Wall clock time and date at job start Tue Mar 31 2020 17:22:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34774 * 120.00012 * 2 1 4 4 O 1.21590 * 120.00148 * 0.02562 * 3 2 1 5 5 N 1.34774 * 119.99716 * 179.97438 * 3 2 1 6 6 C 1.46505 * 119.99818 * 180.02562 * 5 3 2 7 7 C 1.53116 * 109.52027 * 274.68277 * 6 5 3 8 8 C 1.53042 * 109.27913 * 182.43851 * 7 6 5 9 9 N 1.46852 * 109.51839 * 59.18083 * 8 7 6 10 10 C 1.46902 * 110.99671 * 174.16007 * 9 8 7 11 11 C 1.50701 * 109.47040 * 169.99746 * 10 9 8 12 12 C 1.38297 * 119.93136 * 269.73251 * 11 10 9 13 13 C 1.38107 * 120.06833 * 179.72556 * 12 11 10 14 14 C 1.38880 * 119.92632 * 0.54348 * 13 12 11 15 15 O 1.35753 * 120.06540 * 179.74892 * 14 13 12 16 16 C 1.34833 * 116.99577 * 174.44188 * 15 14 13 17 17 H 1.07997 * 120.00098 * 5.05387 * 16 15 14 18 18 C 1.38653 * 119.99745 * 185.05409 * 16 15 14 19 19 N 1.31563 * 119.99980 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00128 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46926 * 59.99994 * 20 18 16 22 22 H 1.48495 * 109.47291 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47012 * 300.00265 * 20 18 16 24 24 C 1.38884 * 119.86249 * 359.72687 * 14 13 12 25 25 C 1.38089 * 119.93087 * 0.02562 * 24 14 13 26 26 C 1.46844 * 111.19753 * 298.25545 * 9 8 7 27 27 C 1.53045 * 109.52154 * 61.74630 * 26 9 8 28 28 H 1.08999 * 109.47113 * 59.99901 * 1 2 3 29 29 H 1.09003 * 109.47158 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46969 * 299.99924 * 1 2 3 31 31 H 0.96997 * 119.99692 * 180.02562 * 2 1 3 32 32 H 0.97003 * 120.00402 * 0.02562 * 5 3 2 33 33 H 1.09005 * 109.57301 * 34.83953 * 6 5 3 34 34 H 1.09002 * 109.50419 * 62.50421 * 7 6 5 35 35 H 1.09001 * 109.50856 * 302.38352 * 7 6 5 36 36 H 1.08997 * 109.46040 * 299.16533 * 8 7 6 37 37 H 1.08993 * 109.46272 * 179.19420 * 8 7 6 38 38 H 1.08997 * 109.47204 * 290.00245 * 10 9 8 39 39 H 1.09003 * 109.46975 * 50.00530 * 10 9 8 40 40 H 1.07999 * 119.96581 * 359.97438 * 12 11 10 41 41 H 1.07999 * 120.03226 * 180.27139 * 13 12 11 42 42 H 0.97001 * 119.99997 * 179.97438 * 19 18 16 43 43 H 1.07994 * 120.02996 * 179.97438 * 24 14 13 44 44 H 1.08002 * 119.96634 * 180.02562 * 25 24 14 45 45 H 1.08997 * 109.45945 * 181.75715 * 26 9 8 46 46 H 1.08994 * 109.46812 * 301.74108 * 26 9 8 47 47 H 1.08996 * 109.49942 * 60.76179 * 27 26 9 48 48 H 1.09002 * 109.49968 * 180.83899 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5310 2.2202 0.0005 5 7 3.4866 1.1671 0.0005 6 6 4.2192 2.4359 0.0011 7 6 4.3735 2.9382 -1.4371 8 6 5.1916 4.2316 -1.4355 9 7 6.5108 3.9770 -0.8427 10 6 7.3735 5.1612 -0.9500 11 6 8.6168 4.9534 -0.1241 12 6 8.6392 5.3491 1.2008 13 6 9.7752 5.1549 1.9619 14 6 10.8996 4.5719 1.3921 15 8 12.0194 4.3843 2.1362 16 6 13.0333 3.7101 1.5570 17 1 12.9646 3.4182 0.5196 18 6 14.1641 3.3917 2.2934 19 7 14.2476 3.7470 3.5575 20 14 15.5686 2.4571 1.4913 21 1 16.0954 3.2423 0.3463 22 1 16.6512 2.2421 2.4846 23 1 15.0752 1.1435 1.0054 24 6 10.8757 4.1807 0.0598 25 6 9.7351 4.3729 -0.6945 26 6 6.3898 3.5389 0.5537 27 6 5.6075 2.2248 0.6114 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.9500 -0.8400 -0.0004 32 1 3.9717 0.3271 0.0005 33 1 3.6715 3.1735 0.5878 34 1 3.3888 3.1311 -1.8628 35 1 4.8869 2.1836 -2.0331 36 1 4.6709 4.9899 -0.8509 37 1 5.3155 4.5842 -2.4594 38 1 7.6514 5.3149 -1.9927 39 1 6.8365 6.0363 -0.5842 40 1 7.7661 5.8069 1.6419 41 1 9.7905 5.4602 2.9977 42 1 15.0385 3.5239 4.0727 43 1 11.7486 3.7274 -0.3861 44 1 9.7158 4.0686 -1.7305 45 1 7.3840 3.3885 0.9745 46 1 5.8634 4.3004 1.1290 47 1 6.1403 1.4591 0.0478 48 1 5.5050 1.9077 1.6492 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001137122863.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:22:24 Heat of formation + Delta-G solvation = -27.385823 kcal Electronic energy + Delta-G solvation = -28088.139042 eV Core-core repulsion = 24143.642343 eV Total energy + Delta-G solvation = -3944.496699 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.43014 -39.43486 -38.54470 -36.71495 -35.15504 -34.69847 -32.46734 -31.84747 -30.97729 -30.18523 -29.16092 -26.98341 -25.73279 -24.73472 -23.25601 -22.61364 -21.94119 -21.05264 -20.35624 -19.98463 -18.65636 -17.98027 -16.98371 -16.90896 -15.86662 -15.65401 -15.26027 -14.85980 -14.82953 -14.58439 -14.54590 -14.32477 -13.92481 -13.72687 -13.66626 -13.38033 -13.27046 -12.99967 -12.72566 -12.59572 -12.54686 -12.24886 -11.86323 -11.63595 -11.42499 -11.26371 -11.21141 -10.98993 -10.73908 -10.68115 -10.67807 -10.46307 -10.43540 -10.27681 -9.55392 -9.34444 -9.07206 -8.84144 -8.22591 -8.16682 -7.17385 -6.46433 -4.05256 2.19267 2.27038 2.46302 2.97944 3.12236 3.13024 3.16036 3.95221 3.96528 4.03021 4.59824 4.64199 4.75379 4.83797 5.01588 5.07216 5.10867 5.18866 5.25618 5.26810 5.37500 5.42800 5.43478 5.46123 5.55328 5.63056 5.74195 5.80023 5.85245 5.90451 5.92947 6.00902 6.10338 6.10795 6.20141 6.21843 6.34958 6.42840 6.64785 6.68376 6.89453 7.03203 7.11815 7.19715 7.29385 7.40113 7.43605 7.74039 7.80970 7.98581 8.36031 8.99142 9.69060 10.71391 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.018970 B = 0.002083 C = 0.001985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.653755 B =13436.606100 C =14099.281785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.754 5.754 3 C 0.701 3.299 4 O -0.591 6.591 5 N -0.740 5.740 6 C 0.163 3.837 7 C -0.124 4.124 8 C 0.058 3.942 9 N -0.533 5.533 10 C 0.113 3.887 11 C -0.186 4.186 12 C -0.069 4.069 13 C -0.194 4.194 14 C 0.156 3.844 15 O -0.178 6.178 16 C -0.392 4.392 17 H 0.092 0.908 18 C 0.039 3.961 19 N -0.863 5.863 20 Si 0.941 3.059 21 H -0.270 1.270 22 H -0.278 1.278 23 H -0.270 1.270 24 C -0.236 4.236 25 C -0.049 4.049 26 C 0.057 3.943 27 C -0.123 4.123 28 H 0.057 0.943 29 H 0.074 0.926 30 H 0.057 0.943 31 H 0.397 0.603 32 H 0.396 0.604 33 H 0.084 0.916 34 H 0.068 0.932 35 H 0.071 0.929 36 H 0.033 0.967 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.032 0.968 40 H 0.107 0.893 41 H 0.116 0.884 42 H 0.270 0.730 43 H 0.126 0.874 44 H 0.108 0.892 45 H 0.098 0.902 46 H 0.031 0.969 47 H 0.076 0.924 48 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.351 -6.995 -8.677 24.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.410 5.410 3 C 0.401 3.599 4 O -0.469 6.469 5 N -0.394 5.394 6 C 0.058 3.942 7 C -0.163 4.163 8 C -0.071 4.071 9 N -0.258 5.258 10 C -0.013 4.013 11 C -0.187 4.187 12 C -0.087 4.087 13 C -0.213 4.213 14 C 0.102 3.898 15 O -0.081 6.081 16 C -0.468 4.468 17 H 0.109 0.891 18 C -0.165 4.165 19 N -0.497 5.497 20 Si 0.765 3.235 21 H -0.195 1.195 22 H -0.203 1.203 23 H -0.195 1.195 24 C -0.255 4.255 25 C -0.068 4.068 26 C -0.072 4.072 27 C -0.161 4.161 28 H 0.076 0.924 29 H 0.092 0.908 30 H 0.076 0.924 31 H 0.230 0.770 32 H 0.229 0.771 33 H 0.102 0.898 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.051 0.949 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.051 0.949 40 H 0.125 0.875 41 H 0.134 0.866 42 H 0.080 0.920 43 H 0.144 0.856 44 H 0.126 0.874 45 H 0.116 0.884 46 H 0.049 0.951 47 H 0.095 0.905 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -21.489 -6.333 -8.503 23.963 hybrid contribution 0.773 -0.703 0.004 1.045 sum -20.716 -7.036 -8.499 23.471 Atomic orbital electron populations 1.21374 0.78259 1.01856 1.02246 1.44945 1.07759 1.07220 1.81032 1.16011 0.81945 0.84224 0.77708 1.90929 1.67904 1.30299 1.57778 1.45259 1.04433 1.09869 1.79831 1.20942 0.91827 0.84674 0.96797 1.21963 0.99749 0.97750 0.96803 1.22025 0.89056 0.96098 0.99914 1.62096 1.11644 1.34333 1.17769 1.20805 0.91150 0.89980 0.99364 1.19087 0.95506 1.09349 0.94798 1.20510 0.96507 0.98518 0.93209 1.20173 0.92305 1.08535 1.00272 1.19400 0.87479 0.92648 0.90299 1.83978 1.19866 1.64809 1.39421 1.21280 0.94293 1.34498 0.96715 0.89084 1.25291 0.98278 0.97428 0.95525 1.70032 1.29069 1.43468 1.07169 0.85785 0.79506 0.79580 0.78592 1.19496 1.20294 1.19489 1.21159 0.99867 1.09733 0.94757 1.20573 0.91993 0.95868 0.98371 1.22129 1.01349 0.94661 0.89037 1.21890 0.93880 0.99297 1.01045 0.92450 0.90758 0.92432 0.77011 0.77062 0.89788 0.91315 0.91016 0.94915 0.90644 0.90732 0.94943 0.87504 0.86625 0.91967 0.85619 0.87402 0.88430 0.95068 0.90518 0.91038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.65 10.70 59.85 0.64 1.29 16 2 N -0.75 -5.34 5.72 -72.07 -0.41 -5.75 16 3 C 0.70 7.57 8.54 -86.92 -0.74 6.83 16 4 O -0.59 -8.96 16.01 5.29 0.08 -8.88 16 5 N -0.74 -6.55 5.09 -58.56 -0.30 -6.85 16 6 C 0.16 1.69 2.52 -67.81 -0.17 1.52 16 7 C -0.12 -1.29 5.67 -26.65 -0.15 -1.44 16 8 C 0.06 0.63 5.42 -3.83 -0.02 0.61 16 9 N -0.53 -6.69 4.80 -236.11 -1.13 -7.82 16 10 C 0.11 1.52 5.43 -4.97 -0.03 1.49 16 11 C -0.19 -3.04 4.12 -104.58 -0.43 -3.47 16 12 C -0.07 -1.17 7.80 -39.61 -0.31 -1.48 16 13 C -0.19 -3.98 9.99 -39.39 -0.39 -4.37 16 14 C 0.16 3.68 6.65 -39.10 -0.26 3.42 16 15 O -0.18 -5.01 9.76 0.03 0.00 -5.01 16 16 C -0.39 -10.81 9.49 30.89 0.29 -10.52 16 17 H 0.09 2.32 5.20 -52.49 -0.27 2.05 16 18 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 19 N -0.86 -25.08 13.67 55.48 0.76 -24.33 16 20 Si 0.94 20.31 29.55 -169.99 -5.02 15.28 16 21 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 22 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 23 H -0.27 -5.64 7.11 56.52 0.40 -5.23 16 24 C -0.24 -5.00 9.17 -39.40 -0.36 -5.37 16 25 C -0.05 -0.88 9.69 -39.61 -0.38 -1.26 16 26 C 0.06 0.71 4.58 -3.83 -0.02 0.69 16 27 C -0.12 -1.28 5.57 -26.65 -0.15 -1.42 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.40 1.58 8.84 -40.82 -0.36 1.22 16 32 H 0.40 2.44 8.62 -40.82 -0.35 2.09 16 33 H 0.08 1.05 7.58 -51.93 -0.39 0.66 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.08 0.76 8.12 -51.93 -0.42 0.34 16 38 H 0.07 0.94 8.08 -51.93 -0.42 0.52 16 39 H 0.03 0.42 8.02 -51.93 -0.42 0.00 16 40 H 0.11 1.58 8.06 -52.49 -0.42 1.15 16 41 H 0.12 2.32 8.06 -52.49 -0.42 1.89 16 42 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 43 H 0.13 2.69 5.64 -52.49 -0.30 2.39 16 44 H 0.11 1.70 8.06 -52.49 -0.42 1.27 16 45 H 0.10 1.45 5.65 -51.93 -0.29 1.16 16 46 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 47 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 48 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 388.26 15.07 5.85 5.85 Total: -1.00 -33.14 388.26 -10.19 -43.33 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: -7.44 Total: 6.68 kcal Atomic # 6 Polarization: -9.94 SS G_CDS: -2.58 Total: -12.51 kcal Atomic # 7 Polarization: -43.66 SS G_CDS: -1.08 Total: -44.75 kcal Atomic # 8 Polarization: -13.97 SS G_CDS: 0.08 Total: -13.88 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.14 -10.19 -43.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137122863.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.944 kcal (2) G-P(sol) polarization free energy of solvation -33.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds