Wall clock time and date at job start Tue Mar 31 2020 17:52:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42906 * 113.99400 * 2 1 4 4 C 1.53008 * 109.46709 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.46557 * 183.52957 * 4 3 2 6 6 N 1.46504 * 109.46552 * 300.46237 * 5 4 3 7 7 C 1.34777 * 119.99770 * 301.75918 * 6 5 4 8 8 O 1.21549 * 120.00207 * 354.86632 * 7 6 5 9 9 C 1.47843 * 119.99812 * 175.13767 * 7 6 5 10 10 C 1.40018 * 120.55722 * 180.02562 * 9 7 6 11 11 C 1.38360 * 118.28517 * 180.02562 * 10 9 7 12 12 C 1.38344 * 119.30844 * 0.02562 * 11 10 9 13 13 N 1.31938 * 121.07648 * 359.97438 * 12 11 10 14 14 C 1.31698 * 121.87525 * 359.70148 * 13 12 11 15 15 C 1.53039 * 109.45036 * 60.43512 * 5 4 3 16 16 C 1.53190 * 109.31347 * 181.37625 * 15 5 4 17 17 N 1.46927 * 108.77498 * 305.36038 * 16 15 5 18 18 C 1.36941 * 120.63206 * 233.58601 * 17 16 15 19 19 H 1.07995 * 119.99710 * 160.02409 * 18 17 16 20 20 C 1.38810 * 119.99668 * 340.02364 * 18 17 16 21 21 N 1.31623 * 120.00442 * 327.75969 * 20 18 17 22 22 Si 1.86808 * 119.99758 * 147.76033 * 20 18 17 23 23 H 1.48497 * 109.47052 * 94.99377 * 22 20 18 24 24 H 1.48501 * 109.47000 * 214.99918 * 22 20 18 25 25 H 1.48506 * 109.46723 * 334.99694 * 22 20 18 26 26 C 1.46924 * 118.73757 * 53.61449 * 17 16 15 27 27 C 1.53043 * 109.45981 * 180.49225 * 5 4 3 28 28 H 1.08993 * 109.47160 * 299.99998 * 1 2 3 29 29 H 1.08995 * 109.47449 * 60.00408 * 1 2 3 30 30 H 1.09007 * 109.46404 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47591 * 60.00123 * 3 2 1 32 32 H 1.09005 * 109.47173 * 299.99515 * 3 2 1 33 33 H 1.09005 * 109.46932 * 63.53596 * 4 3 2 34 34 H 1.08993 * 109.47262 * 303.53099 * 4 3 2 35 35 H 0.96994 * 119.99641 * 121.75457 * 6 5 4 36 36 H 1.07999 * 120.85907 * 359.97438 * 10 9 7 37 37 H 1.08004 * 120.34414 * 180.02562 * 11 10 9 38 38 H 1.07994 * 119.46514 * 179.97438 * 12 11 10 39 39 H 1.07997 * 119.70982 * 180.29151 * 14 13 12 40 40 H 1.09004 * 109.49029 * 301.32132 * 15 5 4 41 41 H 1.08993 * 109.50185 * 61.42197 * 15 5 4 42 42 H 1.09002 * 109.58770 * 185.57474 * 16 15 5 43 43 H 1.09005 * 109.58863 * 65.14884 * 16 15 5 44 44 H 0.96997 * 119.99595 * 179.97438 * 21 20 18 45 45 H 1.09004 * 109.58704 * 186.60414 * 26 17 16 46 46 H 1.08994 * 109.71032 * 66.24365 * 26 17 16 47 47 H 1.09003 * 109.49462 * 298.58182 * 27 5 4 48 48 H 1.09004 * 109.49882 * 58.67555 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 6 3.5354 1.1848 0.0006 5 6 4.1573 2.5799 0.0895 6 7 3.7222 3.3822 -1.0565 7 6 3.9769 2.9595 -2.3107 8 8 4.6479 1.9622 -2.4914 9 6 3.4453 3.7122 -3.4668 10 6 3.7024 3.2833 -4.7746 11 6 3.1824 4.0235 -5.8215 12 6 2.4328 5.1530 -5.5455 13 7 2.2068 5.5335 -4.3026 14 6 2.6748 4.8590 -3.2728 15 6 3.7073 3.2568 1.3861 16 6 4.3038 4.6661 1.4554 17 7 5.7616 4.5707 1.2991 18 6 6.6008 5.1340 2.2231 19 1 7.6263 4.8028 2.2938 20 6 6.1333 6.1306 3.0687 21 7 5.2062 6.9665 2.6513 22 14 6.8200 6.2854 4.7990 23 1 7.9184 7.2848 4.8080 24 1 5.7427 6.7254 5.7216 25 1 7.3448 4.9690 5.2429 26 6 6.3020 3.8600 0.1322 27 6 5.6829 2.4597 0.0777 28 1 -0.3633 0.5138 0.8899 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3632 -1.0278 0.0005 31 1 1.6885 1.8465 0.8899 32 1 1.6885 1.8465 -0.8901 33 1 3.8618 0.6994 -0.9192 34 1 3.8525 0.5904 0.8575 35 1 3.2507 4.2176 -0.9126 36 1 4.2921 2.3979 -4.9614 37 1 3.3598 3.7225 -6.8435 38 1 2.0261 5.7329 -6.3608 39 1 2.4645 5.1994 -2.2697 40 1 2.6193 3.3211 1.4042 41 1 4.0520 2.6734 2.2398 42 1 4.0685 5.1155 2.4202 43 1 3.8897 5.2781 0.6541 44 1 4.8793 7.6626 3.2425 45 1 7.3850 3.7774 0.2239 46 1 6.0529 4.4052 -0.7781 47 1 6.0091 1.8838 0.9438 48 1 6.0013 1.9565 -0.8353 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001150896157.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:52:22 Heat of formation + Delta-G solvation = -15.925548 kcal Electronic energy + Delta-G solvation = -30187.681441 eV Core-core repulsion = 26243.681696 eV Total energy + Delta-G solvation = -3943.999745 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -40.87789 -39.73840 -37.85602 -37.28165 -34.65836 -32.83889 -32.56507 -31.66297 -30.86256 -30.05765 -28.98514 -26.56794 -25.09734 -24.50853 -23.64718 -23.13364 -22.25415 -21.12727 -20.34412 -18.82370 -18.19312 -16.97476 -16.82559 -16.49408 -16.17038 -15.97784 -15.14187 -15.03668 -14.94195 -14.74063 -14.38706 -13.98488 -13.80198 -13.77797 -13.53717 -13.30585 -13.14318 -13.01012 -12.69744 -12.45538 -12.25974 -11.75908 -11.54271 -11.41567 -11.22127 -11.06968 -10.99690 -10.69713 -10.46542 -10.38241 -10.12305 -10.08104 -9.89954 -9.81340 -9.65307 -9.51231 -9.37352 -9.19327 -8.75968 -8.40047 -6.85386 -5.89337 -3.12113 0.52785 1.03748 2.91509 3.25533 3.36518 3.46173 3.50626 3.74826 3.78527 4.14134 4.50215 4.58984 4.67791 4.74403 4.84744 5.02691 5.13864 5.20824 5.21441 5.24794 5.30148 5.33199 5.42262 5.42729 5.48609 5.54334 5.57421 5.71443 5.84496 5.91932 6.01876 6.11183 6.18453 6.22552 6.32085 6.36969 6.43336 6.53713 6.60020 6.75941 6.86446 6.95806 7.16042 7.17661 7.39191 7.67114 7.71514 7.80680 8.32092 8.34428 9.12978 9.81604 10.35737 11.20006 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.009933 B = 0.004174 C = 0.003371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2818.181460 B = 6707.226495 C = 8303.701520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.393 6.393 3 C 0.064 3.936 4 C -0.129 4.129 5 C 0.194 3.806 6 N -0.705 5.705 7 C 0.564 3.436 8 O -0.532 6.532 9 C -0.181 4.181 10 C -0.019 4.019 11 C -0.182 4.182 12 C 0.116 3.884 13 N -0.487 5.487 14 C 0.136 3.864 15 C -0.149 4.149 16 C 0.169 3.831 17 N -0.589 5.589 18 C -0.257 4.257 19 H 0.069 0.931 20 C 0.006 3.994 21 N -0.888 5.888 22 Si 0.883 3.117 23 H -0.289 1.289 24 H -0.289 1.289 25 H -0.279 1.279 26 C 0.152 3.848 27 C -0.142 4.142 28 H 0.040 0.960 29 H 0.037 0.963 30 H 0.082 0.918 31 H 0.053 0.947 32 H 0.043 0.957 33 H 0.088 0.912 34 H 0.078 0.922 35 H 0.400 0.600 36 H 0.147 0.853 37 H 0.141 0.859 38 H 0.159 0.841 39 H 0.159 0.841 40 H 0.057 0.943 41 H 0.077 0.923 42 H 0.087 0.913 43 H 0.015 0.985 44 H 0.253 0.747 45 H 0.053 0.947 46 H 0.015 0.985 47 H 0.067 0.933 48 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.773 -8.481 -12.781 18.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.312 6.312 3 C -0.012 4.012 4 C -0.167 4.167 5 C 0.109 3.891 6 N -0.357 5.357 7 C 0.350 3.650 8 O -0.410 6.410 9 C -0.187 4.187 10 C -0.046 4.046 11 C -0.202 4.202 12 C -0.041 4.041 13 N -0.195 5.195 14 C -0.023 4.023 15 C -0.188 4.188 16 C 0.043 3.957 17 N -0.312 5.312 18 C -0.386 4.386 19 H 0.087 0.913 20 C -0.193 4.193 21 N -0.532 5.532 22 Si 0.712 3.288 23 H -0.216 1.216 24 H -0.216 1.216 25 H -0.204 1.204 26 C 0.025 3.975 27 C -0.182 4.182 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.101 0.899 31 H 0.071 0.929 32 H 0.061 0.939 33 H 0.106 0.894 34 H 0.096 0.904 35 H 0.236 0.764 36 H 0.165 0.835 37 H 0.158 0.842 38 H 0.176 0.824 39 H 0.176 0.824 40 H 0.076 0.924 41 H 0.096 0.904 42 H 0.106 0.894 43 H 0.033 0.967 44 H 0.063 0.937 45 H 0.071 0.929 46 H 0.033 0.967 47 H 0.085 0.915 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -9.745 -8.463 -12.640 18.065 hybrid contribution 0.300 0.187 0.815 0.888 sum -9.444 -8.276 -11.825 17.249 Atomic orbital electron populations 1.22694 0.81568 1.02356 0.99810 1.87870 1.19262 1.28683 1.95400 1.22622 0.94578 0.84062 0.99977 1.21955 0.92550 0.97563 1.04623 1.20254 0.95104 0.88713 0.85033 1.46108 1.58830 1.25652 1.05076 1.17933 0.80043 0.84355 0.82705 1.90704 1.38396 1.26377 1.85517 1.21158 1.03215 0.99005 0.95277 1.21744 0.93891 0.98109 0.90819 1.22156 1.00366 0.97246 1.00446 1.22997 0.93327 0.93581 0.94197 1.67725 1.21107 1.31053 0.99599 1.23061 0.90992 0.89667 0.98554 1.22589 0.99400 1.01360 0.95473 1.20735 0.83398 0.90036 1.01572 1.44144 1.01265 1.62424 1.23359 1.19141 0.95023 1.14560 1.09863 0.91312 1.24704 0.99446 0.95110 1.00052 1.70243 1.33284 1.15480 1.34191 0.86577 0.78155 0.77810 0.86258 1.21618 1.21557 1.20435 1.20801 0.96611 0.90184 0.89882 1.22406 0.93138 1.00244 1.02371 0.94153 0.94420 0.89935 0.92905 0.93898 0.89372 0.90385 0.76357 0.83548 0.84162 0.82370 0.82356 0.92409 0.90438 0.89449 0.96723 0.93709 0.92876 0.96714 0.91451 0.90498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 101.05 1.11 1.45 16 2 O -0.39 -5.53 10.70 -35.23 -0.38 -5.91 16 3 C 0.06 0.87 5.48 37.16 0.20 1.07 16 4 C -0.13 -1.92 4.39 -26.73 -0.12 -2.03 16 5 C 0.19 3.07 0.35 -131.78 -0.05 3.02 16 6 N -0.71 -10.31 3.35 -48.50 -0.16 -10.47 16 7 C 0.56 8.43 7.19 -12.33 -0.09 8.34 16 8 O -0.53 -9.15 12.67 5.32 0.07 -9.08 16 9 C -0.18 -2.35 5.89 -104.82 -0.62 -2.96 16 10 C -0.02 -0.21 9.72 -38.87 -0.38 -0.59 16 11 C -0.18 -1.62 10.10 -39.50 -0.40 -2.02 16 12 C 0.12 1.12 11.17 -17.47 -0.20 0.92 16 13 N -0.49 -6.01 10.35 -12.91 -0.13 -6.14 16 14 C 0.14 1.68 10.71 -17.13 -0.18 1.50 16 15 C -0.15 -2.50 4.66 -26.61 -0.12 -2.63 16 16 C 0.17 3.61 5.24 -3.71 -0.02 3.59 16 17 N -0.59 -13.94 3.02 -172.32 -0.52 -14.46 16 18 C -0.26 -6.87 9.55 -15.06 -0.14 -7.01 16 19 H 0.07 1.84 7.95 -52.49 -0.42 1.42 16 20 C 0.01 0.16 4.56 -17.43 -0.08 0.08 16 21 N -0.89 -24.82 11.68 55.49 0.65 -24.17 16 22 Si 0.88 21.08 29.66 -169.99 -5.04 16.04 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 24 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 25 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 26 C 0.15 3.15 6.26 -3.71 -0.02 3.13 16 27 C -0.14 -2.53 4.69 -26.61 -0.12 -2.65 16 28 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.04 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.05 0.68 6.23 -51.93 -0.32 0.36 16 32 H 0.04 0.57 7.71 -51.93 -0.40 0.17 16 33 H 0.09 1.46 6.23 -51.93 -0.32 1.13 16 34 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.40 5.49 5.30 -40.82 -0.22 5.28 16 36 H 0.15 1.56 7.74 -52.49 -0.41 1.15 16 37 H 0.14 0.81 8.06 -52.48 -0.42 0.39 16 38 H 0.16 1.02 8.06 -52.49 -0.42 0.60 16 39 H 0.16 1.77 6.44 -52.49 -0.34 1.44 16 40 H 0.06 0.84 6.29 -51.93 -0.33 0.51 16 41 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 42 H 0.09 2.14 5.95 -51.93 -0.31 1.83 16 43 H 0.01 0.32 6.90 -51.93 -0.36 -0.04 16 44 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16 45 H 0.05 1.12 7.89 -51.93 -0.41 0.71 16 46 H 0.01 0.32 7.74 -51.93 -0.40 -0.08 16 47 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 48 H 0.08 1.39 6.16 -51.93 -0.32 1.07 16 LS Contribution 375.50 15.07 5.66 5.66 Total: -1.00 -31.43 375.50 -8.15 -39.58 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -7.07 Total: 5.78 kcal Atomic # 6 Polarization: 4.42 SS G_CDS: -1.22 Total: 3.19 kcal Atomic # 7 Polarization: -55.08 SS G_CDS: -0.17 Total: -55.25 kcal Atomic # 8 Polarization: -14.69 SS G_CDS: -0.31 Total: -15.00 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.04 Total: 16.04 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.43 -8.15 -39.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150896157.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.655 kcal (2) G-P(sol) polarization free energy of solvation -31.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds