0.0000 4 7 1.3199 2.3131 -0.0005 5 6 1.8772 3.5084 0.0000 6 6 3.2527 3.6574 0.0005 7 6 4.0589 2.5332 0.0011 8 6 3.4450 1.2751 0.0016 9 6 4.2570 0.0435 0.0017 10 8 3.7124 -1.0437 0.0017 11 7 5.6024 0.1232 0.0017 12 6 6.4088 -1.0999 0.0024 13 6 7.8917 -0.7332 -0.0826 14 7 8.2275 0.1968 0.9984 15 6 8.1093 -0.1995 2.3039 16 1 7.6815 -1.1629 2.5391 17 6 8.5393 0.6369 3.3248 18 7 9.0611 1.8107 3.0381 19 14 8.3786 0.0960 5.1055 20 1 7.7651 -1.2553 5.1590 21 1 9.7236 0.0547 5.7336 22 1 7.5188 1.0589 5.8397 23 6 8.1767 -0.0708 -1.4321 24 6 9.6595 0.2965 -1.5168 25 6 10.5073 -0.9699 -1.3812 26 6 10.2223 -1.6323 -0.0318 27 6 8.7389 -2.0000 0.0527 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.2487 4.3866 -0.0001 32 1 3.6935 4.6434 0.0005 33 1 5.1351 2.6239 0.0019 34 1 6.0368 0.9905 0.0013 35 1 6.2241 -1.6563 0.9213 36 1 6.1368 -1.7148 -0.8555 37 1 8.5336 1.0931 0.7895 38 1 9.3620 2.3951 3.7514 39 1 7.9268 -0.7626 -2.2364 40 1 7.5731 0.8318 -1.5285 41 1 9.9090 0.9886 -0.7125 42 1 9.8625 0.7689 -2.4780 43 1 11.5636 -0.7082 -1.4420 44 1 10.2578 -1.6619 -2.1855 45 1 10.4716 -0.9402 0.7726 46 1 10.8259 -2.5348 0.0647 47 1 8.5359 -2.4719 1.0140 48 1 8.4890 -2.6918 -0.7517 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115706855.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:30 Heat of formation + Delta-G solvation = -53.615115 kcal Electronic energy + Delta-G solvation = -29892.590597 eV Core-core repulsion = 25946.956511 eV Total energy + Delta-G solvation = -3945.634087 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.92255 -40.67796 -39.53574 -38.89387 -35.87168 -35.08549 -33.83552 -32.61742 -31.82401 -31.53329 -30.22649 -28.26193 -27.00892 -25.70206 -25.17977 -23.86771 -23.42004 -21.94444 -21.44103 -19.87788 -19.54965 -19.04490 -18.51548 -18.10369 -17.14111 -16.84374 -16.45623 -16.15784 -16.05637 -15.83209 -15.56731 -15.43041 -15.10602 -14.93231 -14.82436 -14.39230 -14.26218 -14.00703 -13.54098 -13.49981 -13.39365 -13.23494 -12.90132 -12.84025 -12.70168 -12.58623 -12.48882 -12.20297 -12.02638 -11.86853 -11.66861 -11.30746 -11.20003 -11.06475 -11.02772 -10.79276 -10.69288 -10.56649 -9.94955 -9.51610 -8.89287 -7.87055 -5.10661 -0.33237 0.22300 1.42703 1.47533 1.52650 1.91418 2.07738 2.28188 2.59022 2.82010 3.28429 3.45942 3.77304 3.79256 3.83032 3.94054 3.99638 4.03539 4.15440 4.25552 4.39556 4.39687 4.40738 4.47598 4.51665 4.68981 4.69575 4.76822 4.78702 4.82935 4.88866 4.93141 4.98159 5.08413 5.10729 5.20143 5.24009 5.39883 5.46512 5.50856 5.52857 5.59022 5.63421 5.70533 5.82997 6.21165 6.36504 6.61350 6.75172 7.30454 7.45819 8.17283 8.44856 9.35241 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.010673 B = 0.004013 C = 0.003513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2622.927719 B = 6975.218846 C = 7969.195907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.303 6.303 3 C 0.348 3.652 4 N -0.556 5.556 5 C 0.165 3.835 6 C -0.206 4.206 7 C -0.008 4.008 8 C -0.233 4.233 9 C 0.553 3.447 10 O -0.573 6.573 11 N -0.692 5.692 12 C 0.123 3.877 13 C 0.190 3.810 14 N -0.707 5.707 15 C -0.205 4.205 16 H 0.059 0.941 17 C -0.059 4.059 18 N -0.956 5.956 19 Si 0.941 3.059 20 H -0.281 1.281 21 H -0.297 1.297 22 H -0.301 1.301 23 C -0.108 4.108 24 C -0.111 4.111 25 C -0.108 4.108 26 C -0.106 4.106 27 C -0.113 4.113 28 H 0.061 0.939 29 H 0.066 0.934 30 H 0.112 0.888 31 H 0.207 0.793 32 H 0.181 0.819 33 H 0.155 0.845 34 H 0.405 0.595 35 H 0.031 0.969 36 H 0.065 0.935 37 H 0.379 0.621 38 H 0.246 0.754 39 H 0.081 0.919 40 H 0.062 0.938 41 H 0.045 0.955 42 H 0.075 0.925 43 H 0.059 0.941 44 H 0.072 0.928 45 H 0.042 0.958 46 H 0.056 0.944 47 H 0.037 0.963 48 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.147 3.626 -12.590 15.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.208 6.208 3 C 0.169 3.831 4 N -0.281 5.281 5 C 0.009 3.991 6 C -0.226 4.226 7 C -0.034 4.034 8 C -0.239 4.239 9 C 0.340 3.660 10 O -0.454 6.454 11 N -0.342 5.342 12 C -0.003 4.003 13 C 0.099 3.901 14 N -0.348 5.348 15 C -0.337 4.337 16 H 0.077 0.923 17 C -0.252 4.252 18 N -0.607 5.607 19 Si 0.773 3.227 20 H -0.207 1.207 21 H -0.224 1.224 22 H -0.229 1.229 23 C -0.146 4.146 24 C -0.149 4.149 25 C -0.145 4.145 26 C -0.143 4.143 27 C -0.153 4.153 28 H 0.079 0.921 29 H 0.085 0.915 30 H 0.131 0.869 31 H 0.224 0.776 32 H 0.199 0.801 33 H 0.172 0.828 34 H 0.243 0.757 35 H 0.049 0.951 36 H 0.084 0.916 37 H 0.213 0.787 38 H 0.056 0.944 39 H 0.100 0.900 40 H 0.081 0.919 41 H 0.064 0.936 42 H 0.094 0.906 43 H 0.078 0.922 44 H 0.091 0.909 45 H 0.061 0.939 46 H 0.074 0.926 47 H 0.056 0.944 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -10.332 2.341 -12.442 16.341 hybrid contribution 0.960 0.373 1.746 2.027 sum -9.372 2.714 -10.696 14.478 Atomic orbital electron populations 1.23121 0.76050 1.04408 1.02630 1.86499 1.24116 1.24146 1.86017 1.20029 0.88366 0.85568 0.89124 1.67538 1.40344 0.99027 1.21144 1.23439 0.93965 0.93869 0.87860 1.22365 0.94479 1.00714 1.05025 1.21967 1.01808 0.90225 0.89372 1.20089 0.91745 0.95364 1.16723 1.18188 0.82609 0.88578 0.76609 1.90743 1.72574 1.30060 1.52038 1.45595 1.04714 1.10799 1.73121 1.21763 0.92724 0.86133 0.99683 1.20019 0.89637 0.91233 0.89170 1.42446 1.78941 1.12983 1.00425 1.19193 1.30083 1.00102 0.84327 0.92344 1.25069 1.02925 0.97474 0.99691 1.69733 1.49477 1.10368 1.31157 0.85555 0.76436 0.77106 0.83573 1.20662 1.22441 1.22852 1.21667 0.96983 1.00587 0.95318 1.21431 0.94394 0.97721 1.01349 1.21449 0.99282 0.97051 0.96741 1.21309 0.95374 0.99617 0.98026 1.21781 0.95950 0.97160 1.00431 0.92067 0.91517 0.86946 0.77650 0.80135 0.82788 0.75731 0.95101 0.91646 0.78741 0.94431 0.90019 0.91911 0.93585 0.90624 0.92197 0.90890 0.93920 0.92554 0.94403 0.91030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.76 10.38 113.37 1.18 1.94 16 2 O -0.30 -10.33 8.58 -66.39 -0.57 -10.90 16 3 C 0.35 11.22 7.51 85.13 0.64 11.86 16 4 N -0.56 -14.36 9.21 -308.00 -2.84 -17.20 16 5 C 0.17 3.01 11.17 84.71 0.95 3.96 16 6 C -0.21 -3.72 10.09 22.32 0.23 -3.50 16 7 C -0.01 -0.20 9.64 22.72 0.22 0.02 16 8 C -0.23 -7.61 5.90 -19.91 -0.12 -7.73 16 9 C 0.55 21.34 7.77 86.69 0.67 22.01 16 10 O -0.57 -26.04 15.19 16.80 0.26 -25.78 16 11 N -0.69 -24.60 5.05 -466.29 -2.35 -26.95 16 12 C 0.12 4.53 4.37 86.38 0.38 4.91 16 13 C 0.19 6.55 0.41 3.61 0.00 6.55 16 14 N -0.71 -30.21 3.40 -303.34 -1.03 -31.24 16 15 C -0.20 -10.37 8.70 84.03 0.73 -9.64 16 16 H 0.06 3.08 6.77 -2.91 -0.02 3.06 16 17 C -0.06 -3.17 5.50 84.86 0.47 -2.70 16 18 N -0.96 -53.81 13.07 21.65 0.28 -53.53 16 19 Si 0.94 45.85 29.55 68.60 2.03 47.88 16 20 H -0.28 -13.53 7.11 99.48 0.71 -12.82 16 21 H -0.30 -14.54 7.11 99.48 0.71 -13.83 16 22 H -0.30 -14.88 7.11 99.48 0.71 -14.17 16 23 C -0.11 -2.97 4.65 30.60 0.14 -2.83 16 24 C -0.11 -3.01 5.75 30.59 0.18 -2.84 16 25 C -0.11 -2.83 5.92 30.59 0.18 -2.65 16 26 C -0.11 -3.43 5.77 30.61 0.18 -3.25 16 27 C -0.11 -3.81 4.52 30.61 0.14 -3.67 16 28 H 0.06 1.34 8.10 -2.39 -0.02 1.32 16 29 H 0.07 1.38 8.10 -2.39 -0.02 1.36 16 30 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 31 H 0.21 1.83 8.06 -2.91 -0.02 1.81 16 32 H 0.18 1.91 8.06 -2.91 -0.02 1.88 16 33 H 0.15 3.52 6.52 -2.91 -0.02 3.50 16 34 H 0.41 13.38 5.49 -92.71 -0.51 12.87 16 35 H 0.03 1.33 7.50 -2.39 -0.02 1.32 16 36 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 37 H 0.38 17.23 6.63 -92.71 -0.61 16.61 16 38 H 0.25 13.79 8.31 -92.71 -0.77 13.02 16 39 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 40 H 0.06 1.66 7.28 -2.39 -0.02 1.64 16 41 H 0.05 1.53 6.92 -2.39 -0.02 1.51 16 42 H 0.08 1.68 8.14 -2.38 -0.02 1.66 16 43 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 44 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 45 H 0.04 1.74 7.60 -2.38 -0.02 1.72 16 46 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 47 H 0.04 1.45 7.23 -2.39 -0.02 1.43 16 48 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 Total: -1.00 -70.17 381.12 1.79 -68.38 By element: Atomic # 1 Polarization: 37.05 SS G_CDS: -0.14 Total: 36.91 kcal Atomic # 6 Polarization: 6.29 SS G_CDS: 6.15 Total: 12.44 kcal Atomic # 7 Polarization: -122.98 SS G_CDS: -5.94 Total: -128.92 kcal Atomic # 8 Polarization: -36.37 SS G_CDS: -0.31 Total: -36.69 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.88 kcal Total: -70.17 1.79 -68.38 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115706855.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.766 kcal (2) G-P(sol) polarization free energy of solvation -70.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds