Wall clock time and date at job start Tue Mar 31 2020 17:39:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35646 * 116.99742 * 2 1 4 4 C 1.39353 * 120.54393 * 0.26779 * 3 2 1 5 5 C 1.38298 * 118.43973 * 180.26205 * 4 3 2 6 6 C 1.38769 * 119.44541 * 359.73345 * 5 4 3 7 7 N 1.31369 * 121.06611 * 0.02562 * 6 5 4 8 8 C 1.32859 * 121.69945 * 359.97438 * 7 6 5 9 9 C 1.47829 * 119.78311 * 180.02562 * 8 7 6 10 10 O 1.21561 * 120.00128 * 180.02562 * 9 8 7 11 11 N 1.34772 * 120.00376 * 359.97438 * 9 8 7 12 12 C 1.46501 * 120.00156 * 179.97438 * 11 9 8 13 13 C 1.53002 * 109.47074 * 176.26094 * 12 11 9 14 14 N 1.46499 * 109.47079 * 54.66410 * 13 12 11 15 15 C 1.36935 * 120.00144 * 63.15979 * 14 13 12 16 16 H 1.08005 * 119.99749 * 353.79648 * 15 14 13 17 17 C 1.38807 * 120.00197 * 173.52152 * 15 14 13 18 18 N 1.31618 * 119.99771 * 179.97438 * 17 15 14 19 19 Si 1.86794 * 120.00076 * 359.97438 * 17 15 14 20 20 H 1.48506 * 109.47254 * 89.99850 * 19 17 15 21 21 H 1.48504 * 109.47485 * 209.99822 * 19 17 15 22 22 H 1.48503 * 109.47262 * 330.00045 * 19 17 15 23 23 C 1.52994 * 109.47245 * 174.66793 * 13 12 11 24 24 C 1.53002 * 109.47245 * 180.02562 * 23 13 12 25 25 C 1.53001 * 109.47287 * 299.99819 * 24 23 13 26 26 C 1.52994 * 109.46830 * 59.99927 * 25 24 23 27 27 C 1.53001 * 109.47287 * 294.66612 * 13 12 11 28 28 H 1.08998 * 109.47081 * 60.00388 * 1 2 3 29 29 H 1.08998 * 109.47074 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47152 * 299.99929 * 1 2 3 31 31 H 1.08002 * 120.77374 * 359.97438 * 4 3 2 32 32 H 1.07999 * 120.27626 * 179.70705 * 5 4 3 33 33 H 1.07994 * 119.46274 * 180.02562 * 6 5 4 34 34 H 0.96999 * 119.99947 * 0.02562 * 11 9 8 35 35 H 1.09002 * 109.46923 * 56.26533 * 12 11 9 36 36 H 1.08999 * 109.47630 * 296.25767 * 12 11 9 37 37 H 0.96997 * 120.00157 * 243.15029 * 14 13 12 38 38 H 0.97007 * 119.99739 * 180.02562 * 18 17 15 39 39 H 1.09007 * 109.46966 * 299.99920 * 23 13 12 40 40 H 1.08996 * 109.47701 * 59.99762 * 23 13 12 41 41 H 1.08999 * 109.47048 * 179.97438 * 24 23 13 42 42 H 1.08998 * 109.47285 * 60.00016 * 24 23 13 43 43 H 1.09003 * 109.46436 * 300.00259 * 25 24 23 44 44 H 1.08993 * 109.47035 * 179.97438 * 25 24 23 45 45 H 1.09007 * 109.46966 * 180.02562 * 26 25 24 46 46 H 1.08996 * 109.47701 * 60.00337 * 26 25 24 47 47 H 1.08998 * 109.47119 * 300.00299 * 27 13 12 48 48 H 1.08999 * 109.47147 * 59.99975 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2086 0.0000 4 6 1.2969 2.3845 0.0056 5 6 1.9695 3.5929 -0.0002 6 6 3.3571 3.6012 -0.0057 7 7 4.0418 2.4800 -0.0060 8 6 3.4409 1.2951 -0.0006 9 6 4.2531 0.0599 -0.0006 10 8 3.7075 -1.0263 0.0039 11 7 5.5986 0.1380 -0.0066 12 6 6.4034 -1.0861 -0.0061 13 6 7.8860 -0.7217 -0.1077 14 7 8.2335 0.2139 0.9647 15 6 8.1338 -0.1770 2.2733 16 1 7.7051 -1.1374 2.5189 17 6 8.5890 0.6587 3.2839 18 7 8.4927 0.2832 4.5417 19 14 9.3382 2.3162 2.8587 20 1 8.2708 3.3482 2.8261 21 1 10.3480 2.6809 3.8847 22 1 9.9913 2.2374 1.5274 23 6 8.7329 -1.9887 0.0264 24 6 10.2155 -1.6243 -0.0745 25 6 10.4885 -0.9695 -1.4301 26 6 9.6416 0.2975 -1.5643 27 6 8.1586 -0.0673 -1.4636 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 0.2174 2.3527 0.0096 32 1 1.4194 4.5222 -0.0009 33 1 3.8826 4.5447 -0.0098 34 1 6.0340 1.0048 -0.0106 35 1 6.1225 -1.7060 -0.8575 36 1 6.2272 -1.6365 0.9181 37 1 8.5344 1.1102 0.7479 38 1 8.8104 0.8674 5.2479 39 1 8.5387 -2.4550 0.9924 40 1 8.4744 -2.6849 -0.7714 41 1 10.8188 -2.5269 0.0215 42 1 10.4738 -0.9284 0.7237 43 1 10.2302 -1.6655 -2.2283 44 1 11.5446 -0.7095 -1.5019 45 1 9.8358 0.7638 -2.5303 46 1 9.8998 0.9934 -0.7661 47 1 7.8999 -0.7633 -2.2615 48 1 7.5552 0.8354 -1.5592 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001120062182.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:39:51 Heat of formation + Delta-G solvation = -51.436070 kcal Electronic energy + Delta-G solvation = -29949.598409 eV Core-core repulsion = 26004.058812 eV Total energy + Delta-G solvation = -3945.539596 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.93574 -40.73370 -39.56625 -39.14875 -35.90296 -35.07674 -33.54352 -32.89734 -31.86624 -31.59167 -30.75636 -28.37318 -27.15797 -25.40490 -25.14100 -23.82680 -23.46643 -21.99807 -21.46948 -19.88168 -19.72481 -19.33166 -18.67923 -18.12840 -17.02489 -16.78636 -16.46071 -16.40861 -16.24649 -15.93197 -15.55888 -15.29192 -15.09123 -14.93511 -14.78110 -14.52446 -14.37945 -14.21900 -13.90790 -13.53913 -13.44365 -13.31808 -12.94513 -12.82715 -12.66763 -12.44647 -12.41093 -12.36410 -12.09219 -11.90013 -11.67851 -11.33473 -11.27380 -11.14379 -10.83635 -10.81090 -10.74094 -10.55993 -9.95755 -9.47152 -9.23586 -7.92985 -5.25663 -0.34393 0.23003 1.39787 1.42819 1.49579 1.80461 2.17282 2.28595 2.54483 2.85259 3.26991 3.37738 3.54626 3.61421 3.77026 3.88566 3.94259 4.00484 4.06586 4.21663 4.28818 4.34943 4.36455 4.44106 4.48717 4.63126 4.68518 4.71001 4.72007 4.77020 4.85852 4.92359 4.94512 4.99318 5.03023 5.16235 5.21853 5.42285 5.42309 5.42907 5.49053 5.55901 5.64519 5.74757 5.89752 6.22579 6.30494 6.55820 6.87200 7.17120 7.29580 7.90972 8.11635 9.29226 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011772 B = 0.004044 C = 0.003602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2378.012573 B = 6922.726031 C = 7770.942249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.310 6.310 3 C 0.122 3.878 4 C -0.170 4.170 5 C -0.087 4.087 6 C 0.049 3.951 7 N -0.445 5.445 8 C 0.003 3.997 9 C 0.556 3.444 10 O -0.568 6.568 11 N -0.684 5.684 12 C 0.122 3.878 13 C 0.195 3.805 14 N -0.730 5.730 15 C -0.196 4.196 16 H 0.049 0.951 17 C -0.065 4.065 18 N -0.990 5.990 19 Si 0.944 3.056 20 H -0.283 1.283 21 H -0.306 1.306 22 H -0.245 1.245 23 C -0.112 4.112 24 C -0.108 4.108 25 C -0.108 4.108 26 C -0.115 4.115 27 C -0.111 4.111 28 H 0.080 0.920 29 H 0.111 0.889 30 H 0.073 0.927 31 H 0.183 0.817 32 H 0.192 0.808 33 H 0.193 0.807 34 H 0.410 0.590 35 H 0.071 0.929 36 H 0.026 0.974 37 H 0.366 0.634 38 H 0.252 0.748 39 H 0.032 0.968 40 H 0.076 0.924 41 H 0.058 0.942 42 H 0.042 0.958 43 H 0.076 0.924 44 H 0.065 0.935 45 H 0.082 0.918 46 H 0.044 0.956 47 H 0.088 0.912 48 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.649 7.685 -17.475 22.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.221 6.221 3 C 0.071 3.929 4 C -0.196 4.196 5 C -0.106 4.106 6 C -0.114 4.114 7 N -0.157 5.157 8 C -0.133 4.133 9 C 0.342 3.658 10 O -0.447 6.447 11 N -0.333 5.333 12 C -0.004 4.004 13 C 0.105 3.895 14 N -0.373 5.373 15 C -0.327 4.327 16 H 0.067 0.933 17 C -0.255 4.255 18 N -0.642 5.642 19 Si 0.773 3.227 20 H -0.210 1.210 21 H -0.234 1.234 22 H -0.169 1.169 23 C -0.151 4.151 24 C -0.145 4.145 25 C -0.145 4.145 26 C -0.152 4.152 27 C -0.149 4.149 28 H 0.098 0.902 29 H 0.129 0.871 30 H 0.091 0.909 31 H 0.200 0.800 32 H 0.209 0.791 33 H 0.210 0.790 34 H 0.247 0.753 35 H 0.089 0.911 36 H 0.045 0.955 37 H 0.200 0.800 38 H 0.061 0.939 39 H 0.051 0.949 40 H 0.095 0.905 41 H 0.077 0.923 42 H 0.060 0.940 43 H 0.095 0.905 44 H 0.084 0.916 45 H 0.101 0.899 46 H 0.063 0.937 47 H 0.106 0.894 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -12.037 6.507 -17.327 22.079 hybrid contribution -0.413 1.063 1.091 1.578 sum -12.450 7.570 -16.237 21.816 Atomic orbital electron populations 1.23527 0.76137 1.05844 1.03012 1.86390 1.23634 1.25544 1.86515 1.20273 0.91948 0.87042 0.93635 1.22182 1.02621 0.90568 1.04227 1.22727 0.94967 0.99816 0.93130 1.23403 0.92966 0.96246 0.98742 1.67552 1.41252 0.97937 1.08943 1.20494 0.89587 0.92532 1.10683 1.18166 0.82770 0.87986 0.76912 1.90738 1.72532 1.29196 1.52257 1.45573 1.04938 1.10869 1.71953 1.21777 0.92712 0.86229 0.99692 1.20008 0.89700 0.91016 0.88744 1.42696 1.80552 1.12634 1.01391 1.18728 1.29927 1.01302 0.82792 0.93276 1.25371 1.02971 1.02298 0.94871 1.69903 1.55637 1.38945 0.99672 0.85560 0.78142 0.80950 0.78053 1.20969 1.23353 1.16868 1.21733 0.96083 0.96917 1.00408 1.21329 0.95175 0.99941 0.98095 1.21471 0.99515 0.96979 0.96562 1.21507 0.94154 0.97884 1.01672 1.21729 0.97280 1.00875 0.95025 0.90171 0.87088 0.90850 0.79993 0.79116 0.79031 0.75287 0.91100 0.95537 0.80027 0.93938 0.94932 0.90545 0.92295 0.93953 0.90537 0.91641 0.89948 0.93693 0.89384 0.91894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.15 9.83 113.37 1.11 1.26 16 2 O -0.31 -9.38 8.56 -68.62 -0.59 -9.97 16 3 C 0.12 3.53 6.71 22.94 0.15 3.68 16 4 C -0.17 -3.02 9.13 22.55 0.21 -2.81 16 5 C -0.09 -1.26 10.10 22.41 0.23 -1.03 16 6 C 0.05 1.01 11.17 84.89 0.95 1.96 16 7 N -0.44 -13.81 9.54 -184.64 -1.76 -15.57 16 8 C 0.00 0.12 6.76 41.93 0.28 0.40 16 9 C 0.56 23.29 7.80 86.78 0.68 23.97 16 10 O -0.57 -26.75 15.14 17.08 0.26 -26.50 16 11 N -0.68 -27.36 5.08 -465.98 -2.37 -29.72 16 12 C 0.12 4.88 4.37 86.38 0.38 5.26 16 13 C 0.20 7.14 0.41 3.60 0.00 7.14 16 14 N -0.73 -32.23 3.18 -303.35 -0.97 -33.20 16 15 C -0.20 -10.95 9.18 84.03 0.77 -10.18 16 16 H 0.05 3.12 7.01 -2.91 -0.02 3.10 16 17 C -0.06 -3.83 5.50 84.86 0.47 -3.36 16 18 N -0.99 -64.91 13.97 21.65 0.30 -64.61 16 19 Si 0.94 45.79 27.67 68.60 1.90 47.69 16 20 H -0.28 -13.52 7.11 99.48 0.71 -12.82 16 21 H -0.31 -15.37 7.11 99.48 0.71 -14.66 16 22 H -0.24 -10.48 6.62 99.48 0.66 -9.82 16 23 C -0.11 -3.97 4.51 30.59 0.14 -3.83 16 24 C -0.11 -3.55 5.77 30.60 0.18 -3.37 16 25 C -0.11 -2.75 5.92 30.59 0.18 -2.57 16 26 C -0.11 -3.01 5.75 30.61 0.18 -2.83 16 27 C -0.11 -3.15 4.65 30.61 0.14 -3.01 16 28 H 0.08 0.87 7.71 -2.39 -0.02 0.85 16 29 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.07 0.91 7.69 -2.39 -0.02 0.89 16 31 H 0.18 1.72 6.46 -2.91 -0.02 1.70 16 32 H 0.19 0.87 8.06 -2.91 -0.02 0.85 16 33 H 0.19 2.68 8.06 -2.91 -0.02 2.66 16 34 H 0.41 15.95 6.72 -92.71 -0.62 15.33 16 35 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 36 H 0.03 1.27 7.51 -2.39 -0.02 1.25 16 37 H 0.37 15.67 4.58 -92.71 -0.42 15.24 16 38 H 0.25 15.91 8.31 -92.70 -0.77 15.14 16 39 H 0.03 1.38 7.23 -2.38 -0.02 1.36 16 40 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 41 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 42 H 0.04 1.70 7.60 -2.39 -0.02 1.68 16 43 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 44 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 45 H 0.08 1.72 8.14 -2.38 -0.02 1.70 16 46 H 0.04 1.39 6.92 -2.39 -0.02 1.37 16 47 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 48 H 0.06 1.77 7.29 -2.39 -0.02 1.75 16 Total: -1.00 -82.95 377.82 2.71 -80.24 By element: Atomic # 1 Polarization: 41.08 SS G_CDS: -0.11 Total: 40.96 kcal Atomic # 6 Polarization: 4.63 SS G_CDS: 6.04 Total: 10.67 kcal Atomic # 7 Polarization: -138.31 SS G_CDS: -4.79 Total: -143.10 kcal Atomic # 8 Polarization: -36.14 SS G_CDS: -0.33 Total: -36.47 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 1.90 Total: 47.69 kcal Total: -82.95 2.71 -80.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120062182.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.802 kcal (2) G-P(sol) polarization free energy of solvation -82.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds