Wall clock time and date at job start Tue Mar 31 2020 17:22:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34772 * 120.00359 * 2 1 4 4 O 1.21282 * 119.99523 * 0.27130 * 3 2 1 5 5 C 1.50700 * 120.00106 * 180.02562 * 3 2 1 6 6 H 1.08999 * 109.47177 * 59.99822 * 5 3 2 7 7 C 1.53001 * 109.46790 * 299.99880 * 5 3 2 8 8 C 1.53001 * 109.46930 * 175.00209 * 7 5 3 9 9 C 1.52994 * 109.47169 * 180.02562 * 8 7 5 10 10 C 1.53001 * 109.47169 * 180.02562 * 9 8 7 11 11 N 1.46908 * 109.47095 * 179.97438 * 10 9 8 12 12 N 1.46494 * 109.47153 * 179.97438 * 5 3 2 13 13 C 1.34775 * 120.00202 * 275.00003 * 12 5 3 14 14 O 1.21551 * 120.00089 * 359.97438 * 13 12 5 15 15 C 1.47892 * 120.00092 * 180.02562 * 13 12 5 16 16 C 1.39908 * 120.02413 * 359.72509 * 15 13 12 17 17 C 1.38333 * 120.35907 * 179.71538 * 16 15 13 18 18 C 1.37755 * 120.40606 * 0.56060 * 17 16 15 19 19 C 1.40746 * 120.04049 * 359.72227 * 18 17 16 20 20 C 1.41439 * 120.17407 * 180.02562 * 19 18 17 21 21 H 1.08009 * 119.99812 * 150.17610 * 20 19 18 22 22 C 1.39936 * 120.00286 * 330.17923 * 20 19 18 23 23 N 1.30831 * 119.99922 * 161.73002 * 22 20 19 24 24 Si 1.86804 * 119.99940 * 341.72625 * 22 20 19 25 25 H 1.48502 * 109.46590 * 95.41660 * 24 22 20 26 26 H 1.48497 * 109.46998 * 215.41498 * 24 22 20 27 27 H 1.48500 * 109.46872 * 335.41727 * 24 22 20 28 28 C 1.39000 * 120.02301 * 180.02562 * 15 13 12 29 29 H 1.08994 * 109.47687 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46796 * 300.00594 * 1 2 3 31 31 H 1.09002 * 109.47115 * 59.99748 * 1 2 3 32 32 H 0.96998 * 119.99542 * 179.97438 * 2 1 3 33 33 H 1.08999 * 109.47032 * 294.99661 * 7 5 3 34 34 H 1.08999 * 109.47400 * 54.99968 * 7 5 3 35 35 H 1.09007 * 109.46872 * 299.99897 * 8 7 5 36 36 H 1.08999 * 109.47276 * 59.99683 * 8 7 5 37 37 H 1.09007 * 109.47023 * 299.99661 * 9 8 7 38 38 H 1.08999 * 109.47398 * 59.99614 * 9 8 7 39 39 H 1.08999 * 109.46816 * 299.99442 * 10 9 8 40 40 H 1.08999 * 109.47276 * 59.99540 * 10 9 8 41 41 H 1.00897 * 110.99612 * 179.97438 * 11 10 9 42 42 H 1.00897 * 110.99560 * 303.95111 * 11 10 9 43 43 H 0.97002 * 119.99862 * 94.99695 * 12 5 3 44 44 H 1.08000 * 119.82224 * 359.97438 * 16 15 13 45 45 H 1.07994 * 119.79659 * 180.25739 * 17 16 15 46 46 H 1.08007 * 119.97916 * 179.73810 * 18 17 16 47 47 H 0.96998 * 119.99428 * 179.97438 * 23 22 20 48 48 H 1.08001 * 120.20125 * 359.97438 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 1.5325 2.2174 0.0050 5 6 3.6460 1.1671 -0.0006 6 1 4.0089 0.6534 -0.8908 7 6 4.1563 0.4455 1.2483 8 6 5.6811 0.3357 1.1865 9 6 6.1915 -0.3864 2.4351 10 6 7.7164 -0.4956 2.3735 11 7 8.2065 -1.1884 3.5727 12 7 4.1343 2.5482 -0.0011 13 6 4.2627 3.2172 -1.1640 14 8 3.9736 2.6745 -2.2125 15 6 4.7562 4.6113 -1.1645 16 6 5.0847 5.2381 0.0424 17 6 5.5525 6.5399 0.0495 18 6 5.6896 7.2380 -1.1302 19 6 5.3586 6.6259 -2.3536 20 6 5.4987 7.3398 -3.5665 21 1 5.7215 6.8111 -4.4817 22 6 5.3489 8.7311 -3.5809 23 7 5.8160 9.4289 -4.5841 24 14 4.4817 9.5918 -2.1679 25 1 5.4892 10.0744 -1.1894 26 1 3.7076 10.7458 -2.6915 27 1 3.5592 8.6392 -1.4995 28 6 4.8882 5.3019 -2.3636 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5140 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.9500 -0.8401 0.0004 33 1 3.8684 1.0083 2.1363 34 1 3.7217 -0.5530 1.2942 35 1 5.9692 -0.2271 0.2985 36 1 6.1158 1.3342 1.1406 37 1 5.9035 0.1761 3.3233 38 1 5.7568 -1.3849 2.4805 39 1 8.0047 -1.0578 1.4854 40 1 8.1507 0.5031 2.3283 41 1 9.2117 -1.2736 3.5556 42 1 7.8970 -0.7214 4.4119 43 1 4.3653 2.9812 0.8356 44 1 4.9763 4.7013 0.9733 45 1 5.8073 7.0135 0.9860 46 1 6.0516 8.2555 -1.1162 47 1 5.7118 10.3932 -4.5942 48 1 4.6317 4.8235 -3.2972 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157351816.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:22:15 Heat of formation + Delta-G solvation = -70.842528 kcal Electronic energy + Delta-G solvation = -28311.621182 eV Core-core repulsion = 24365.240059 eV Total energy + Delta-G solvation = -3946.381124 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.38019 -38.89402 -37.35542 -36.87187 -35.11448 -34.71018 -33.69348 -32.74714 -30.89062 -30.10318 -29.42040 -27.26541 -25.49157 -24.91494 -23.01780 -22.27487 -21.37340 -20.72054 -20.39432 -20.08526 -18.03235 -17.51848 -16.69668 -16.43898 -16.21596 -15.72745 -15.57266 -15.16458 -15.07946 -14.74231 -14.62977 -14.38078 -13.97015 -13.68996 -13.59462 -13.41480 -13.11110 -12.74912 -12.72737 -12.60068 -12.44930 -12.29412 -12.00364 -11.74842 -11.60809 -11.41384 -11.29221 -11.02074 -10.90653 -10.76585 -10.51851 -10.10621 -9.98811 -9.70580 -9.43211 -9.25879 -9.14145 -9.09731 -8.85278 -7.84566 -7.73466 -6.98567 -4.53090 1.92939 2.53995 2.59746 2.94158 3.07516 3.19813 3.29744 3.48505 3.69009 3.96034 4.05653 4.44340 4.49985 4.56948 4.62121 4.77780 4.87100 5.03541 5.10150 5.14846 5.31455 5.33195 5.35252 5.40378 5.44920 5.52810 5.62695 5.64611 5.70586 5.88399 5.94207 6.04449 6.04484 6.24004 6.40335 6.53646 6.68451 6.71089 6.71881 6.99615 7.01878 7.22689 7.32500 7.42613 7.51666 7.75536 7.79141 8.01711 8.16491 8.30186 8.55298 8.69125 8.74400 10.03656 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.010728 B = 0.003011 C = 0.002531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2609.304967 B = 9295.834239 C =11061.091289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.739 5.739 3 C 0.498 3.502 4 O -0.519 6.519 5 C 0.131 3.869 6 H 0.114 0.886 7 C -0.119 4.119 8 C -0.120 4.120 9 C -0.116 4.116 10 C 0.057 3.943 11 N -0.855 5.855 12 N -0.711 5.711 13 C 0.573 3.427 14 O -0.546 6.546 15 C -0.105 4.105 16 C -0.213 4.213 17 C -0.084 4.084 18 C -0.222 4.222 19 C 0.082 3.918 20 C -0.443 4.443 21 H 0.093 0.907 22 C 0.084 3.916 23 N -0.805 5.805 24 Si 0.909 3.091 25 H -0.269 1.269 26 H -0.289 1.289 27 H -0.243 1.243 28 C -0.134 4.134 29 H 0.073 0.927 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.400 0.600 33 H 0.075 0.925 34 H 0.081 0.919 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.060 0.940 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.029 0.971 41 H 0.341 0.659 42 H 0.339 0.661 43 H 0.404 0.596 44 H 0.095 0.905 45 H 0.099 0.901 46 H 0.103 0.897 47 H 0.286 0.714 48 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.414 -19.180 15.424 24.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.392 5.392 3 C 0.282 3.718 4 O -0.392 6.392 5 C 0.021 3.979 6 H 0.132 0.868 7 C -0.157 4.157 8 C -0.158 4.158 9 C -0.154 4.154 10 C -0.073 4.073 11 N -0.384 5.384 12 N -0.364 5.364 13 C 0.363 3.637 14 O -0.424 6.424 15 C -0.108 4.108 16 C -0.233 4.233 17 C -0.102 4.102 18 C -0.241 4.241 19 C 0.079 3.921 20 C -0.471 4.471 21 H 0.111 0.889 22 C -0.135 4.135 23 N -0.428 5.428 24 Si 0.736 3.264 25 H -0.196 1.196 26 H -0.217 1.217 27 H -0.166 1.166 28 C -0.154 4.154 29 H 0.092 0.908 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.233 0.767 33 H 0.093 0.907 34 H 0.100 0.900 35 H 0.088 0.912 36 H 0.090 0.910 37 H 0.079 0.921 38 H 0.089 0.911 39 H 0.091 0.909 40 H 0.047 0.953 41 H 0.154 0.846 42 H 0.151 0.849 43 H 0.240 0.760 44 H 0.113 0.887 45 H 0.117 0.883 46 H 0.121 0.879 47 H 0.097 0.903 48 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -2.450 -19.164 14.195 23.974 hybrid contribution 0.386 1.265 1.095 1.717 sum -2.064 -17.899 15.290 23.631 Atomic orbital electron populations 1.21506 0.79779 1.01929 1.02380 1.45808 1.07651 1.08637 1.77130 1.21351 0.90830 0.83795 0.75791 1.90748 1.69935 1.31232 1.47322 1.20798 0.89974 0.85699 1.01382 0.86821 1.21816 0.96861 1.00631 0.96398 1.21574 0.94130 1.01795 0.98328 1.21563 0.94828 1.01114 0.97933 1.21836 0.95439 0.96508 0.93563 1.58742 1.16872 1.58004 1.04771 1.45585 1.67869 1.12718 1.10207 1.18757 0.75722 0.86558 0.82622 1.90686 1.50494 1.69533 1.31661 1.19359 1.04427 0.91725 0.95269 1.20365 1.11583 0.96469 0.94911 1.20500 0.98688 0.94224 0.96767 1.21177 1.09596 1.00177 0.93165 1.17690 0.89562 0.91923 0.92925 1.19511 1.40645 0.91484 0.95443 0.88856 1.26156 0.92938 0.97584 0.96858 1.69694 1.33436 1.08810 1.30905 0.86332 0.80726 0.78709 0.80676 1.19556 1.21657 1.16609 1.21266 1.02746 0.95487 0.95947 0.90797 0.92373 0.92252 0.76684 0.90674 0.90029 0.91211 0.90982 0.92106 0.91138 0.90941 0.95261 0.84647 0.84862 0.75964 0.88682 0.88311 0.87894 0.90348 0.86698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.77 10.70 59.85 0.64 1.41 16 2 N -0.74 -7.03 5.57 -67.08 -0.37 -7.41 16 3 C 0.50 6.91 7.19 -10.99 -0.08 6.83 16 4 O -0.52 -9.88 16.33 5.56 0.09 -9.79 16 5 C 0.13 1.57 2.38 -69.09 -0.16 1.41 16 6 H 0.11 1.40 7.57 -51.93 -0.39 1.01 16 7 C -0.12 -0.89 4.70 -26.73 -0.13 -1.02 16 8 C -0.12 -0.90 5.10 -26.73 -0.14 -1.03 16 9 C -0.12 -0.77 5.47 -26.73 -0.15 -0.92 16 10 C 0.06 0.41 6.79 -3.82 -0.03 0.38 16 11 N -0.85 -5.63 9.62 -10.36 -0.10 -5.73 16 12 N -0.71 -10.74 4.01 -55.87 -0.22 -10.96 16 13 C 0.57 11.59 7.61 -12.31 -0.09 11.50 16 14 O -0.55 -12.57 15.99 5.32 0.09 -12.49 16 15 C -0.10 -2.31 5.87 -105.04 -0.62 -2.92 16 16 C -0.21 -4.23 9.55 -38.92 -0.37 -4.60 16 17 C -0.08 -1.74 10.01 -39.72 -0.40 -2.13 16 18 C -0.22 -5.26 7.17 -38.81 -0.28 -5.54 16 19 C 0.08 2.11 5.10 -106.88 -0.55 1.56 16 20 C -0.44 -12.11 9.57 -37.73 -0.36 -12.47 16 21 H 0.09 2.68 8.06 -52.48 -0.42 2.25 16 22 C 0.08 2.21 5.40 -17.34 -0.09 2.12 16 23 N -0.80 -21.50 13.93 55.55 0.77 -20.73 16 24 Si 0.91 20.85 24.52 -169.99 -4.17 16.68 16 25 H -0.27 -5.89 6.71 56.52 0.38 -5.51 16 26 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 27 H -0.24 -5.78 6.86 56.52 0.39 -5.39 16 28 C -0.13 -3.33 9.34 -38.44 -0.36 -3.68 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.40 2.37 8.19 -40.82 -0.33 2.03 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.08 0.43 7.43 -51.93 -0.39 0.04 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.63 7.75 -51.93 -0.40 0.23 16 37 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.03 0.22 8.14 -51.93 -0.42 -0.20 16 41 H 0.34 1.83 9.08 -39.29 -0.36 1.48 16 42 H 0.34 1.87 8.99 -39.29 -0.35 1.52 16 43 H 0.40 5.35 6.62 -40.82 -0.27 5.08 16 44 H 0.10 1.53 6.38 -52.49 -0.33 1.19 16 45 H 0.10 1.74 8.06 -52.49 -0.42 1.31 16 46 H 0.10 2.42 4.72 -52.48 -0.25 2.17 16 47 H 0.29 6.90 8.30 -40.82 -0.34 6.56 16 48 H 0.11 2.91 7.64 -52.49 -0.40 2.51 16 LS Contribution 394.65 15.07 5.95 5.95 Total: -1.00 -34.27 394.65 -8.42 -42.69 By element: Atomic # 1 Polarization: 18.21 SS G_CDS: -7.30 Total: 10.91 kcal Atomic # 6 Polarization: -5.97 SS G_CDS: -3.15 Total: -9.12 kcal Atomic # 7 Polarization: -44.90 SS G_CDS: 0.08 Total: -44.83 kcal Atomic # 8 Polarization: -22.45 SS G_CDS: 0.18 Total: -22.28 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -4.17 Total: 16.68 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -34.27 -8.42 -42.69 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157351816.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.152 kcal (2) G-P(sol) polarization free energy of solvation -34.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds