Wall clock time and date at job start Tue Mar 31 2020 17:52:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42906 * 113.99400 * 2 1 4 4 C 1.53008 * 109.46709 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.46557 * 183.52957 * 4 3 2 6 6 N 1.46504 * 109.46552 * 300.46237 * 5 4 3 7 7 C 1.34777 * 119.99770 * 301.75918 * 6 5 4 8 8 O 1.21549 * 120.00207 * 354.86632 * 7 6 5 9 9 C 1.47843 * 119.99812 * 175.13767 * 7 6 5 10 10 C 1.40018 * 120.55722 * 180.02562 * 9 7 6 11 11 C 1.38360 * 118.28517 * 180.02562 * 10 9 7 12 12 C 1.38344 * 119.30844 * 0.02562 * 11 10 9 13 13 N 1.31938 * 121.07648 * 359.97438 * 12 11 10 14 14 C 1.31698 * 121.87525 * 359.70148 * 13 12 11 15 15 C 1.53039 * 109.45036 * 60.43512 * 5 4 3 16 16 C 1.53190 * 109.31347 * 181.37625 * 15 5 4 17 17 N 1.46927 * 108.77498 * 305.36038 * 16 15 5 18 18 C 1.36941 * 120.63206 * 233.58601 * 17 16 15 19 19 H 1.07995 * 119.99710 * 160.02409 * 18 17 16 20 20 C 1.38810 * 119.99668 * 340.02364 * 18 17 16 21 21 N 1.31623 * 120.00442 * 327.75969 * 20 18 17 22 22 Si 1.86808 * 119.99758 * 147.76033 * 20 18 17 23 23 H 1.48497 * 109.47052 * 94.99377 * 22 20 18 24 24 H 1.48501 * 109.47000 * 214.99918 * 22 20 18 25 25 H 1.48506 * 109.46723 * 334.99694 * 22 20 18 26 26 C 1.46924 * 118.73757 * 53.61449 * 17 16 15 27 27 C 1.53043 * 109.45981 * 180.49225 * 5 4 3 28 28 H 1.08993 * 109.47160 * 299.99998 * 1 2 3 29 29 H 1.08995 * 109.47449 * 60.00408 * 1 2 3 30 30 H 1.09007 * 109.46404 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47591 * 60.00123 * 3 2 1 32 32 H 1.09005 * 109.47173 * 299.99515 * 3 2 1 33 33 H 1.09005 * 109.46932 * 63.53596 * 4 3 2 34 34 H 1.08993 * 109.47262 * 303.53099 * 4 3 2 35 35 H 0.96994 * 119.99641 * 121.75457 * 6 5 4 36 36 H 1.07999 * 120.85907 * 359.97438 * 10 9 7 37 37 H 1.08004 * 120.34414 * 180.02562 * 11 10 9 38 38 H 1.07994 * 119.46514 * 179.97438 * 12 11 10 39 39 H 1.07997 * 119.70982 * 180.29151 * 14 13 12 40 40 H 1.09004 * 109.49029 * 301.32132 * 15 5 4 41 41 H 1.08993 * 109.50185 * 61.42197 * 15 5 4 42 42 H 1.09002 * 109.58770 * 185.57474 * 16 15 5 43 43 H 1.09005 * 109.58863 * 65.14884 * 16 15 5 44 44 H 0.96997 * 119.99595 * 179.97438 * 21 20 18 45 45 H 1.09004 * 109.58704 * 186.60414 * 26 17 16 46 46 H 1.08994 * 109.71032 * 66.24365 * 26 17 16 47 47 H 1.09003 * 109.49462 * 298.58182 * 27 5 4 48 48 H 1.09004 * 109.49882 * 58.67555 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 6 3.5354 1.1848 0.0006 5 6 4.1573 2.5799 0.0895 6 7 3.7222 3.3822 -1.0565 7 6 3.9769 2.9595 -2.3107 8 8 4.6479 1.9622 -2.4914 9 6 3.4453 3.7122 -3.4668 10 6 3.7024 3.2833 -4.7746 11 6 3.1824 4.0235 -5.8215 12 6 2.4328 5.1530 -5.5455 13 7 2.2068 5.5335 -4.3026 14 6 2.6748 4.8590 -3.2728 15 6 3.7073 3.2568 1.3861 16 6 4.3038 4.6661 1.4554 17 7 5.7616 4.5707 1.2991 18 6 6.6008 5.1340 2.2231 19 1 7.6263 4.8028 2.2938 20 6 6.1333 6.1306 3.0687 21 7 5.2062 6.9665 2.6513 22 14 6.8200 6.2854 4.7990 23 1 7.9184 7.2848 4.8080 24 1 5.7427 6.7254 5.7216 25 1 7.3448 4.9690 5.2429 26 6 6.3020 3.8600 0.1322 27 6 5.6829 2.4597 0.0777 28 1 -0.3633 0.5138 0.8899 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3632 -1.0278 0.0005 31 1 1.6885 1.8465 0.8899 32 1 1.6885 1.8465 -0.8901 33 1 3.8618 0.6994 -0.9192 34 1 3.8525 0.5904 0.8575 35 1 3.2507 4.2176 -0.9126 36 1 4.2921 2.3979 -4.9614 37 1 3.3598 3.7225 -6.8435 38 1 2.0261 5.7329 -6.3608 39 1 2.4645 5.1994 -2.2697 40 1 2.6193 3.3211 1.4042 41 1 4.0520 2.6734 2.2398 42 1 4.0685 5.1155 2.4202 43 1 3.8897 5.2781 0.6541 44 1 4.8793 7.6626 3.2425 45 1 7.3850 3.7774 0.2239 46 1 6.0529 4.4052 -0.7781 47 1 6.0091 1.8838 0.9438 48 1 6.0013 1.9565 -0.8353 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001150896157.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:52:21 Heat of formation + Delta-G solvation = -35.753839 kcal Electronic energy + Delta-G solvation = -30188.541260 eV Core-core repulsion = 26243.681696 eV Total energy + Delta-G solvation = -3944.859564 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.00257 -40.77685 -38.96629 -38.59711 -36.26593 -34.06276 -33.52020 -33.29992 -31.89277 -31.60053 -30.48575 -27.69309 -26.47130 -25.63023 -24.64021 -24.50034 -23.79807 -22.30886 -21.80444 -20.21465 -19.30271 -18.67205 -17.75055 -17.53062 -17.18767 -17.03857 -16.67546 -16.25885 -16.11018 -15.96650 -15.73717 -15.39569 -15.29803 -14.99497 -14.75657 -14.62706 -14.27305 -14.12003 -13.98051 -13.86469 -13.29524 -13.16320 -13.06036 -12.89410 -12.67582 -12.54366 -12.32507 -12.23154 -12.14171 -12.01010 -11.72702 -11.49766 -11.32045 -10.94915 -10.87003 -10.58593 -10.44277 -10.36149 -10.25521 -9.97669 -8.79890 -7.93501 -5.18007 -0.35775 0.20836 1.45252 1.50695 1.60281 1.85543 2.10357 2.53697 2.77319 2.86443 3.18390 3.30015 3.64347 3.67224 3.80657 3.83213 3.90420 3.98196 4.05998 4.08860 4.15016 4.30470 4.40343 4.46603 4.51084 4.51450 4.55529 4.63769 4.65796 4.73474 4.80515 4.84015 4.95453 4.97217 5.01710 5.09774 5.11434 5.15578 5.24929 5.28685 5.42367 5.56873 5.60128 5.65239 5.72899 6.21901 6.32666 6.52824 6.84831 7.12959 7.17446 7.86871 8.37015 9.13802 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.009933 B = 0.004174 C = 0.003371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2818.181460 B = 6707.226495 C = 8303.701520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.416 6.416 3 C 0.070 3.930 4 C -0.119 4.119 5 C 0.202 3.798 6 N -0.703 5.703 7 C 0.565 3.435 8 O -0.558 6.558 9 C -0.200 4.200 10 C -0.029 4.029 11 C -0.168 4.168 12 C 0.116 3.884 13 N -0.510 5.510 14 C 0.128 3.872 15 C -0.134 4.134 16 C 0.174 3.826 17 N -0.603 5.603 18 C -0.270 4.270 19 H 0.061 0.939 20 C -0.036 4.036 21 N -0.916 5.916 22 Si 0.944 3.056 23 H -0.291 1.291 24 H -0.289 1.289 25 H -0.275 1.275 26 C 0.154 3.846 27 C -0.130 4.130 28 H 0.051 0.949 29 H 0.045 0.955 30 H 0.099 0.901 31 H 0.062 0.938 32 H 0.045 0.955 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.404 0.596 36 H 0.149 0.851 37 H 0.179 0.821 38 H 0.194 0.806 39 H 0.161 0.839 40 H 0.086 0.914 41 H 0.073 0.927 42 H 0.056 0.944 43 H 0.011 0.989 44 H 0.251 0.749 45 H 0.043 0.957 46 H 0.007 0.993 47 H 0.065 0.935 48 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.081 -9.105 -13.935 19.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.335 6.335 3 C -0.006 4.006 4 C -0.157 4.157 5 C 0.116 3.884 6 N -0.354 5.354 7 C 0.352 3.648 8 O -0.439 6.439 9 C -0.205 4.205 10 C -0.055 4.055 11 C -0.187 4.187 12 C -0.040 4.040 13 N -0.219 5.219 14 C -0.030 4.030 15 C -0.173 4.173 16 C 0.049 3.951 17 N -0.326 5.326 18 C -0.400 4.400 19 H 0.079 0.921 20 C -0.233 4.233 21 N -0.561 5.561 22 Si 0.773 3.227 23 H -0.218 1.218 24 H -0.215 1.215 25 H -0.200 1.200 26 C 0.029 3.971 27 C -0.170 4.170 28 H 0.069 0.931 29 H 0.063 0.937 30 H 0.117 0.883 31 H 0.080 0.920 32 H 0.063 0.937 33 H 0.091 0.909 34 H 0.097 0.903 35 H 0.242 0.758 36 H 0.166 0.834 37 H 0.196 0.804 38 H 0.211 0.789 39 H 0.178 0.822 40 H 0.104 0.896 41 H 0.092 0.908 42 H 0.075 0.925 43 H 0.028 0.972 44 H 0.060 0.940 45 H 0.061 0.939 46 H 0.025 0.975 47 H 0.084 0.916 48 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -11.065 -9.098 -13.801 19.892 hybrid contribution 0.709 0.403 1.031 1.315 sum -10.356 -8.695 -12.770 18.599 Atomic orbital electron populations 1.22918 0.79618 1.03823 1.00696 1.87830 1.21429 1.28716 1.95566 1.22511 0.93365 0.84286 1.00473 1.21786 0.93824 0.96262 1.03829 1.20060 0.93710 0.89578 0.85052 1.46037 1.58802 1.25706 1.04887 1.18240 0.79405 0.84024 0.83104 1.90683 1.39691 1.27591 1.85888 1.21035 1.04656 0.99612 0.95183 1.21953 0.94179 0.98607 0.90803 1.22528 0.98554 0.96055 1.01551 1.23655 0.92455 0.93823 0.94077 1.67763 1.21899 1.31612 1.00624 1.23091 0.91197 0.89649 0.99052 1.22396 1.00812 0.98210 0.95861 1.20634 0.82438 0.92437 0.99639 1.44358 1.02048 1.62434 1.23804 1.19375 0.95350 1.14468 1.10784 0.92076 1.25304 1.00331 0.95029 1.02638 1.70324 1.34750 1.16080 1.34951 0.85631 0.77288 0.77585 0.82227 1.21791 1.21531 1.20022 1.20807 0.96251 0.91460 0.88613 1.22244 0.94670 0.97928 1.02173 0.93083 0.93674 0.88303 0.91974 0.93710 0.90881 0.90298 0.75826 0.83371 0.80408 0.78937 0.82187 0.89553 0.90834 0.92527 0.97155 0.93956 0.93872 0.97480 0.91599 0.90618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 113.37 1.25 1.72 16 2 O -0.42 -11.03 10.70 -148.98 -1.59 -12.62 16 3 C 0.07 1.79 5.48 71.98 0.39 2.18 16 4 C -0.12 -3.44 4.39 30.60 0.13 -3.30 16 5 C 0.20 6.29 0.35 3.63 0.00 6.30 16 6 N -0.70 -20.46 3.35 -425.64 -1.43 -21.88 16 7 C 0.56 16.88 7.19 86.79 0.62 17.51 16 8 O -0.56 -19.32 12.67 -3.87 -0.05 -19.37 16 9 C -0.20 -5.07 5.89 -20.00 -0.12 -5.19 16 10 C -0.03 -0.61 9.72 22.73 0.22 -0.39 16 11 C -0.17 -2.49 10.10 22.32 0.23 -2.26 16 12 C 0.12 1.91 11.17 84.70 0.95 2.86 16 13 N -0.51 -11.85 10.35 -194.76 -2.02 -13.87 16 14 C 0.13 3.11 10.71 85.02 0.91 4.02 16 15 C -0.13 -4.41 4.66 30.67 0.14 -4.26 16 16 C 0.17 7.53 5.24 86.36 0.45 7.99 16 17 N -0.60 -29.08 3.02 -699.10 -2.11 -31.19 16 18 C -0.27 -14.68 9.55 84.03 0.80 -13.88 16 19 H 0.06 3.34 7.95 -2.91 -0.02 3.32 16 20 C -0.04 -1.97 4.56 84.86 0.39 -1.58 16 21 N -0.92 -52.01 11.68 21.65 0.25 -51.76 16 22 Si 0.94 43.90 29.66 68.60 2.03 45.93 16 23 H -0.29 -13.51 7.11 99.48 0.71 -12.81 16 24 H -0.29 -13.33 7.11 99.48 0.71 -12.63 16 25 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 26 C 0.15 6.56 6.26 86.36 0.54 7.10 16 27 C -0.13 -4.68 4.69 30.67 0.14 -4.54 16 28 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.10 1.47 8.14 -2.38 -0.02 1.45 16 31 H 0.06 1.46 6.23 -2.39 -0.01 1.45 16 32 H 0.04 1.13 7.71 -2.38 -0.02 1.11 16 33 H 0.07 2.39 6.23 -2.38 -0.01 2.37 16 34 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 35 H 0.40 11.08 5.30 -92.71 -0.49 10.59 16 36 H 0.15 3.01 7.74 -2.91 -0.02 2.98 16 37 H 0.18 1.27 8.06 -2.91 -0.02 1.24 16 38 H 0.19 1.72 8.06 -2.91 -0.02 1.69 16 39 H 0.16 3.61 6.44 -2.91 -0.02 3.59 16 40 H 0.09 2.37 6.29 -2.38 -0.02 2.35 16 41 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 42 H 0.06 2.81 5.95 -2.39 -0.01 2.80 16 43 H 0.01 0.46 6.90 -2.38 -0.02 0.44 16 44 H 0.25 13.81 8.31 -92.71 -0.77 13.04 16 45 H 0.04 1.87 7.89 -2.39 -0.02 1.85 16 46 H 0.01 0.32 7.74 -2.39 -0.02 0.30 16 47 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 48 H 0.08 2.77 6.16 -2.38 -0.01 2.75 16 Total: -1.00 -68.37 375.50 2.63 -65.74 By element: Atomic # 1 Polarization: 24.28 SS G_CDS: 0.49 Total: 24.76 kcal Atomic # 6 Polarization: 7.20 SS G_CDS: 7.06 Total: 14.26 kcal Atomic # 7 Polarization: -113.40 SS G_CDS: -5.30 Total: -118.70 kcal Atomic # 8 Polarization: -30.34 SS G_CDS: -1.64 Total: -31.99 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.93 kcal Total: -68.37 2.63 -65.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150896157.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.983 kcal (2) G-P(sol) polarization free energy of solvation -68.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds