Wall clock time and date at job start Tue Mar 31 2020 17:26:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35672 * 117.00001 * 2 1 4 4 C 1.38922 * 119.68842 * 179.97438 * 3 2 1 5 5 C 1.38373 * 119.11091 * 180.25516 * 4 3 2 6 6 C 1.50709 * 120.75398 * 179.72414 * 5 4 3 7 7 C 1.52994 * 109.47314 * 89.99675 * 6 5 4 8 8 C 1.50696 * 109.47313 * 179.97438 * 7 6 5 9 9 O 1.21276 * 120.00077 * 0.02562 * 8 7 6 10 10 N 1.34777 * 120.00076 * 179.97438 * 8 7 6 11 11 C 1.47079 * 120.87902 * 359.72598 * 10 8 7 12 12 C 1.53696 * 108.27603 * 128.75650 * 11 10 8 13 13 N 1.46897 * 109.25888 * 54.07773 * 12 11 10 14 14 C 1.46903 * 110.99845 * 172.60955 * 13 12 11 15 15 C 1.50697 * 109.47249 * 294.29855 * 14 13 12 16 16 H 1.08002 * 120.00074 * 0.02562 * 15 14 13 17 17 C 1.37877 * 120.00187 * 179.97438 * 15 14 13 18 18 N 1.31514 * 120.00039 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 120.00188 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.46798 * 0.02562 * 19 17 15 21 21 H 1.48494 * 109.47295 * 120.00225 * 19 17 15 22 22 H 1.48498 * 109.47373 * 240.00510 * 19 17 15 23 23 C 1.46892 * 111.27063 * 296.75783 * 13 12 11 24 24 C 1.47081 * 120.88318 * 180.02562 * 10 8 7 25 25 C 1.38825 * 118.48977 * 359.50586 * 5 4 3 26 26 C 1.38050 * 119.28846 * 0.51297 * 25 5 4 27 27 N 1.31966 * 120.82946 * 359.73156 * 26 25 5 28 28 H 1.09003 * 109.46976 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47291 * 300.00015 * 1 2 3 30 30 H 1.09001 * 109.47233 * 60.00612 * 1 2 3 31 31 H 1.08002 * 120.43904 * 359.97271 * 4 3 2 32 32 H 1.09001 * 109.46608 * 209.99946 * 6 5 4 33 33 H 1.08998 * 109.46962 * 329.99538 * 6 5 4 34 34 H 1.09002 * 109.47223 * 300.00447 * 7 6 5 35 35 H 1.09007 * 109.46962 * 60.00039 * 7 6 5 36 36 H 1.09008 * 109.62548 * 248.51606 * 11 10 8 37 37 H 1.08994 * 109.63475 * 9.10399 * 11 10 8 38 38 H 1.08995 * 109.64871 * 294.07308 * 12 11 10 39 39 H 1.09004 * 109.42056 * 173.94604 * 12 11 10 40 40 H 1.08995 * 109.47332 * 54.30413 * 14 13 12 41 41 H 1.09004 * 109.46961 * 174.30637 * 14 13 12 42 42 H 0.96998 * 120.00113 * 179.97438 * 18 17 15 43 43 H 1.09006 * 109.49482 * 303.14637 * 23 13 12 44 44 H 1.09005 * 109.49842 * 183.06586 * 23 13 12 45 45 H 1.09000 * 109.62293 * 350.89769 * 24 10 8 46 46 H 1.09000 * 109.62645 * 111.47570 * 24 10 8 47 47 H 1.07999 * 120.36223 * 180.26605 * 25 5 4 48 48 H 1.07997 * 119.58537 * 179.75177 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2088 0.0000 4 6 3.4326 1.2740 0.0005 5 6 4.0483 2.5132 0.0059 6 6 5.5511 2.6270 0.0129 7 6 6.0662 2.6684 -1.4271 8 6 7.5688 2.7829 -1.4201 9 8 8.1687 2.8265 -0.3670 10 7 8.2460 2.8357 -2.5842 11 6 7.5387 2.7772 -3.8724 12 6 8.0134 3.9560 -4.7369 13 7 9.4791 3.9278 -4.8318 14 6 9.9639 4.9306 -5.7896 15 6 9.5004 4.5660 -7.1764 16 1 8.9049 3.6784 -7.3308 17 6 9.8358 5.3662 -8.2480 18 7 10.5606 6.4474 -8.0599 19 14 9.2607 4.9147 -9.9670 20 1 8.4657 3.6617 -9.9097 21 1 8.4187 6.0102 -10.5110 22 1 10.4400 4.7133 -10.8466 23 6 10.1020 4.1136 -3.5146 24 6 9.7125 2.9469 -2.6000 25 6 3.2504 3.6492 0.0001 26 6 1.8769 3.5097 -0.0001 27 7 1.3186 2.3140 0.0000 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 4.0228 0.3695 0.0014 32 1 5.8438 3.5408 0.5300 33 1 5.9783 1.7659 0.5269 34 1 5.7734 1.7546 -1.9442 35 1 5.6390 3.5296 -1.9411 36 1 7.7674 1.8365 -4.3732 37 1 6.4645 2.8541 -3.7042 38 1 7.6963 4.8947 -4.2827 39 1 7.5826 3.8704 -5.7345 40 1 9.5696 5.9105 -5.5206 41 1 11.0533 4.9584 -5.7663 42 1 10.7969 7.0101 -8.8139 43 1 9.7559 5.0501 -3.0773 44 1 11.1860 4.1423 -3.6256 45 1 10.0762 3.1360 -1.5900 46 1 10.1457 2.0221 -2.9810 47 1 3.6991 4.6315 -0.0003 48 1 1.2516 4.3902 -0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001142232225.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:26:53 Heat of formation + Delta-G solvation = -32.835373 kcal Electronic energy + Delta-G solvation = -27910.984567 eV Core-core repulsion = 23966.251557 eV Total energy + Delta-G solvation = -3944.733010 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.97566 -40.04722 -38.35320 -37.59358 -34.92586 -34.44365 -32.50026 -31.48523 -31.01534 -30.36882 -28.32491 -27.58357 -26.00811 -24.84487 -23.71613 -23.26365 -22.16455 -21.57219 -20.45061 -18.62248 -18.22469 -17.45185 -16.96548 -16.43311 -16.31222 -16.22504 -15.78195 -15.71935 -14.82191 -14.80795 -14.54287 -14.46797 -14.08064 -13.92410 -13.71443 -13.62225 -13.46856 -12.88582 -12.66550 -12.57958 -12.30883 -12.18229 -12.04365 -11.91922 -11.50706 -11.33982 -11.27446 -11.09260 -11.01114 -10.78672 -10.68233 -10.54769 -10.01140 -9.96813 -9.91625 -9.62235 -9.30736 -8.82880 -8.55153 -8.47200 -7.37563 -6.10121 -4.12295 0.84003 0.93660 2.66260 2.76214 3.06898 3.25900 3.33856 3.37520 3.46361 3.99215 4.24817 4.35410 4.58114 4.71495 4.72509 4.78247 4.83246 4.87384 4.93980 4.97982 5.02705 5.20595 5.25441 5.28275 5.32893 5.36084 5.40784 5.49112 5.57268 5.60580 5.61466 5.73160 5.82385 5.84498 5.99640 6.06825 6.14317 6.24258 6.40090 6.41920 6.63670 6.91546 7.17637 7.23362 7.50605 7.53765 7.70421 7.97134 8.07510 8.20985 8.42951 8.95137 9.52485 11.00669 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014001 B = 0.002190 C = 0.002001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1999.391182 B =12782.069367 C =13992.619238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.309 6.309 3 C 0.320 3.680 4 C -0.187 4.187 5 C -0.002 4.002 6 C -0.066 4.066 7 C -0.134 4.134 8 C 0.514 3.486 9 O -0.552 6.552 10 N -0.607 5.607 11 C 0.108 3.892 12 C 0.050 3.950 13 N -0.536 5.536 14 C 0.193 3.807 15 C -0.509 4.509 16 H 0.064 0.936 17 C 0.055 3.945 18 N -0.897 5.897 19 Si 0.898 3.102 20 H -0.272 1.272 21 H -0.285 1.285 22 H -0.284 1.284 23 C 0.041 3.959 24 C 0.117 3.883 25 C -0.206 4.206 26 C 0.140 3.860 27 N -0.546 5.546 28 H 0.095 0.905 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.141 0.859 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.077 0.923 37 H 0.080 0.920 38 H 0.025 0.975 39 H 0.097 0.903 40 H -0.009 1.009 41 H 0.032 0.968 42 H 0.261 0.739 43 H 0.026 0.974 44 H 0.081 0.919 45 H 0.088 0.912 46 H 0.072 0.928 47 H 0.139 0.861 48 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.809 -8.951 16.546 25.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.216 6.216 3 C 0.141 3.859 4 C -0.208 4.208 5 C -0.009 4.009 6 C -0.104 4.104 7 C -0.174 4.174 8 C 0.302 3.698 9 O -0.431 6.431 10 N -0.341 5.341 11 C -0.015 4.015 12 C -0.079 4.079 13 N -0.261 5.261 14 C 0.068 3.932 15 C -0.548 4.548 16 H 0.083 0.917 17 C -0.146 4.146 18 N -0.536 5.536 19 Si 0.726 3.274 20 H -0.196 1.196 21 H -0.211 1.211 22 H -0.210 1.210 23 C -0.088 4.088 24 C -0.005 4.005 25 C -0.226 4.226 26 C -0.015 4.015 27 N -0.270 5.270 28 H 0.113 0.887 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.159 0.841 32 H 0.107 0.893 33 H 0.105 0.895 34 H 0.114 0.886 35 H 0.115 0.885 36 H 0.095 0.905 37 H 0.099 0.901 38 H 0.043 0.957 39 H 0.116 0.884 40 H 0.009 0.991 41 H 0.050 0.950 42 H 0.071 0.929 43 H 0.044 0.956 44 H 0.099 0.901 45 H 0.106 0.894 46 H 0.091 0.909 47 H 0.157 0.843 48 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -17.072 -9.592 16.818 25.813 hybrid contribution 0.133 0.966 -0.910 1.334 sum -16.939 -8.627 15.907 24.787 Atomic orbital electron populations 1.22850 0.77215 1.02924 1.02442 1.86241 1.22932 1.24634 1.87826 1.19822 0.89313 0.84701 0.92052 1.20973 0.91913 0.99227 1.08670 1.20149 0.96417 0.91963 0.92392 1.20390 0.88485 1.05202 0.96311 1.21641 0.92686 1.04841 0.98227 1.20523 0.89760 0.76140 0.83357 1.90671 1.70588 1.51164 1.30682 1.48256 1.07942 1.71799 1.06053 1.22137 0.95780 1.00575 0.83029 1.22414 0.90432 0.94858 1.00241 1.62073 1.04508 1.52894 1.06614 1.19738 0.95980 0.87586 0.89885 1.21164 1.33169 1.09290 0.91166 0.91750 1.25006 0.95273 0.94973 0.99391 1.69964 1.37822 1.14523 1.31322 0.86439 0.78486 0.78363 0.84107 1.19627 1.21115 1.20982 1.22412 1.00148 0.95619 0.90653 1.21767 0.78966 0.99317 1.00449 1.21957 0.94684 0.99655 1.06334 1.22390 0.92816 0.93584 0.92698 1.67305 1.41060 0.98887 1.19727 0.88651 0.92359 0.92270 0.84066 0.89319 0.89451 0.88588 0.88516 0.90470 0.90146 0.95663 0.88449 0.99091 0.94989 0.92897 0.95561 0.90058 0.89402 0.90940 0.84327 0.82310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.29 10.38 101.05 1.05 1.34 16 2 O -0.31 -3.13 10.48 -18.72 -0.20 -3.33 16 3 C 0.32 3.39 7.49 -17.12 -0.13 3.26 16 4 C -0.19 -1.79 9.75 -39.28 -0.38 -2.17 16 5 C 0.00 -0.01 5.17 -104.35 -0.54 -0.55 16 6 C -0.07 -0.61 4.68 -27.88 -0.13 -0.74 16 7 C -0.13 -1.29 4.05 -27.89 -0.11 -1.41 16 8 C 0.51 6.96 7.71 -10.99 -0.08 6.88 16 9 O -0.55 -9.11 15.43 5.56 0.09 -9.02 16 10 N -0.61 -8.62 3.00 -172.16 -0.52 -9.14 16 11 C 0.11 1.44 6.53 -3.36 -0.02 1.41 16 12 C 0.05 0.87 5.47 -3.46 -0.02 0.85 16 13 N -0.54 -10.82 4.62 -235.44 -1.09 -11.90 16 14 C 0.19 4.81 4.72 -4.98 -0.02 4.79 16 15 C -0.51 -13.63 8.41 -34.44 -0.29 -13.92 16 16 H 0.06 1.69 7.13 -52.49 -0.37 1.31 16 17 C 0.06 1.51 5.46 -17.82 -0.10 1.42 16 18 N -0.90 -25.98 13.29 55.43 0.74 -25.25 16 19 Si 0.90 20.91 29.54 -169.99 -5.02 15.89 16 20 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 23 C 0.04 0.71 5.62 -3.69 -0.02 0.69 16 24 C 0.12 1.77 6.60 -3.58 -0.02 1.75 16 25 C -0.21 -1.68 9.81 -39.43 -0.39 -2.06 16 26 C 0.14 1.18 11.18 -17.56 -0.20 0.99 16 27 N -0.55 -5.65 9.22 -13.33 -0.12 -5.78 16 28 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.41 8.10 -51.93 -0.42 -0.01 16 30 H 0.06 0.42 8.10 -51.93 -0.42 0.00 16 31 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 32 H 0.09 0.84 8.06 -51.93 -0.42 0.43 16 33 H 0.09 0.83 8.06 -51.93 -0.42 0.41 16 34 H 0.10 0.81 7.99 -51.93 -0.41 0.39 16 35 H 0.10 0.85 7.68 -51.93 -0.40 0.45 16 36 H 0.08 1.02 8.14 -51.92 -0.42 0.60 16 37 H 0.08 0.83 6.02 -51.93 -0.31 0.52 16 38 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.10 1.81 6.67 -51.93 -0.35 1.46 16 40 H -0.01 -0.24 8.12 -51.93 -0.42 -0.66 16 41 H 0.03 0.86 7.97 -51.93 -0.41 0.44 16 42 H 0.26 7.15 8.31 -40.82 -0.34 6.82 16 43 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 44 H 0.08 1.38 7.99 -51.93 -0.41 0.97 16 45 H 0.09 1.32 7.06 -51.93 -0.37 0.95 16 46 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 47 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 48 H 0.16 0.89 8.06 -52.49 -0.42 0.47 16 LS Contribution 392.05 15.07 5.91 5.91 Total: -1.00 -32.46 392.05 -9.28 -41.74 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -7.66 Total: -1.64 kcal Atomic # 6 Polarization: 3.93 SS G_CDS: -1.41 Total: 2.52 kcal Atomic # 7 Polarization: -51.08 SS G_CDS: -0.99 Total: -52.07 kcal Atomic # 8 Polarization: -12.24 SS G_CDS: -0.11 Total: -12.35 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -32.46 -9.28 -41.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001142232225.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.905 kcal (2) G-P(sol) polarization free energy of solvation -32.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds