Wall clock time and date at job start Tue Mar 31 2020 17:26:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35672 * 117.00001 * 2 1 4 4 C 1.38922 * 119.68842 * 179.97438 * 3 2 1 5 5 C 1.38373 * 119.11091 * 180.25516 * 4 3 2 6 6 C 1.50709 * 120.75398 * 179.72414 * 5 4 3 7 7 C 1.52994 * 109.47314 * 89.99675 * 6 5 4 8 8 C 1.50696 * 109.47313 * 179.97438 * 7 6 5 9 9 O 1.21276 * 120.00077 * 0.02562 * 8 7 6 10 10 N 1.34777 * 120.00076 * 179.97438 * 8 7 6 11 11 C 1.47079 * 120.87902 * 359.72598 * 10 8 7 12 12 C 1.53696 * 108.27603 * 128.75650 * 11 10 8 13 13 N 1.46897 * 109.25888 * 54.07773 * 12 11 10 14 14 C 1.46903 * 110.99845 * 172.60955 * 13 12 11 15 15 C 1.50697 * 109.47249 * 294.29855 * 14 13 12 16 16 H 1.08002 * 120.00074 * 0.02562 * 15 14 13 17 17 C 1.37877 * 120.00187 * 179.97438 * 15 14 13 18 18 N 1.31514 * 120.00039 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 120.00188 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.46798 * 0.02562 * 19 17 15 21 21 H 1.48494 * 109.47295 * 120.00225 * 19 17 15 22 22 H 1.48498 * 109.47373 * 240.00510 * 19 17 15 23 23 C 1.46892 * 111.27063 * 296.75783 * 13 12 11 24 24 C 1.47081 * 120.88318 * 180.02562 * 10 8 7 25 25 C 1.38825 * 118.48977 * 359.50586 * 5 4 3 26 26 C 1.38050 * 119.28846 * 0.51297 * 25 5 4 27 27 N 1.31966 * 120.82946 * 359.73156 * 26 25 5 28 28 H 1.09003 * 109.46976 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47291 * 300.00015 * 1 2 3 30 30 H 1.09001 * 109.47233 * 60.00612 * 1 2 3 31 31 H 1.08002 * 120.43904 * 359.97271 * 4 3 2 32 32 H 1.09001 * 109.46608 * 209.99946 * 6 5 4 33 33 H 1.08998 * 109.46962 * 329.99538 * 6 5 4 34 34 H 1.09002 * 109.47223 * 300.00447 * 7 6 5 35 35 H 1.09007 * 109.46962 * 60.00039 * 7 6 5 36 36 H 1.09008 * 109.62548 * 248.51606 * 11 10 8 37 37 H 1.08994 * 109.63475 * 9.10399 * 11 10 8 38 38 H 1.08995 * 109.64871 * 294.07308 * 12 11 10 39 39 H 1.09004 * 109.42056 * 173.94604 * 12 11 10 40 40 H 1.08995 * 109.47332 * 54.30413 * 14 13 12 41 41 H 1.09004 * 109.46961 * 174.30637 * 14 13 12 42 42 H 0.96998 * 120.00113 * 179.97438 * 18 17 15 43 43 H 1.09006 * 109.49482 * 303.14637 * 23 13 12 44 44 H 1.09005 * 109.49842 * 183.06586 * 23 13 12 45 45 H 1.09000 * 109.62293 * 350.89769 * 24 10 8 46 46 H 1.09000 * 109.62645 * 111.47570 * 24 10 8 47 47 H 1.07999 * 120.36223 * 180.26605 * 25 5 4 48 48 H 1.07997 * 119.58537 * 179.75177 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2088 0.0000 4 6 3.4326 1.2740 0.0005 5 6 4.0483 2.5132 0.0059 6 6 5.5511 2.6270 0.0129 7 6 6.0662 2.6684 -1.4271 8 6 7.5688 2.7829 -1.4201 9 8 8.1687 2.8265 -0.3670 10 7 8.2460 2.8357 -2.5842 11 6 7.5387 2.7772 -3.8724 12 6 8.0134 3.9560 -4.7369 13 7 9.4791 3.9278 -4.8318 14 6 9.9639 4.9306 -5.7896 15 6 9.5004 4.5660 -7.1764 16 1 8.9049 3.6784 -7.3308 17 6 9.8358 5.3662 -8.2480 18 7 10.5606 6.4474 -8.0599 19 14 9.2607 4.9147 -9.9670 20 1 8.4657 3.6617 -9.9097 21 1 8.4187 6.0102 -10.5110 22 1 10.4400 4.7133 -10.8466 23 6 10.1020 4.1136 -3.5146 24 6 9.7125 2.9469 -2.6000 25 6 3.2504 3.6492 0.0001 26 6 1.8769 3.5097 -0.0001 27 7 1.3186 2.3140 0.0000 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 4.0228 0.3695 0.0014 32 1 5.8438 3.5408 0.5300 33 1 5.9783 1.7659 0.5269 34 1 5.7734 1.7546 -1.9442 35 1 5.6390 3.5296 -1.9411 36 1 7.7674 1.8365 -4.3732 37 1 6.4645 2.8541 -3.7042 38 1 7.6963 4.8947 -4.2827 39 1 7.5826 3.8704 -5.7345 40 1 9.5696 5.9105 -5.5206 41 1 11.0533 4.9584 -5.7663 42 1 10.7969 7.0101 -8.8139 43 1 9.7559 5.0501 -3.0773 44 1 11.1860 4.1423 -3.6256 45 1 10.0762 3.1360 -1.5900 46 1 10.1457 2.0221 -2.9810 47 1 3.6991 4.6315 -0.0003 48 1 1.2516 4.3902 -0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001142232225.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:26:52 Heat of formation + Delta-G solvation = -55.267144 kcal Electronic energy + Delta-G solvation = -27911.957281 eV Core-core repulsion = 23966.251557 eV Total energy + Delta-G solvation = -3945.705724 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.66894 -41.16210 -39.16621 -38.83165 -35.96737 -35.67879 -34.40012 -32.55342 -31.75264 -31.32208 -29.95998 -28.22801 -27.43307 -25.95215 -24.60784 -24.36504 -23.73848 -22.51885 -21.71509 -19.77967 -18.95942 -18.48901 -18.17547 -17.96206 -17.02512 -16.91593 -16.84267 -16.67342 -16.64117 -15.99852 -15.59454 -15.47701 -15.31873 -15.15529 -14.82917 -14.66916 -14.37986 -14.12875 -13.80758 -13.68112 -13.41891 -13.21283 -13.00566 -12.96078 -12.74396 -12.63207 -12.59290 -12.38213 -12.28692 -12.11890 -12.09075 -11.97990 -11.76204 -11.26398 -10.90424 -10.63853 -10.62364 -10.52668 -9.75064 -9.48298 -9.05025 -8.20039 -6.30219 0.18625 0.26019 1.43260 1.44536 1.57385 1.60982 1.97647 2.16401 2.41317 2.78516 3.12711 3.23533 3.33669 3.45464 3.84577 3.93676 3.98709 4.03898 4.13298 4.18160 4.19522 4.24800 4.30426 4.39307 4.44115 4.45866 4.46903 4.50966 4.66869 4.73828 4.75066 4.79417 4.86056 4.90979 4.95648 4.97763 5.03335 5.12608 5.20569 5.24210 5.41769 5.46320 5.51583 5.64663 6.02935 6.24132 6.26511 6.45269 6.56928 6.86201 6.87686 7.13224 7.39899 8.91430 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014001 B = 0.002190 C = 0.002001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1999.391182 B =12782.069367 C =13992.619238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.324 6.324 3 C 0.300 3.700 4 C -0.195 4.195 5 C -0.002 4.002 6 C -0.058 4.058 7 C -0.127 4.127 8 C 0.514 3.486 9 O -0.584 6.584 10 N -0.613 5.613 11 C 0.120 3.880 12 C 0.048 3.952 13 N -0.540 5.540 14 C 0.207 3.793 15 C -0.518 4.518 16 H 0.070 0.930 17 C -0.001 4.001 18 N -0.936 5.936 19 Si 0.970 3.030 20 H -0.258 1.258 21 H -0.281 1.281 22 H -0.282 1.282 23 C 0.044 3.956 24 C 0.127 3.873 25 C -0.204 4.204 26 C 0.134 3.866 27 N -0.562 5.562 28 H 0.119 0.881 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.148 0.852 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.116 0.884 35 H 0.113 0.887 36 H 0.085 0.915 37 H 0.119 0.881 38 H 0.017 0.983 39 H 0.086 0.914 40 H -0.040 1.040 41 H 0.004 0.996 42 H 0.263 0.737 43 H 0.015 0.985 44 H 0.078 0.922 45 H 0.089 0.911 46 H 0.080 0.920 47 H 0.158 0.842 48 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.749 -10.135 16.340 26.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.232 6.232 3 C 0.122 3.878 4 C -0.215 4.215 5 C -0.010 4.010 6 C -0.096 4.096 7 C -0.166 4.166 8 C 0.304 3.696 9 O -0.464 6.464 10 N -0.346 5.346 11 C -0.003 4.003 12 C -0.081 4.081 13 N -0.265 5.265 14 C 0.081 3.919 15 C -0.557 4.557 16 H 0.088 0.912 17 C -0.199 4.199 18 N -0.577 5.577 19 Si 0.795 3.205 20 H -0.182 1.182 21 H -0.207 1.207 22 H -0.208 1.208 23 C -0.086 4.086 24 C 0.003 3.997 25 C -0.224 4.224 26 C -0.021 4.021 27 N -0.286 5.286 28 H 0.138 0.862 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.166 0.834 32 H 0.103 0.897 33 H 0.100 0.900 34 H 0.135 0.865 35 H 0.131 0.869 36 H 0.103 0.897 37 H 0.137 0.863 38 H 0.035 0.965 39 H 0.104 0.896 40 H -0.023 1.023 41 H 0.022 0.978 42 H 0.072 0.928 43 H 0.033 0.967 44 H 0.097 0.903 45 H 0.108 0.892 46 H 0.098 0.902 47 H 0.176 0.824 48 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -19.037 -10.799 16.629 27.487 hybrid contribution 0.739 1.378 -0.766 1.741 sum -18.298 -9.421 15.863 25.985 Atomic orbital electron populations 1.23015 0.75983 1.04473 1.02155 1.86215 1.24271 1.24773 1.87929 1.20059 0.89853 0.84970 0.92889 1.21112 0.91778 0.99864 1.08791 1.20126 0.96151 0.92072 0.92624 1.20277 0.88576 1.04786 0.95945 1.21672 0.89428 1.06516 0.99010 1.21173 0.91220 0.74821 0.82395 1.90662 1.71613 1.52435 1.31721 1.48349 1.07497 1.71948 1.06764 1.22124 0.97652 0.98671 0.81807 1.22480 0.88390 0.96604 1.00652 1.62004 1.06540 1.50714 1.07197 1.19386 0.94123 0.87376 0.91023 1.21479 1.32903 1.09317 0.91975 0.91173 1.25948 0.95304 0.94798 1.03841 1.70101 1.39187 1.15763 1.32656 0.85312 0.78029 0.78549 0.78588 1.18169 1.20656 1.20840 1.22435 0.99951 0.96441 0.89727 1.21588 0.80175 0.98247 0.99643 1.22205 0.94611 1.00290 1.05289 1.22880 0.93482 0.93793 0.91955 1.67332 1.41639 0.99460 1.20191 0.86246 0.92557 0.92587 0.83404 0.89731 0.90004 0.86544 0.86876 0.89657 0.86267 0.96469 0.89614 1.02263 0.97827 0.92778 0.96669 0.90316 0.89240 0.90161 0.82424 0.79791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.51 10.38 113.37 1.18 1.69 16 2 O -0.32 -6.31 10.48 -89.89 -0.94 -7.25 16 3 C 0.30 6.05 7.49 84.79 0.63 6.68 16 4 C -0.19 -3.43 9.75 22.47 0.22 -3.21 16 5 C 0.00 -0.03 5.17 -19.69 -0.10 -0.13 16 6 C -0.06 -0.93 4.68 29.85 0.14 -0.79 16 7 C -0.13 -2.04 4.05 29.84 0.12 -1.92 16 8 C 0.51 12.75 7.71 87.66 0.68 13.43 16 9 O -0.58 -18.43 15.43 -3.02 -0.05 -18.48 16 10 N -0.61 -16.11 3.00 -816.98 -2.45 -18.57 16 11 C 0.12 2.86 6.53 86.50 0.57 3.43 16 12 C 0.05 1.62 5.47 86.54 0.47 2.09 16 13 N -0.54 -21.95 4.62 -898.81 -4.15 -26.10 16 14 C 0.21 10.69 4.72 85.56 0.40 11.10 16 15 C -0.52 -28.01 8.41 25.60 0.22 -27.79 16 16 H 0.07 3.64 7.13 -2.91 -0.02 3.61 16 17 C 0.00 -0.06 5.46 84.65 0.46 0.40 16 18 N -0.94 -55.37 13.29 21.45 0.28 -55.08 16 19 Si 0.97 42.69 29.54 68.60 2.03 44.72 16 20 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 21 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 22 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 23 C 0.04 1.54 5.62 86.40 0.49 2.02 16 24 C 0.13 3.69 6.60 86.36 0.57 4.26 16 25 C -0.20 -2.80 9.81 22.37 0.22 -2.59 16 26 C 0.13 1.97 11.18 84.63 0.95 2.91 16 27 N -0.56 -10.87 9.22 -308.95 -2.85 -13.72 16 28 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.06 0.75 8.10 -2.39 -0.02 0.73 16 30 H 0.06 0.76 8.10 -2.39 -0.02 0.74 16 31 H 0.15 2.27 8.06 -2.91 -0.02 2.25 16 32 H 0.08 1.44 8.06 -2.39 -0.02 1.42 16 33 H 0.08 1.42 8.06 -2.39 -0.02 1.40 16 34 H 0.12 1.47 7.99 -2.39 -0.02 1.45 16 35 H 0.11 1.52 7.68 -2.38 -0.02 1.51 16 36 H 0.09 1.98 8.14 -2.38 -0.02 1.96 16 37 H 0.12 1.96 6.02 -2.39 -0.01 1.94 16 38 H 0.02 0.61 8.14 -2.39 -0.02 0.59 16 39 H 0.09 3.11 6.67 -2.38 -0.02 3.10 16 40 H -0.04 -2.29 8.12 -2.39 -0.02 -2.31 16 41 H 0.00 0.20 7.97 -2.38 -0.02 0.18 16 42 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 43 H 0.02 0.56 8.14 -2.38 -0.02 0.54 16 44 H 0.08 2.76 7.99 -2.38 -0.02 2.74 16 45 H 0.09 2.61 7.06 -2.39 -0.02 2.60 16 46 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 47 H 0.16 1.52 8.06 -2.91 -0.02 1.49 16 48 H 0.19 1.58 8.06 -2.91 -0.02 1.56 16 Total: -1.00 -71.38 392.05 0.02 -71.36 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: 0.94 Total: 11.55 kcal Atomic # 6 Polarization: 4.36 SS G_CDS: 7.21 Total: 11.57 kcal Atomic # 7 Polarization: -104.30 SS G_CDS: -9.17 Total: -113.47 kcal Atomic # 8 Polarization: -24.74 SS G_CDS: -0.99 Total: -25.73 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.72 kcal Total: -71.38 0.02 -71.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001142232225.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.094 kcal (2) G-P(sol) polarization free energy of solvation -71.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds