Wall clock time and date at job start Tue Mar 31 2020 17:31:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35662 * 116.99692 * 2 1 4 4 C 1.39288 * 119.61251 * 180.02562 * 3 2 1 5 5 C 1.38332 * 119.30108 * 180.02562 * 4 3 2 6 6 C 1.38780 * 118.56493 * 359.97438 * 5 4 3 7 7 C 1.39126 * 119.18532 * 359.97438 * 6 5 4 8 8 C 1.48148 * 119.69229 * 180.02562 * 7 6 5 9 9 O 1.21520 * 119.99993 * 359.97438 * 8 7 6 10 10 N 1.34772 * 120.00444 * 179.97438 * 8 7 6 11 11 C 1.46501 * 120.00156 * 179.97438 * 10 8 7 12 12 C 1.53004 * 109.46900 * 176.25749 * 11 10 8 13 13 N 1.46497 * 109.47270 * 54.66799 * 12 11 10 14 14 C 1.36945 * 120.00052 * 63.15417 * 13 12 11 15 15 H 1.07998 * 119.99392 * 353.79935 * 14 13 12 16 16 C 1.38806 * 120.00035 * 173.51657 * 14 13 12 17 17 N 1.31618 * 120.00097 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 119.99903 * 0.02562 * 16 14 13 19 19 H 1.48504 * 109.47173 * 90.00294 * 18 16 14 20 20 H 1.48505 * 109.46814 * 209.99287 * 18 16 14 21 21 H 1.48499 * 109.47329 * 329.99737 * 18 16 14 22 22 C 1.53006 * 109.47128 * 174.66557 * 12 11 10 23 23 C 1.52998 * 109.47362 * 179.97438 * 22 12 11 24 24 C 1.53000 * 109.47416 * 300.00573 * 23 22 12 25 25 C 1.53002 * 109.46994 * 59.99451 * 24 23 22 26 26 C 1.52997 * 109.47692 * 300.00179 * 25 24 23 27 27 N 1.31899 * 119.61963 * 0.28900 * 3 2 1 28 28 H 1.09000 * 109.47486 * 60.00386 * 1 2 3 29 29 H 1.09001 * 109.47124 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47498 * 299.99896 * 1 2 3 31 31 H 1.08001 * 120.34969 * 0.03737 * 4 3 2 32 32 H 1.08009 * 120.72030 * 179.97438 * 5 4 3 33 33 H 1.07998 * 120.40910 * 180.02562 * 6 5 4 34 34 H 0.96999 * 119.99947 * 0.02562 * 10 8 7 35 35 H 1.08998 * 109.47219 * 56.26141 * 11 10 8 36 36 H 1.08999 * 109.47630 * 296.25767 * 11 10 8 37 37 H 0.96998 * 120.00293 * 243.15518 * 13 12 11 38 38 H 0.96997 * 120.00319 * 180.02562 * 17 16 14 39 39 H 1.08997 * 109.47047 * 300.00462 * 22 12 11 40 40 H 1.09007 * 109.46775 * 60.00026 * 22 12 11 41 41 H 1.08999 * 109.47077 * 179.97438 * 23 22 12 42 42 H 1.09009 * 109.46505 * 60.00152 * 23 22 12 43 43 H 1.08998 * 109.47074 * 299.99796 * 24 23 22 44 44 H 1.08994 * 109.47258 * 179.97438 * 24 23 22 45 45 H 1.09007 * 109.46791 * 180.02562 * 25 24 23 46 46 H 1.08994 * 109.47251 * 60.00647 * 25 24 23 47 47 H 1.09009 * 109.46669 * 300.00400 * 26 25 24 48 48 H 1.08999 * 109.47281 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2088 0.0000 4 6 3.4363 1.2724 -0.0005 5 6 4.0575 2.5083 0.0000 6 6 3.2665 3.6486 0.0005 7 6 1.8818 3.5137 0.0000 8 6 1.0266 4.7235 -0.0001 9 8 1.5352 5.8271 0.0009 10 7 -0.3155 4.6001 -0.0011 11 6 -1.1611 5.7964 -0.0006 12 6 -2.6308 5.3821 -0.0962 13 7 -2.9431 4.4380 0.9796 14 6 -2.8521 4.8352 2.2870 15 1 -2.4550 5.8101 2.5287 16 6 -3.2755 3.9873 3.3011 17 7 -3.1885 4.3692 4.5576 18 14 -3.9689 2.3040 2.8824 19 1 -2.8670 1.3090 2.8494 20 1 -4.9626 1.9079 3.9125 21 1 -4.6282 2.3569 1.5529 22 6 -3.5196 6.6203 0.0380 23 6 -4.9893 6.2061 -0.0582 24 6 -5.2439 5.5399 -1.4118 25 6 -4.3551 4.3017 -1.5459 26 6 -2.8854 4.7158 -1.4498 27 7 1.3191 2.3102 0.0058 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 4.0239 0.3662 -0.0016 32 1 5.1349 2.5843 0.0000 33 1 3.7202 4.6287 0.0005 34 1 -0.7215 3.7192 -0.0015 35 1 -0.9041 6.4234 -0.8544 36 1 -1.0002 6.3547 0.9216 37 1 -3.2142 3.5316 0.7659 38 1 -3.4841 3.7766 5.2663 39 1 -3.3378 7.0952 1.0022 40 1 -3.2872 7.3228 -0.7625 41 1 -5.6224 7.0882 0.0379 42 1 -5.2218 5.5035 0.7421 43 1 -5.0113 6.2424 -2.2120 44 1 -6.2908 5.2444 -1.4801 45 1 -4.5362 3.8273 -2.5105 46 1 -4.5877 3.5991 -0.7458 47 1 -2.6529 5.4185 -2.2501 48 1 -2.2523 3.8338 -1.5458 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115801868.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:35 Heat of formation + Delta-G solvation = -54.035030 kcal Electronic energy + Delta-G solvation = -30155.998022 eV Core-core repulsion = 26210.345726 eV Total energy + Delta-G solvation = -3945.652296 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.92245 -40.86749 -39.91200 -38.62111 -36.00493 -35.17310 -33.78368 -32.98400 -31.93459 -31.61377 -30.80264 -28.42829 -27.17181 -25.42828 -25.10485 -23.91774 -23.48986 -22.05363 -21.57308 -19.97386 -19.75386 -19.46059 -18.76980 -17.17326 -17.13626 -17.02063 -16.87720 -16.52906 -16.33242 -16.12912 -15.73683 -15.21035 -15.16721 -14.94381 -14.85576 -14.43343 -14.28237 -14.21050 -13.93226 -13.59147 -13.35663 -13.23020 -12.97056 -12.87149 -12.73750 -12.69318 -12.39453 -12.21555 -12.12514 -11.92293 -11.70201 -11.62622 -11.34224 -11.17239 -11.02685 -10.85941 -10.76591 -10.64363 -10.04765 -9.61491 -9.26287 -7.95368 -5.28180 -0.41515 0.22525 1.35491 1.38991 1.46420 1.68471 2.02163 2.15794 2.51424 2.78587 2.99124 3.35154 3.52429 3.82706 3.85811 3.91540 3.94301 4.01835 4.04353 4.24113 4.33951 4.37356 4.39814 4.41575 4.47512 4.61158 4.67930 4.69653 4.74281 4.75428 4.84889 4.91375 4.93787 5.01008 5.09307 5.14396 5.20250 5.33336 5.37243 5.40796 5.46020 5.50192 5.60543 5.72869 5.87783 6.08348 6.27932 6.40180 6.69332 7.13120 7.14758 7.88434 8.08465 9.26617 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.010475 B = 0.004571 C = 0.004026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2672.342925 B = 6124.748202 C = 6953.563978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.311 6.311 3 C 0.297 3.703 4 C -0.157 4.157 5 C -0.033 4.033 6 C -0.151 4.151 7 C 0.095 3.905 8 C 0.557 3.443 9 O -0.573 6.573 10 N -0.679 5.679 11 C 0.118 3.882 12 C 0.194 3.806 13 N -0.730 5.730 14 C -0.195 4.195 15 H 0.052 0.948 16 C -0.065 4.065 17 N -0.989 5.989 18 Si 0.941 3.059 19 H -0.283 1.283 20 H -0.308 1.308 21 H -0.244 1.244 22 C -0.112 4.112 23 C -0.108 4.108 24 C -0.108 4.108 25 C -0.115 4.115 26 C -0.111 4.111 27 N -0.534 5.534 28 H 0.063 0.937 29 H 0.126 0.874 30 H 0.039 0.961 31 H 0.179 0.821 32 H 0.195 0.805 33 H 0.154 0.846 34 H 0.411 0.589 35 H 0.077 0.923 36 H 0.032 0.968 37 H 0.365 0.635 38 H 0.251 0.749 39 H 0.033 0.967 40 H 0.077 0.923 41 H 0.058 0.942 42 H 0.041 0.959 43 H 0.076 0.924 44 H 0.064 0.936 45 H 0.081 0.919 46 H 0.044 0.956 47 H 0.089 0.911 48 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.335 -7.106 -17.583 20.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.218 6.218 3 C 0.115 3.885 4 C -0.178 4.178 5 C -0.058 4.058 6 C -0.172 4.172 7 C -0.041 4.041 8 C 0.343 3.657 9 O -0.453 6.453 10 N -0.327 5.327 11 C -0.007 4.007 12 C 0.104 3.896 13 N -0.373 5.373 14 C -0.327 4.327 15 H 0.070 0.930 16 C -0.255 4.255 17 N -0.640 5.640 18 Si 0.770 3.230 19 H -0.209 1.209 20 H -0.235 1.235 21 H -0.168 1.168 22 C -0.151 4.151 23 C -0.146 4.146 24 C -0.146 4.146 25 C -0.152 4.152 26 C -0.149 4.149 27 N -0.261 5.261 28 H 0.081 0.919 29 H 0.144 0.856 30 H 0.058 0.942 31 H 0.196 0.804 32 H 0.212 0.788 33 H 0.171 0.829 34 H 0.248 0.752 35 H 0.095 0.905 36 H 0.050 0.950 37 H 0.199 0.801 38 H 0.060 0.940 39 H 0.052 0.948 40 H 0.096 0.904 41 H 0.077 0.923 42 H 0.060 0.940 43 H 0.095 0.905 44 H 0.082 0.918 45 H 0.100 0.900 46 H 0.062 0.938 47 H 0.108 0.892 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 7.827 -6.496 -17.425 20.177 hybrid contribution -0.260 -0.949 1.128 1.497 sum 7.567 -7.445 -16.297 19.450 Atomic orbital electron populations 1.23032 0.76366 1.04743 1.01914 1.86220 1.23699 1.23908 1.87963 1.20252 0.90701 0.84200 0.93341 1.21736 0.90859 1.01529 1.03654 1.21918 1.02686 0.89168 0.92024 1.22204 0.92183 1.02300 1.00537 1.20703 0.93071 0.89595 1.00699 1.18283 0.82848 0.87821 0.76792 1.90717 1.74601 1.27126 1.52885 1.45641 1.04993 1.11259 1.70846 1.21858 0.91942 0.86721 1.00225 1.20026 0.89990 0.90914 0.88644 1.42708 1.82264 1.10933 1.01387 1.18729 1.31108 1.00129 0.82700 0.93028 1.25366 1.03065 1.02166 0.94913 1.69890 1.56312 1.38230 0.99589 0.85614 0.78095 0.81259 0.78071 1.20916 1.23540 1.16801 1.21733 0.95853 0.97001 1.00540 1.21330 0.95374 0.99844 0.98040 1.21470 0.99311 0.97139 0.96631 1.21496 0.94210 0.97909 1.01625 1.21723 0.97273 1.00763 0.95143 1.67024 1.42111 0.98622 1.18346 0.91852 0.85620 0.94228 0.80384 0.78755 0.82850 0.75243 0.90516 0.94998 0.80109 0.93968 0.94799 0.90425 0.92340 0.94011 0.90502 0.91771 0.90014 0.93750 0.89235 0.91968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.79 10.38 113.37 1.18 1.96 16 2 O -0.31 -7.76 10.48 -89.79 -0.94 -8.70 16 3 C 0.30 7.78 7.49 84.94 0.64 8.42 16 4 C -0.16 -2.92 10.05 22.54 0.23 -2.69 16 5 C -0.03 -0.55 10.16 22.42 0.23 -0.32 16 6 C -0.15 -3.71 9.63 22.61 0.22 -3.50 16 7 C 0.09 3.03 6.75 41.84 0.28 3.31 16 8 C 0.56 20.88 7.81 86.88 0.68 21.56 16 9 O -0.57 -23.92 16.32 -3.78 -0.06 -23.98 16 10 N -0.68 -24.87 5.08 -465.68 -2.36 -27.23 16 11 C 0.12 4.36 4.37 86.38 0.38 4.74 16 12 C 0.19 6.64 0.41 3.61 0.00 6.64 16 13 N -0.73 -30.66 3.19 -303.34 -0.97 -31.63 16 14 C -0.20 -10.51 9.18 84.03 0.77 -9.74 16 15 H 0.05 3.17 7.01 -2.91 -0.02 3.14 16 16 C -0.06 -3.73 5.50 84.86 0.47 -3.26 16 17 N -0.99 -63.62 13.97 21.65 0.30 -63.32 16 18 Si 0.94 44.49 27.67 68.60 1.90 46.39 16 19 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 20 H -0.31 -15.25 7.11 99.48 0.71 -14.54 16 21 H -0.24 -10.13 6.62 99.48 0.66 -9.47 16 22 C -0.11 -3.74 4.51 30.60 0.14 -3.60 16 23 C -0.11 -3.40 5.77 30.59 0.18 -3.23 16 24 C -0.11 -2.61 5.92 30.59 0.18 -2.43 16 25 C -0.11 -2.84 5.75 30.59 0.18 -2.66 16 26 C -0.11 -2.91 4.64 30.59 0.14 -2.77 16 27 N -0.53 -16.53 8.39 -298.21 -2.50 -19.03 16 28 H 0.06 1.39 8.11 -2.39 -0.02 1.37 16 29 H 0.13 2.06 8.14 -2.39 -0.02 2.04 16 30 H 0.04 1.11 8.10 -2.39 -0.02 1.09 16 31 H 0.18 2.08 8.06 -2.91 -0.02 2.05 16 32 H 0.20 1.39 8.06 -2.91 -0.02 1.36 16 33 H 0.15 3.61 7.63 -2.91 -0.02 3.59 16 34 H 0.41 14.78 6.72 -92.71 -0.62 14.16 16 35 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 36 H 0.03 1.42 7.51 -2.39 -0.02 1.40 16 37 H 0.36 14.90 4.58 -92.71 -0.42 14.48 16 38 H 0.25 15.66 8.31 -92.71 -0.77 14.89 16 39 H 0.03 1.36 7.23 -2.39 -0.02 1.35 16 40 H 0.08 2.14 8.14 -2.38 -0.02 2.12 16 41 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 42 H 0.04 1.62 7.61 -2.38 -0.02 1.60 16 43 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 44 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 45 H 0.08 1.59 8.14 -2.38 -0.02 1.57 16 46 H 0.04 1.30 6.93 -2.39 -0.02 1.28 16 47 H 0.09 1.97 8.14 -2.38 -0.02 1.95 16 48 H 0.06 1.60 7.29 -2.39 -0.02 1.59 16 Total: -1.00 -74.41 382.51 1.13 -73.29 By element: Atomic # 1 Polarization: 41.90 SS G_CDS: -0.12 Total: 41.78 kcal Atomic # 6 Polarization: 6.55 SS G_CDS: 5.88 Total: 12.43 kcal Atomic # 7 Polarization: -135.68 SS G_CDS: -5.53 Total: -141.21 kcal Atomic # 8 Polarization: -31.68 SS G_CDS: -1.00 Total: -32.68 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 1.90 Total: 46.39 kcal Total: -74.41 1.13 -73.29 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115801868.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.254 kcal (2) G-P(sol) polarization free energy of solvation -74.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds