Wall clock time and date at job start Tue Mar 31 2020 17:39:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35646 * 116.99742 * 2 1 4 4 C 1.39353 * 120.54393 * 0.26779 * 3 2 1 5 5 C 1.38298 * 118.43973 * 180.26205 * 4 3 2 6 6 C 1.38769 * 119.44541 * 359.73345 * 5 4 3 7 7 N 1.31369 * 121.06611 * 0.02562 * 6 5 4 8 8 C 1.32859 * 121.69945 * 359.97438 * 7 6 5 9 9 C 1.47829 * 119.78311 * 180.02562 * 8 7 6 10 10 O 1.21561 * 120.00128 * 180.02562 * 9 8 7 11 11 N 1.34772 * 120.00376 * 359.97438 * 9 8 7 12 12 C 1.46501 * 120.00156 * 179.97438 * 11 9 8 13 13 C 1.53002 * 109.47074 * 176.26094 * 12 11 9 14 14 N 1.46499 * 109.47079 * 54.66410 * 13 12 11 15 15 C 1.36935 * 120.00144 * 63.15979 * 14 13 12 16 16 H 1.08005 * 119.99749 * 353.79648 * 15 14 13 17 17 C 1.38807 * 120.00197 * 173.52152 * 15 14 13 18 18 N 1.31618 * 119.99771 * 179.97438 * 17 15 14 19 19 Si 1.86794 * 120.00076 * 359.97438 * 17 15 14 20 20 H 1.48506 * 109.47254 * 89.99850 * 19 17 15 21 21 H 1.48504 * 109.47485 * 209.99822 * 19 17 15 22 22 H 1.48503 * 109.47262 * 330.00045 * 19 17 15 23 23 C 1.52994 * 109.47245 * 174.66793 * 13 12 11 24 24 C 1.53002 * 109.47245 * 180.02562 * 23 13 12 25 25 C 1.53001 * 109.47287 * 299.99819 * 24 23 13 26 26 C 1.52994 * 109.46830 * 59.99927 * 25 24 23 27 27 C 1.53001 * 109.47287 * 294.66612 * 13 12 11 28 28 H 1.08998 * 109.47081 * 60.00388 * 1 2 3 29 29 H 1.08998 * 109.47074 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47152 * 299.99929 * 1 2 3 31 31 H 1.08002 * 120.77374 * 359.97438 * 4 3 2 32 32 H 1.07999 * 120.27626 * 179.70705 * 5 4 3 33 33 H 1.07994 * 119.46274 * 180.02562 * 6 5 4 34 34 H 0.96999 * 119.99947 * 0.02562 * 11 9 8 35 35 H 1.09002 * 109.46923 * 56.26533 * 12 11 9 36 36 H 1.08999 * 109.47630 * 296.25767 * 12 11 9 37 37 H 0.96997 * 120.00157 * 243.15029 * 14 13 12 38 38 H 0.97007 * 119.99739 * 180.02562 * 18 17 15 39 39 H 1.09007 * 109.46966 * 299.99920 * 23 13 12 40 40 H 1.08996 * 109.47701 * 59.99762 * 23 13 12 41 41 H 1.08999 * 109.47048 * 179.97438 * 24 23 13 42 42 H 1.08998 * 109.47285 * 60.00016 * 24 23 13 43 43 H 1.09003 * 109.46436 * 300.00259 * 25 24 23 44 44 H 1.08993 * 109.47035 * 179.97438 * 25 24 23 45 45 H 1.09007 * 109.46966 * 180.02562 * 26 25 24 46 46 H 1.08996 * 109.47701 * 60.00337 * 26 25 24 47 47 H 1.08998 * 109.47119 * 300.00299 * 27 13 12 48 48 H 1.08999 * 109.47147 * 59.99975 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2086 0.0000 4 6 1.2969 2.3845 0.0056 5 6 1.9695 3.5929 -0.0002 6 6 3.3571 3.6012 -0.0057 7 7 4.0418 2.4800 -0.0060 8 6 3.4409 1.2951 -0.0006 9 6 4.2531 0.0599 -0.0006 10 8 3.7075 -1.0263 0.0039 11 7 5.5986 0.1380 -0.0066 12 6 6.4034 -1.0861 -0.0061 13 6 7.8860 -0.7217 -0.1077 14 7 8.2335 0.2139 0.9647 15 6 8.1338 -0.1770 2.2733 16 1 7.7051 -1.1374 2.5189 17 6 8.5890 0.6587 3.2839 18 7 8.4927 0.2832 4.5417 19 14 9.3382 2.3162 2.8587 20 1 8.2708 3.3482 2.8261 21 1 10.3480 2.6809 3.8847 22 1 9.9913 2.2374 1.5274 23 6 8.7329 -1.9887 0.0264 24 6 10.2155 -1.6243 -0.0745 25 6 10.4885 -0.9695 -1.4301 26 6 9.6416 0.2975 -1.5643 27 6 8.1586 -0.0673 -1.4636 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 0.2174 2.3527 0.0096 32 1 1.4194 4.5222 -0.0009 33 1 3.8826 4.5447 -0.0098 34 1 6.0340 1.0048 -0.0106 35 1 6.1225 -1.7060 -0.8575 36 1 6.2272 -1.6365 0.9181 37 1 8.5344 1.1102 0.7479 38 1 8.8104 0.8674 5.2479 39 1 8.5387 -2.4550 0.9924 40 1 8.4744 -2.6849 -0.7714 41 1 10.8188 -2.5269 0.0215 42 1 10.4738 -0.9284 0.7237 43 1 10.2302 -1.6655 -2.2283 44 1 11.5446 -0.7095 -1.5019 45 1 9.8358 0.7638 -2.5303 46 1 9.8998 0.9934 -0.7661 47 1 7.8999 -0.7633 -2.2615 48 1 7.5552 0.8354 -1.5592 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001120062182.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:39:52 Heat of formation + Delta-G solvation = -27.908821 kcal Electronic energy + Delta-G solvation = -29948.578190 eV Core-core repulsion = 26004.058812 eV Total energy + Delta-G solvation = -3944.519378 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.88895 -39.29330 -38.29429 -38.01209 -34.39735 -33.23330 -32.45482 -31.19791 -30.81259 -30.25961 -29.07644 -27.60263 -25.83267 -23.98804 -23.39212 -22.91194 -22.12253 -20.71577 -20.01975 -18.52850 -18.14209 -17.68997 -17.49910 -17.10752 -16.04927 -15.37842 -15.25100 -14.91388 -14.66672 -14.48876 -14.28249 -14.19414 -13.87087 -13.63783 -13.43222 -13.35772 -13.00816 -12.61014 -12.53001 -12.15749 -12.01069 -11.86350 -11.64866 -11.61840 -11.57635 -11.16075 -10.91178 -10.76319 -10.53227 -10.21415 -10.02167 -9.98973 -9.94754 -9.79567 -9.58049 -9.37467 -9.27629 -8.81616 -8.58555 -8.24679 -7.22676 -5.70689 -3.06932 0.66307 1.12869 3.04763 3.06328 3.40443 3.42769 3.48807 3.59769 4.00061 4.31838 4.45384 4.61854 4.63752 4.85245 4.92873 4.94784 5.08212 5.11248 5.22922 5.24553 5.30104 5.41923 5.46932 5.60453 5.70606 5.79222 5.80498 5.81128 5.94915 6.01095 6.09769 6.13960 6.20320 6.23127 6.28549 6.41841 6.52467 6.59113 6.69452 6.79979 6.80927 7.02774 7.09239 7.12533 7.17425 7.71329 8.05485 8.20769 8.47949 8.78333 9.25576 9.97553 10.17071 11.47531 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011772 B = 0.004044 C = 0.003602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2378.012573 B = 6922.726031 C = 7770.942249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.271 6.271 3 C 0.133 3.867 4 C -0.178 4.178 5 C -0.113 4.113 6 C 0.057 3.943 7 N -0.416 5.416 8 C 0.055 3.945 9 C 0.564 3.436 10 O -0.530 6.530 11 N -0.683 5.683 12 C 0.115 3.885 13 C 0.198 3.802 14 N -0.735 5.735 15 C -0.231 4.231 16 H 0.091 0.909 17 C 0.008 3.992 18 N -0.933 5.933 19 Si 0.876 3.124 20 H -0.286 1.286 21 H -0.295 1.295 22 H -0.275 1.275 23 C -0.113 4.113 24 C -0.109 4.109 25 C -0.114 4.114 26 C -0.116 4.116 27 C -0.118 4.118 28 H 0.054 0.946 29 H 0.104 0.896 30 H 0.055 0.945 31 H 0.144 0.856 32 H 0.141 0.859 33 H 0.164 0.836 34 H 0.409 0.591 35 H 0.056 0.944 36 H 0.070 0.930 37 H 0.361 0.639 38 H 0.257 0.743 39 H 0.070 0.930 40 H 0.047 0.953 41 H 0.047 0.953 42 H 0.079 0.921 43 H 0.052 0.948 44 H 0.051 0.949 45 H 0.051 0.949 46 H 0.066 0.934 47 H 0.063 0.937 48 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.601 4.743 -14.117 18.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.180 6.180 3 C 0.082 3.918 4 C -0.205 4.205 5 C -0.133 4.133 6 C -0.103 4.103 7 N -0.127 5.127 8 C -0.085 4.085 9 C 0.348 3.652 10 O -0.407 6.407 11 N -0.333 5.333 12 C -0.010 4.010 13 C 0.106 3.894 14 N -0.378 5.378 15 C -0.361 4.361 16 H 0.108 0.892 17 C -0.188 4.188 18 N -0.581 5.581 19 Si 0.706 3.294 20 H -0.212 1.212 21 H -0.221 1.221 22 H -0.201 1.201 23 C -0.153 4.153 24 C -0.147 4.147 25 C -0.151 4.151 26 C -0.154 4.154 27 C -0.156 4.156 28 H 0.073 0.927 29 H 0.123 0.877 30 H 0.074 0.926 31 H 0.161 0.839 32 H 0.158 0.842 33 H 0.181 0.819 34 H 0.246 0.754 35 H 0.075 0.925 36 H 0.088 0.912 37 H 0.195 0.805 38 H 0.067 0.933 39 H 0.089 0.911 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.098 0.902 43 H 0.071 0.929 44 H 0.070 0.930 45 H 0.069 0.931 46 H 0.085 0.915 47 H 0.082 0.918 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -10.988 3.586 -13.894 18.074 hybrid contribution -0.542 2.016 0.072 2.089 sum -11.531 5.602 -13.822 18.852 Atomic orbital electron populations 1.23195 0.78886 1.04560 1.00993 1.86451 1.20591 1.24521 1.86442 1.20071 0.92415 0.85681 0.93648 1.21710 1.00888 0.91887 1.05973 1.22163 0.95787 0.98287 0.97097 1.22714 0.91320 0.96506 0.99767 1.67676 1.39856 0.97410 1.07776 1.20899 0.88610 0.93163 1.05798 1.17546 0.82630 0.86949 0.78093 1.90792 1.71929 1.27471 1.50519 1.45577 1.04765 1.11177 1.71792 1.21897 0.91837 0.85987 1.01322 1.19773 0.90660 0.91043 0.87897 1.42796 1.80847 1.11757 1.02409 1.18927 1.33036 1.03557 0.80591 0.89152 1.24627 1.01044 0.97968 0.95120 1.69701 1.52879 1.37197 0.98335 0.86688 0.79278 0.86048 0.77339 1.21232 1.22137 1.20103 1.21760 0.95224 0.96936 1.01399 1.21370 0.96057 1.00019 0.97262 1.21495 0.98641 0.96941 0.98067 1.21501 0.95078 0.98009 1.00807 1.21759 0.96333 1.00469 0.97057 0.92718 0.87723 0.92593 0.83857 0.84163 0.81919 0.75404 0.92549 0.91183 0.80517 0.93264 0.91115 0.93443 0.93426 0.90230 0.92919 0.93030 0.93070 0.91505 0.91782 0.92241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.83 101.05 0.99 1.16 16 2 O -0.27 -4.05 8.56 -40.59 -0.35 -4.40 16 3 C 0.13 1.95 6.71 -38.55 -0.26 1.70 16 4 C -0.18 -1.89 9.13 -39.14 -0.36 -2.25 16 5 C -0.11 -1.08 10.10 -39.36 -0.40 -1.48 16 6 C 0.06 0.68 11.17 -17.55 -0.20 0.48 16 7 N -0.42 -6.55 9.54 -9.71 -0.09 -6.65 16 8 C 0.05 0.94 6.76 -82.88 -0.56 0.38 16 9 C 0.56 11.18 7.80 -12.34 -0.10 11.08 16 10 O -0.53 -11.69 15.14 -16.64 -0.25 -11.95 16 11 N -0.68 -13.05 5.08 -61.25 -0.31 -13.36 16 12 C 0.12 2.19 4.37 -4.04 -0.02 2.18 16 13 C 0.20 3.57 0.41 -131.82 -0.05 3.52 16 14 N -0.73 -15.86 3.18 -47.23 -0.15 -16.02 16 15 C -0.23 -6.11 9.18 -15.06 -0.14 -6.24 16 16 H 0.09 2.63 7.01 -52.48 -0.37 2.26 16 17 C 0.01 0.23 5.50 -17.43 -0.10 0.13 16 18 N -0.93 -28.96 13.97 55.49 0.78 -28.19 16 19 Si 0.88 21.61 27.67 -169.99 -4.70 16.91 16 20 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 21 H -0.29 -7.53 7.11 56.52 0.40 -7.12 16 22 H -0.28 -6.30 6.62 56.52 0.37 -5.93 16 23 C -0.11 -1.98 4.51 -26.73 -0.12 -2.11 16 24 C -0.11 -1.84 5.77 -26.73 -0.15 -2.00 16 25 C -0.11 -1.64 5.92 -26.73 -0.16 -1.80 16 26 C -0.12 -1.72 5.75 -26.71 -0.15 -1.87 16 27 C -0.12 -1.81 4.65 -26.70 -0.12 -1.93 16 28 H 0.05 0.37 7.71 -51.93 -0.40 -0.03 16 29 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.06 0.41 7.69 -51.93 -0.40 0.02 16 31 H 0.14 1.04 6.46 -52.49 -0.34 0.70 16 32 H 0.14 0.82 8.06 -52.49 -0.42 0.39 16 33 H 0.16 1.45 8.06 -52.49 -0.42 1.03 16 34 H 0.41 7.73 6.72 -40.82 -0.27 7.45 16 35 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.07 1.53 7.51 -51.93 -0.39 1.14 16 37 H 0.36 7.82 4.58 -40.82 -0.19 7.64 16 38 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 39 H 0.07 1.40 7.23 -51.93 -0.38 1.03 16 40 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 41 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 42 H 0.08 1.59 7.60 -51.93 -0.39 1.19 16 43 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 44 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 46 H 0.07 1.12 6.92 -51.93 -0.36 0.76 16 47 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 48 H 0.06 0.90 7.29 -51.93 -0.38 0.52 16 LS Contribution 377.82 15.07 5.69 5.69 Total: -1.00 -33.93 377.82 -8.53 -42.46 By element: Atomic # 1 Polarization: 21.79 SS G_CDS: -7.26 Total: 14.53 kcal Atomic # 6 Polarization: 2.85 SS G_CDS: -1.89 Total: 0.96 kcal Atomic # 7 Polarization: -64.43 SS G_CDS: 0.22 Total: -64.21 kcal Atomic # 8 Polarization: -15.75 SS G_CDS: -0.60 Total: -16.34 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.70 Total: 16.91 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.93 -8.53 -42.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120062182.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.553 kcal (2) G-P(sol) polarization free energy of solvation -33.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds