Wall clock time and date at job start Tue Mar 31 2020 17:31:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35662 * 116.99692 * 2 1 4 4 C 1.39288 * 119.61251 * 180.02562 * 3 2 1 5 5 C 1.38332 * 119.30108 * 180.02562 * 4 3 2 6 6 C 1.38780 * 118.56493 * 359.97438 * 5 4 3 7 7 C 1.39126 * 119.18532 * 359.97438 * 6 5 4 8 8 C 1.48148 * 119.69229 * 180.02562 * 7 6 5 9 9 O 1.21520 * 119.99993 * 359.97438 * 8 7 6 10 10 N 1.34772 * 120.00444 * 179.97438 * 8 7 6 11 11 C 1.46501 * 120.00156 * 179.97438 * 10 8 7 12 12 C 1.53004 * 109.46900 * 176.25749 * 11 10 8 13 13 N 1.46497 * 109.47270 * 54.66799 * 12 11 10 14 14 C 1.36945 * 120.00052 * 63.15417 * 13 12 11 15 15 H 1.07998 * 119.99392 * 353.79935 * 14 13 12 16 16 C 1.38806 * 120.00035 * 173.51657 * 14 13 12 17 17 N 1.31618 * 120.00097 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 119.99903 * 0.02562 * 16 14 13 19 19 H 1.48504 * 109.47173 * 90.00294 * 18 16 14 20 20 H 1.48505 * 109.46814 * 209.99287 * 18 16 14 21 21 H 1.48499 * 109.47329 * 329.99737 * 18 16 14 22 22 C 1.53006 * 109.47128 * 174.66557 * 12 11 10 23 23 C 1.52998 * 109.47362 * 179.97438 * 22 12 11 24 24 C 1.53000 * 109.47416 * 300.00573 * 23 22 12 25 25 C 1.53002 * 109.46994 * 59.99451 * 24 23 22 26 26 C 1.52997 * 109.47692 * 300.00179 * 25 24 23 27 27 N 1.31899 * 119.61963 * 0.28900 * 3 2 1 28 28 H 1.09000 * 109.47486 * 60.00386 * 1 2 3 29 29 H 1.09001 * 109.47124 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47498 * 299.99896 * 1 2 3 31 31 H 1.08001 * 120.34969 * 0.03737 * 4 3 2 32 32 H 1.08009 * 120.72030 * 179.97438 * 5 4 3 33 33 H 1.07998 * 120.40910 * 180.02562 * 6 5 4 34 34 H 0.96999 * 119.99947 * 0.02562 * 10 8 7 35 35 H 1.08998 * 109.47219 * 56.26141 * 11 10 8 36 36 H 1.08999 * 109.47630 * 296.25767 * 11 10 8 37 37 H 0.96998 * 120.00293 * 243.15518 * 13 12 11 38 38 H 0.96997 * 120.00319 * 180.02562 * 17 16 14 39 39 H 1.08997 * 109.47047 * 300.00462 * 22 12 11 40 40 H 1.09007 * 109.46775 * 60.00026 * 22 12 11 41 41 H 1.08999 * 109.47077 * 179.97438 * 23 22 12 42 42 H 1.09009 * 109.46505 * 60.00152 * 23 22 12 43 43 H 1.08998 * 109.47074 * 299.99796 * 24 23 22 44 44 H 1.08994 * 109.47258 * 179.97438 * 24 23 22 45 45 H 1.09007 * 109.46791 * 180.02562 * 25 24 23 46 46 H 1.08994 * 109.47251 * 60.00647 * 25 24 23 47 47 H 1.09009 * 109.46669 * 300.00400 * 26 25 24 48 48 H 1.08999 * 109.47281 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2088 0.0000 4 6 3.4363 1.2724 -0.0005 5 6 4.0575 2.5083 0.0000 6 6 3.2665 3.6486 0.0005 7 6 1.8818 3.5137 0.0000 8 6 1.0266 4.7235 -0.0001 9 8 1.5352 5.8271 0.0009 10 7 -0.3155 4.6001 -0.0011 11 6 -1.1611 5.7964 -0.0006 12 6 -2.6308 5.3821 -0.0962 13 7 -2.9431 4.4380 0.9796 14 6 -2.8521 4.8352 2.2870 15 1 -2.4550 5.8101 2.5287 16 6 -3.2755 3.9873 3.3011 17 7 -3.1885 4.3692 4.5576 18 14 -3.9689 2.3040 2.8824 19 1 -2.8670 1.3090 2.8494 20 1 -4.9626 1.9079 3.9125 21 1 -4.6282 2.3569 1.5529 22 6 -3.5196 6.6203 0.0380 23 6 -4.9893 6.2061 -0.0582 24 6 -5.2439 5.5399 -1.4118 25 6 -4.3551 4.3017 -1.5459 26 6 -2.8854 4.7158 -1.4498 27 7 1.3191 2.3102 0.0058 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 4.0239 0.3662 -0.0016 32 1 5.1349 2.5843 0.0000 33 1 3.7202 4.6287 0.0005 34 1 -0.7215 3.7192 -0.0015 35 1 -0.9041 6.4234 -0.8544 36 1 -1.0002 6.3547 0.9216 37 1 -3.2142 3.5316 0.7659 38 1 -3.4841 3.7766 5.2663 39 1 -3.3378 7.0952 1.0022 40 1 -3.2872 7.3228 -0.7625 41 1 -5.6224 7.0882 0.0379 42 1 -5.2218 5.5035 0.7421 43 1 -5.0113 6.2424 -2.2120 44 1 -6.2908 5.2444 -1.4801 45 1 -4.5362 3.8273 -2.5105 46 1 -4.5877 3.5991 -0.7458 47 1 -2.6529 5.4185 -2.2501 48 1 -2.2523 3.8338 -1.5458 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001115801868.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:36 Heat of formation + Delta-G solvation = -31.618354 kcal Electronic energy + Delta-G solvation = -30155.025962 eV Core-core repulsion = 26210.345726 eV Total energy + Delta-G solvation = -3944.680236 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.84023 -39.51354 -38.59773 -37.53525 -34.58361 -33.41587 -32.65916 -31.29773 -30.83824 -30.34467 -29.17416 -27.43217 -25.90449 -23.96530 -23.47909 -22.93241 -22.20192 -20.82099 -20.18991 -18.70007 -18.15094 -17.77559 -17.60824 -16.11451 -16.10647 -15.99610 -15.46163 -15.06612 -14.83733 -14.44889 -14.35283 -14.19587 -13.86121 -13.61062 -13.49296 -13.29297 -13.06379 -12.62251 -12.33206 -12.23827 -12.15980 -11.95180 -11.81671 -11.66920 -11.28056 -11.19287 -10.99175 -10.84702 -10.61725 -10.33195 -10.28799 -10.08106 -10.06273 -9.87526 -9.66464 -9.49584 -9.36987 -8.90526 -8.69463 -8.44153 -7.31726 -5.78541 -3.15450 0.64425 1.17190 2.94553 2.97852 3.31281 3.32933 3.40868 3.44836 3.91648 4.11851 4.55106 4.78173 4.90139 4.93892 5.02016 5.13737 5.15512 5.19001 5.26363 5.33313 5.34632 5.40738 5.52401 5.62077 5.67937 5.71955 5.83137 5.86618 5.92468 6.00231 6.01532 6.06109 6.11527 6.18359 6.21782 6.33543 6.43902 6.49362 6.60646 6.70179 6.72123 6.91435 6.97996 7.08283 7.10076 7.56723 7.96440 8.01661 8.39786 8.55432 9.16899 9.88758 10.07948 11.39548 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.010475 B = 0.004571 C = 0.004026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2672.342925 B = 6124.748202 C = 6953.563978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.308 6.308 3 C 0.320 3.680 4 C -0.173 4.173 5 C -0.049 4.049 6 C -0.152 4.152 7 C 0.130 3.870 8 C 0.562 3.438 9 O -0.543 6.543 10 N -0.678 5.678 11 C 0.113 3.887 12 C 0.197 3.803 13 N -0.735 5.735 14 C -0.234 4.234 15 H 0.091 0.909 16 C 0.009 3.991 17 N -0.931 5.931 18 Si 0.875 3.125 19 H -0.286 1.286 20 H -0.294 1.294 21 H -0.275 1.275 22 C -0.113 4.113 23 C -0.110 4.110 24 C -0.114 4.114 25 C -0.116 4.116 26 C -0.118 4.118 27 N -0.513 5.513 28 H 0.060 0.940 29 H 0.096 0.904 30 H 0.065 0.935 31 H 0.144 0.856 32 H 0.148 0.852 33 H 0.150 0.850 34 H 0.410 0.590 35 H 0.059 0.941 36 H 0.072 0.928 37 H 0.361 0.639 38 H 0.258 0.742 39 H 0.071 0.929 40 H 0.047 0.953 41 H 0.048 0.952 42 H 0.079 0.921 43 H 0.052 0.948 44 H 0.051 0.949 45 H 0.051 0.949 46 H 0.066 0.934 47 H 0.064 0.936 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.377 -5.134 -14.079 16.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.215 6.215 3 C 0.138 3.862 4 C -0.194 4.194 5 C -0.074 4.074 6 C -0.174 4.174 7 C -0.007 4.007 8 C 0.346 3.654 9 O -0.422 6.422 10 N -0.327 5.327 11 C -0.013 4.013 12 C 0.106 3.894 13 N -0.378 5.378 14 C -0.364 4.364 15 H 0.109 0.891 16 C -0.187 4.187 17 N -0.579 5.579 18 Si 0.706 3.294 19 H -0.213 1.213 20 H -0.220 1.220 21 H -0.201 1.201 22 C -0.153 4.153 23 C -0.147 4.147 24 C -0.152 4.152 25 C -0.154 4.154 26 C -0.156 4.156 27 N -0.240 5.240 28 H 0.079 0.921 29 H 0.115 0.885 30 H 0.084 0.916 31 H 0.162 0.838 32 H 0.165 0.835 33 H 0.168 0.832 34 H 0.247 0.753 35 H 0.077 0.923 36 H 0.091 0.909 37 H 0.194 0.806 38 H 0.068 0.932 39 H 0.089 0.911 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.098 0.902 43 H 0.071 0.929 44 H 0.070 0.930 45 H 0.070 0.930 46 H 0.085 0.915 47 H 0.083 0.917 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 6.873 -4.530 -13.844 16.106 hybrid contribution -0.091 -1.651 0.071 1.655 sum 6.781 -6.181 -13.772 16.549 Atomic orbital electron populations 1.22948 0.76705 1.03194 1.03138 1.86217 1.23290 1.24164 1.87829 1.19786 0.89387 0.84540 0.92449 1.21245 0.91951 0.99797 1.06416 1.21414 1.00755 0.90857 0.94410 1.21984 0.93122 1.00779 1.01481 1.20963 0.92306 0.90345 0.97127 1.17799 0.82713 0.87081 0.77814 1.90755 1.74149 1.25770 1.51486 1.45631 1.04775 1.11500 1.70757 1.21966 0.91304 0.86522 1.01537 1.19779 0.90711 0.91038 0.87880 1.42798 1.82589 1.10022 1.02396 1.18921 1.34524 1.02377 0.80532 0.89103 1.24638 1.01100 0.97814 0.95135 1.69687 1.53326 1.36580 0.98278 0.86706 0.79048 0.86276 0.77408 1.21332 1.22016 1.20107 1.21760 0.95178 0.96922 1.01447 1.21370 0.96033 1.00038 0.97276 1.21495 0.98542 0.97028 0.98089 1.21490 0.94952 0.98118 1.00827 1.21751 0.96472 1.00292 0.97094 1.67204 1.40996 0.98258 1.17499 0.92097 0.88525 0.91580 0.83795 0.83467 0.83188 0.75328 0.92315 0.90936 0.80585 0.93171 0.91058 0.93403 0.93352 0.90236 0.92877 0.92976 0.93035 0.91537 0.91713 0.92417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.43 10.38 101.05 1.05 1.47 16 2 O -0.31 -4.11 10.48 -18.69 -0.20 -4.31 16 3 C 0.32 4.46 7.49 -17.13 -0.13 4.33 16 4 C -0.17 -1.91 10.05 -39.16 -0.39 -2.30 16 5 C -0.05 -0.50 10.16 -39.35 -0.40 -0.90 16 6 C -0.15 -1.99 9.63 -39.05 -0.38 -2.36 16 7 C 0.13 2.07 6.75 -83.02 -0.56 1.51 16 8 C 0.56 10.25 7.81 -12.19 -0.10 10.16 16 9 O -0.54 -10.98 16.32 5.35 0.09 -10.90 16 10 N -0.68 -12.11 5.08 -61.15 -0.31 -12.42 16 11 C 0.11 2.01 4.37 -4.04 -0.02 2.00 16 12 C 0.20 3.39 0.41 -131.82 -0.05 3.33 16 13 N -0.73 -15.18 3.19 -47.23 -0.15 -15.33 16 14 C -0.23 -5.97 9.18 -15.06 -0.14 -6.11 16 15 H 0.09 2.57 7.01 -52.49 -0.37 2.20 16 16 C 0.01 0.25 5.50 -17.43 -0.10 0.15 16 17 N -0.93 -28.33 13.97 55.49 0.78 -27.55 16 18 Si 0.87 20.93 27.67 -169.99 -4.70 16.23 16 19 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 20 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 21 H -0.28 -6.09 6.62 56.52 0.37 -5.71 16 22 C -0.11 -1.90 4.51 -26.73 -0.12 -2.02 16 23 C -0.11 -1.77 5.77 -26.73 -0.15 -1.93 16 24 C -0.11 -1.57 5.92 -26.73 -0.16 -1.73 16 25 C -0.12 -1.63 5.75 -26.73 -0.15 -1.79 16 26 C -0.12 -1.70 4.64 -26.73 -0.12 -1.83 16 27 N -0.51 -8.03 8.39 -9.88 -0.08 -8.11 16 28 H 0.06 0.70 8.11 -51.93 -0.42 0.28 16 29 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.07 0.93 8.10 -51.93 -0.42 0.51 16 31 H 0.14 1.20 8.06 -52.49 -0.42 0.78 16 32 H 0.15 0.94 8.06 -52.48 -0.42 0.52 16 33 H 0.15 1.84 7.63 -52.49 -0.40 1.44 16 34 H 0.41 7.26 6.72 -40.82 -0.27 6.99 16 35 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.07 1.50 7.51 -51.93 -0.39 1.11 16 37 H 0.36 7.46 4.58 -40.82 -0.19 7.27 16 38 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 39 H 0.07 1.36 7.23 -51.93 -0.38 0.99 16 40 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.08 1.54 7.61 -51.92 -0.39 1.14 16 43 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 46 H 0.07 1.07 6.93 -51.93 -0.36 0.71 16 47 H 0.06 0.85 8.14 -51.92 -0.42 0.42 16 48 H 0.06 0.82 7.29 -51.93 -0.38 0.44 16 LS Contribution 382.51 15.07 5.76 5.76 Total: -1.00 -31.26 382.51 -8.10 -39.36 By element: Atomic # 1 Polarization: 22.63 SS G_CDS: -7.36 Total: 15.27 kcal Atomic # 6 Polarization: 3.91 SS G_CDS: -1.92 Total: 1.99 kcal Atomic # 7 Polarization: -63.64 SS G_CDS: 0.23 Total: -63.41 kcal Atomic # 8 Polarization: -15.10 SS G_CDS: -0.11 Total: -15.21 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -4.70 Total: 16.23 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -31.26 -8.10 -39.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115801868.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.741 kcal (2) G-P(sol) polarization free energy of solvation -31.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds