Wall clock time and date at job start Tue Mar 31 2020 17:22:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34774 * 120.00012 * 2 1 4 4 O 1.21590 * 120.00148 * 0.02562 * 3 2 1 5 5 N 1.34774 * 119.99716 * 179.97438 * 3 2 1 6 6 C 1.46505 * 119.99818 * 180.02562 * 5 3 2 7 7 C 1.53116 * 109.52027 * 274.68277 * 6 5 3 8 8 C 1.53042 * 109.27913 * 182.43851 * 7 6 5 9 9 N 1.46852 * 109.51839 * 59.18083 * 8 7 6 10 10 C 1.46902 * 110.99671 * 174.16007 * 9 8 7 11 11 C 1.50701 * 109.47040 * 169.99746 * 10 9 8 12 12 C 1.38297 * 119.93136 * 269.73251 * 11 10 9 13 13 C 1.38107 * 120.06833 * 179.72556 * 12 11 10 14 14 C 1.38880 * 119.92632 * 0.54348 * 13 12 11 15 15 O 1.35753 * 120.06540 * 179.74892 * 14 13 12 16 16 C 1.34833 * 116.99577 * 174.44188 * 15 14 13 17 17 H 1.07997 * 120.00098 * 5.05387 * 16 15 14 18 18 C 1.38653 * 119.99745 * 185.05409 * 16 15 14 19 19 N 1.31563 * 119.99980 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00128 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46926 * 59.99994 * 20 18 16 22 22 H 1.48495 * 109.47291 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47012 * 300.00265 * 20 18 16 24 24 C 1.38884 * 119.86249 * 359.72687 * 14 13 12 25 25 C 1.38089 * 119.93087 * 0.02562 * 24 14 13 26 26 C 1.46844 * 111.19753 * 298.25545 * 9 8 7 27 27 C 1.53045 * 109.52154 * 61.74630 * 26 9 8 28 28 H 1.08999 * 109.47113 * 59.99901 * 1 2 3 29 29 H 1.09003 * 109.47158 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46969 * 299.99924 * 1 2 3 31 31 H 0.96997 * 119.99692 * 180.02562 * 2 1 3 32 32 H 0.97003 * 120.00402 * 0.02562 * 5 3 2 33 33 H 1.09005 * 109.57301 * 34.83953 * 6 5 3 34 34 H 1.09002 * 109.50419 * 62.50421 * 7 6 5 35 35 H 1.09001 * 109.50856 * 302.38352 * 7 6 5 36 36 H 1.08997 * 109.46040 * 299.16533 * 8 7 6 37 37 H 1.08993 * 109.46272 * 179.19420 * 8 7 6 38 38 H 1.08997 * 109.47204 * 290.00245 * 10 9 8 39 39 H 1.09003 * 109.46975 * 50.00530 * 10 9 8 40 40 H 1.07999 * 119.96581 * 359.97438 * 12 11 10 41 41 H 1.07999 * 120.03226 * 180.27139 * 13 12 11 42 42 H 0.97001 * 119.99997 * 179.97438 * 19 18 16 43 43 H 1.07994 * 120.02996 * 179.97438 * 24 14 13 44 44 H 1.08002 * 119.96634 * 180.02562 * 25 24 14 45 45 H 1.08997 * 109.45945 * 181.75715 * 26 9 8 46 46 H 1.08994 * 109.46812 * 301.74108 * 26 9 8 47 47 H 1.08996 * 109.49942 * 60.76179 * 27 26 9 48 48 H 1.09002 * 109.49968 * 180.83899 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5310 2.2202 0.0005 5 7 3.4866 1.1671 0.0005 6 6 4.2192 2.4359 0.0011 7 6 4.3735 2.9382 -1.4371 8 6 5.1916 4.2316 -1.4355 9 7 6.5108 3.9770 -0.8427 10 6 7.3735 5.1612 -0.9500 11 6 8.6168 4.9534 -0.1241 12 6 8.6392 5.3491 1.2008 13 6 9.7752 5.1549 1.9619 14 6 10.8996 4.5719 1.3921 15 8 12.0194 4.3843 2.1362 16 6 13.0333 3.7101 1.5570 17 1 12.9646 3.4182 0.5196 18 6 14.1641 3.3917 2.2934 19 7 14.2476 3.7470 3.5575 20 14 15.5686 2.4571 1.4913 21 1 16.0954 3.2423 0.3463 22 1 16.6512 2.2421 2.4846 23 1 15.0752 1.1435 1.0054 24 6 10.8757 4.1807 0.0598 25 6 9.7351 4.3729 -0.6945 26 6 6.3898 3.5389 0.5537 27 6 5.6075 2.2248 0.6114 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.9500 -0.8400 -0.0004 32 1 3.9717 0.3271 0.0005 33 1 3.6715 3.1735 0.5878 34 1 3.3888 3.1311 -1.8628 35 1 4.8869 2.1836 -2.0331 36 1 4.6709 4.9899 -0.8509 37 1 5.3155 4.5842 -2.4594 38 1 7.6514 5.3149 -1.9927 39 1 6.8365 6.0363 -0.5842 40 1 7.7661 5.8069 1.6419 41 1 9.7905 5.4602 2.9977 42 1 15.0385 3.5239 4.0727 43 1 11.7486 3.7274 -0.3861 44 1 9.7158 4.0686 -1.7305 45 1 7.3840 3.3885 0.9745 46 1 5.8634 4.3004 1.1290 47 1 6.1403 1.4591 0.0478 48 1 5.5050 1.9077 1.6492 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001137122863.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:22:23 Heat of formation + Delta-G solvation = -52.038418 kcal Electronic energy + Delta-G solvation = -28089.208059 eV Core-core repulsion = 24143.642343 eV Total energy + Delta-G solvation = -3945.565716 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.31107 -40.85888 -39.80009 -38.21888 -36.12919 -35.51361 -34.31031 -32.99721 -31.97852 -31.68638 -30.46406 -27.87666 -27.32663 -26.01280 -24.26152 -23.64649 -23.49494 -21.96998 -21.66695 -20.92917 -19.82427 -19.40394 -18.79217 -17.75881 -16.78873 -16.59516 -16.45426 -16.36141 -16.16435 -15.64776 -15.54649 -15.46281 -15.34519 -15.09347 -15.02837 -14.51565 -14.36330 -14.19717 -14.05119 -13.79426 -13.57373 -13.23004 -13.03005 -12.94057 -12.86508 -12.50089 -12.37014 -12.23505 -12.15168 -12.10912 -11.97725 -11.74200 -11.47699 -11.28441 -11.14783 -10.76396 -10.35340 -9.76929 -9.73059 -9.26466 -8.82747 -8.45360 -6.13320 0.61780 0.69387 1.36188 1.46653 1.52276 1.77197 2.15344 2.19227 2.75545 3.04840 3.31154 3.36293 3.53805 3.75179 3.85805 4.03194 4.07344 4.15229 4.21448 4.30423 4.42277 4.46023 4.50123 4.53808 4.62604 4.66526 4.67165 4.73781 4.77877 4.86598 4.96831 4.97713 5.01786 5.08852 5.13472 5.15843 5.18121 5.30093 5.34188 5.50994 5.57310 5.58654 5.74286 5.83924 6.02563 6.04789 6.14426 6.19741 6.28456 6.99410 7.12079 7.60149 7.80586 8.77537 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.018970 B = 0.002083 C = 0.001985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.653755 B =13436.606100 C =14099.281785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.740 5.740 3 C 0.694 3.306 4 O -0.639 6.639 5 N -0.729 5.729 6 C 0.169 3.831 7 C -0.115 4.115 8 C 0.060 3.940 9 N -0.535 5.535 10 C 0.114 3.886 11 C -0.156 4.156 12 C -0.058 4.058 13 C -0.204 4.204 14 C 0.115 3.885 15 O -0.233 6.233 16 C -0.412 4.412 17 H 0.102 0.898 18 C -0.024 4.024 19 N -0.921 5.921 20 Si 1.018 2.982 21 H -0.257 1.257 22 H -0.273 1.273 23 H -0.257 1.257 24 C -0.242 4.242 25 C -0.048 4.048 26 C 0.056 3.944 27 C -0.113 4.113 28 H 0.046 0.954 29 H 0.112 0.888 30 H 0.044 0.956 31 H 0.414 0.586 32 H 0.411 0.589 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.077 0.923 36 H 0.031 0.969 37 H 0.090 0.910 38 H 0.093 0.907 39 H 0.046 0.954 40 H 0.138 0.862 41 H 0.110 0.890 42 H 0.272 0.728 43 H 0.118 0.882 44 H 0.139 0.861 45 H 0.073 0.927 46 H 0.032 0.968 47 H 0.082 0.918 48 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.248 -8.273 -11.283 27.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.396 5.396 3 C 0.394 3.606 4 O -0.521 6.521 5 N -0.384 5.384 6 C 0.063 3.937 7 C -0.154 4.154 8 C -0.068 4.068 9 N -0.261 5.261 10 C -0.012 4.012 11 C -0.157 4.157 12 C -0.077 4.077 13 C -0.223 4.223 14 C 0.065 3.935 15 O -0.140 6.140 16 C -0.488 4.488 17 H 0.119 0.881 18 C -0.221 4.221 19 N -0.559 5.559 20 Si 0.837 3.163 21 H -0.182 1.182 22 H -0.197 1.197 23 H -0.181 1.181 24 C -0.262 4.262 25 C -0.066 4.066 26 C -0.073 4.073 27 C -0.151 4.151 28 H 0.064 0.936 29 H 0.130 0.870 30 H 0.063 0.937 31 H 0.250 0.750 32 H 0.247 0.753 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.096 0.904 36 H 0.049 0.951 37 H 0.108 0.892 38 H 0.111 0.889 39 H 0.065 0.935 40 H 0.156 0.844 41 H 0.128 0.872 42 H 0.081 0.919 43 H 0.135 0.865 44 H 0.156 0.844 45 H 0.092 0.908 46 H 0.050 0.950 47 H 0.100 0.900 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -23.431 -7.658 -11.147 27.054 hybrid contribution 0.966 -0.236 0.695 1.213 sum -22.465 -7.894 -10.452 26.005 Atomic orbital electron populations 1.21511 0.77501 1.03979 1.01062 1.44872 1.08265 1.06910 1.79587 1.16266 0.82312 0.84489 0.77542 1.90896 1.68914 1.32290 1.60006 1.45063 1.03963 1.10128 1.79238 1.20753 0.91485 0.84894 0.96557 1.21868 0.99218 0.97746 0.96592 1.22055 0.87996 0.96257 1.00487 1.62098 1.12545 1.33784 1.17627 1.20860 0.89747 0.90900 0.99739 1.19526 0.96216 1.05494 0.94471 1.20829 0.96026 0.97430 0.93388 1.20390 0.92726 1.08523 1.00660 1.19928 0.87530 0.94535 0.91504 1.83943 1.21504 1.67303 1.41238 1.21771 0.94838 1.34777 0.97418 0.88080 1.26583 1.01067 0.98360 0.96108 1.70183 1.30312 1.46271 1.09167 0.84662 0.75535 0.78365 0.77763 1.18179 1.19749 1.18114 1.21248 1.00993 1.09791 0.94138 1.20891 0.91007 0.95205 0.99504 1.22083 1.00252 0.95847 0.89100 1.21784 0.93480 0.98318 1.01568 0.93568 0.86964 0.93746 0.74954 0.75257 0.91989 0.92179 0.90436 0.95068 0.89198 0.88903 0.93542 0.84412 0.87164 0.91905 0.86452 0.84362 0.90819 0.94956 0.89966 0.90481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.08 10.70 127.77 1.37 2.44 16 2 N -0.74 -8.95 5.72 -500.19 -2.86 -11.81 16 3 C 0.69 14.02 8.54 179.06 1.53 15.55 16 4 O -0.64 -19.15 16.01 -4.00 -0.06 -19.21 16 5 N -0.73 -11.46 5.09 -457.43 -2.33 -13.78 16 6 C 0.17 3.20 2.52 45.07 0.11 3.31 16 7 C -0.12 -2.12 5.67 30.65 0.17 -1.94 16 8 C 0.06 1.12 5.42 86.33 0.47 1.59 16 9 N -0.54 -11.53 4.80 -900.92 -4.32 -15.85 16 10 C 0.11 2.57 5.43 85.56 0.46 3.03 16 11 C -0.16 -4.64 4.12 -19.83 -0.08 -4.72 16 12 C -0.06 -1.89 7.80 22.25 0.17 -1.71 16 13 C -0.20 -8.52 9.99 22.39 0.22 -8.30 16 14 C 0.12 5.67 6.65 22.58 0.15 5.82 16 15 O -0.23 -13.99 9.76 -22.80 -0.22 -14.22 16 16 C -0.41 -23.87 9.49 67.92 0.64 -23.22 16 17 H 0.10 5.36 5.20 -2.91 -0.02 5.34 16 18 C -0.02 -1.35 5.49 84.83 0.47 -0.88 16 19 N -0.92 -56.49 13.67 21.61 0.30 -56.19 16 20 Si 1.02 42.60 29.55 68.60 2.03 44.62 16 21 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 22 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 23 H -0.26 -10.06 7.11 99.48 0.71 -9.36 16 24 C -0.24 -10.35 9.17 22.39 0.21 -10.14 16 25 C -0.05 -1.59 9.69 22.25 0.22 -1.37 16 26 C 0.06 1.26 4.58 86.33 0.40 1.65 16 27 C -0.11 -2.09 5.57 30.65 0.17 -1.92 16 28 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.11 0.30 8.14 -2.39 -0.02 0.28 16 30 H 0.04 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.41 2.10 8.84 -92.71 -0.82 1.28 16 32 H 0.41 3.96 8.62 -92.71 -0.80 3.16 16 33 H 0.06 1.49 7.58 -2.38 -0.02 1.47 16 34 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.03 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.09 1.45 8.12 -2.39 -0.02 1.43 16 38 H 0.09 1.86 8.08 -2.39 -0.02 1.84 16 39 H 0.05 0.97 8.02 -2.39 -0.02 0.95 16 40 H 0.14 3.64 8.06 -2.91 -0.02 3.62 16 41 H 0.11 4.62 8.06 -2.91 -0.02 4.60 16 42 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 43 H 0.12 5.12 5.64 -2.91 -0.02 5.11 16 44 H 0.14 3.81 8.06 -2.91 -0.02 3.79 16 45 H 0.07 2.04 5.65 -2.39 -0.01 2.03 16 46 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 47 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 48 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -77.70 388.26 -1.43 -79.13 By element: Atomic # 1 Polarization: 28.78 SS G_CDS: -0.64 Total: 28.15 kcal Atomic # 6 Polarization: -27.50 SS G_CDS: 6.68 Total: -20.83 kcal Atomic # 7 Polarization: -88.43 SS G_CDS: -9.21 Total: -97.64 kcal Atomic # 8 Polarization: -33.14 SS G_CDS: -0.29 Total: -33.43 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.62 kcal Total: -77.70 -1.43 -79.13 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137122863.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.090 kcal (2) G-P(sol) polarization free energy of solvation -77.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds