Wall clock time and date at job start Tue Mar 31 2020 17:22:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34772 * 120.00359 * 2 1 4 4 O 1.21282 * 119.99523 * 0.27130 * 3 2 1 5 5 C 1.50700 * 120.00106 * 180.02562 * 3 2 1 6 6 H 1.08999 * 109.47177 * 59.99822 * 5 3 2 7 7 C 1.53001 * 109.46790 * 299.99880 * 5 3 2 8 8 C 1.53001 * 109.46930 * 175.00209 * 7 5 3 9 9 C 1.52994 * 109.47169 * 180.02562 * 8 7 5 10 10 C 1.53001 * 109.47169 * 180.02562 * 9 8 7 11 11 N 1.46908 * 109.47095 * 179.97438 * 10 9 8 12 12 N 1.46494 * 109.47153 * 179.97438 * 5 3 2 13 13 C 1.34775 * 120.00202 * 275.00003 * 12 5 3 14 14 O 1.21551 * 120.00089 * 359.97438 * 13 12 5 15 15 C 1.47892 * 120.00092 * 180.02562 * 13 12 5 16 16 C 1.39908 * 120.02413 * 359.72509 * 15 13 12 17 17 C 1.38333 * 120.35907 * 179.71538 * 16 15 13 18 18 C 1.37755 * 120.40606 * 0.56060 * 17 16 15 19 19 C 1.40746 * 120.04049 * 359.72227 * 18 17 16 20 20 C 1.41439 * 120.17407 * 180.02562 * 19 18 17 21 21 H 1.08009 * 119.99812 * 150.17610 * 20 19 18 22 22 C 1.39936 * 120.00286 * 330.17923 * 20 19 18 23 23 N 1.30831 * 119.99922 * 161.73002 * 22 20 19 24 24 Si 1.86804 * 119.99940 * 341.72625 * 22 20 19 25 25 H 1.48502 * 109.46590 * 95.41660 * 24 22 20 26 26 H 1.48497 * 109.46998 * 215.41498 * 24 22 20 27 27 H 1.48500 * 109.46872 * 335.41727 * 24 22 20 28 28 C 1.39000 * 120.02301 * 180.02562 * 15 13 12 29 29 H 1.08994 * 109.47687 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46796 * 300.00594 * 1 2 3 31 31 H 1.09002 * 109.47115 * 59.99748 * 1 2 3 32 32 H 0.96998 * 119.99542 * 179.97438 * 2 1 3 33 33 H 1.08999 * 109.47032 * 294.99661 * 7 5 3 34 34 H 1.08999 * 109.47400 * 54.99968 * 7 5 3 35 35 H 1.09007 * 109.46872 * 299.99897 * 8 7 5 36 36 H 1.08999 * 109.47276 * 59.99683 * 8 7 5 37 37 H 1.09007 * 109.47023 * 299.99661 * 9 8 7 38 38 H 1.08999 * 109.47398 * 59.99614 * 9 8 7 39 39 H 1.08999 * 109.46816 * 299.99442 * 10 9 8 40 40 H 1.08999 * 109.47276 * 59.99540 * 10 9 8 41 41 H 1.00897 * 110.99612 * 179.97438 * 11 10 9 42 42 H 1.00897 * 110.99560 * 303.95111 * 11 10 9 43 43 H 0.97002 * 119.99862 * 94.99695 * 12 5 3 44 44 H 1.08000 * 119.82224 * 359.97438 * 16 15 13 45 45 H 1.07994 * 119.79659 * 180.25739 * 17 16 15 46 46 H 1.08007 * 119.97916 * 179.73810 * 18 17 16 47 47 H 0.96998 * 119.99428 * 179.97438 * 23 22 20 48 48 H 1.08001 * 120.20125 * 359.97438 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 1.5325 2.2174 0.0050 5 6 3.6460 1.1671 -0.0006 6 1 4.0089 0.6534 -0.8908 7 6 4.1563 0.4455 1.2483 8 6 5.6811 0.3357 1.1865 9 6 6.1915 -0.3864 2.4351 10 6 7.7164 -0.4956 2.3735 11 7 8.2065 -1.1884 3.5727 12 7 4.1343 2.5482 -0.0011 13 6 4.2627 3.2172 -1.1640 14 8 3.9736 2.6745 -2.2125 15 6 4.7562 4.6113 -1.1645 16 6 5.0847 5.2381 0.0424 17 6 5.5525 6.5399 0.0495 18 6 5.6896 7.2380 -1.1302 19 6 5.3586 6.6259 -2.3536 20 6 5.4987 7.3398 -3.5665 21 1 5.7215 6.8111 -4.4817 22 6 5.3489 8.7311 -3.5809 23 7 5.8160 9.4289 -4.5841 24 14 4.4817 9.5918 -2.1679 25 1 5.4892 10.0744 -1.1894 26 1 3.7076 10.7458 -2.6915 27 1 3.5592 8.6392 -1.4995 28 6 4.8882 5.3019 -2.3636 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5140 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.9500 -0.8401 0.0004 33 1 3.8684 1.0083 2.1363 34 1 3.7217 -0.5530 1.2942 35 1 5.9692 -0.2271 0.2985 36 1 6.1158 1.3342 1.1406 37 1 5.9035 0.1761 3.3233 38 1 5.7568 -1.3849 2.4805 39 1 8.0047 -1.0578 1.4854 40 1 8.1507 0.5031 2.3283 41 1 9.2117 -1.2736 3.5556 42 1 7.8970 -0.7214 4.4119 43 1 4.3653 2.9812 0.8356 44 1 4.9763 4.7013 0.9733 45 1 5.8073 7.0135 0.9860 46 1 6.0516 8.2555 -1.1162 47 1 5.7118 10.3932 -4.5942 48 1 4.6317 4.8235 -3.2972 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157351816.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:22:14 Heat of formation + Delta-G solvation = -98.555607 kcal Electronic energy + Delta-G solvation = -28312.822912 eV Core-core repulsion = 24365.240059 eV Total energy + Delta-G solvation = -3947.582853 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.62140 -40.34263 -39.01014 -37.67373 -36.08558 -35.70381 -35.58380 -33.77516 -32.47374 -31.82254 -30.54651 -27.98582 -27.18455 -26.05933 -24.51878 -23.02089 -22.49887 -21.93873 -21.79076 -21.36379 -19.68802 -18.61090 -18.09261 -17.82669 -17.29732 -16.84200 -16.57626 -16.43371 -16.18663 -16.04576 -15.77074 -15.50444 -15.35230 -15.02432 -14.79057 -14.61092 -14.45771 -14.38205 -13.96145 -13.84144 -13.39181 -13.24355 -13.10292 -13.06993 -12.85624 -12.70436 -12.40434 -12.32315 -12.04471 -11.95745 -11.78960 -11.58764 -11.47979 -11.28436 -11.22193 -10.87946 -10.16970 -10.15961 -9.64793 -9.59141 -9.57485 -8.93726 -6.57118 0.15838 0.72238 1.22865 1.39406 1.46328 1.54277 1.79469 2.04322 2.12596 2.39577 2.65698 3.41519 3.44388 3.78700 3.81377 3.88805 3.97704 4.15510 4.20362 4.24786 4.38167 4.44844 4.47701 4.55744 4.58481 4.61699 4.69727 4.84739 4.86993 4.88945 4.90786 4.92871 5.00041 5.13581 5.15582 5.27671 5.39756 5.40231 5.41969 5.49883 5.62758 5.69167 5.82312 6.08246 6.25761 6.27567 6.49117 6.50260 6.60859 6.64074 6.72331 7.16762 7.23796 8.15468 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.010728 B = 0.003011 C = 0.002531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2609.304967 B = 9295.834239 C =11061.091289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.718 5.718 3 C 0.492 3.508 4 O -0.579 6.579 5 C 0.129 3.871 6 H 0.111 0.889 7 C -0.106 4.106 8 C -0.117 4.117 9 C -0.108 4.108 10 C 0.055 3.945 11 N -0.861 5.861 12 N -0.690 5.690 13 C 0.569 3.431 14 O -0.584 6.584 15 C -0.113 4.113 16 C -0.182 4.182 17 C -0.082 4.082 18 C -0.225 4.225 19 C 0.066 3.934 20 C -0.488 4.488 21 H 0.050 0.950 22 C 0.047 3.953 23 N -0.848 5.848 24 Si 0.965 3.035 25 H -0.243 1.243 26 H -0.277 1.277 27 H -0.256 1.256 28 C -0.167 4.167 29 H 0.117 0.883 30 H 0.053 0.947 31 H 0.035 0.965 32 H 0.420 0.580 33 H 0.085 0.915 34 H 0.113 0.887 35 H 0.067 0.933 36 H 0.059 0.941 37 H 0.067 0.933 38 H 0.075 0.925 39 H 0.066 0.934 40 H 0.023 0.977 41 H 0.347 0.653 42 H 0.346 0.654 43 H 0.415 0.585 44 H 0.147 0.853 45 H 0.149 0.851 46 H 0.108 0.892 47 H 0.295 0.705 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.787 -21.032 20.404 29.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.372 5.372 3 C 0.277 3.723 4 O -0.458 6.458 5 C 0.020 3.980 6 H 0.128 0.872 7 C -0.144 4.144 8 C -0.155 4.155 9 C -0.146 4.146 10 C -0.076 4.076 11 N -0.391 5.391 12 N -0.342 5.342 13 C 0.359 3.641 14 O -0.465 6.465 15 C -0.116 4.116 16 C -0.201 4.201 17 C -0.100 4.100 18 C -0.244 4.244 19 C 0.063 3.937 20 C -0.518 4.518 21 H 0.069 0.931 22 C -0.168 4.168 23 N -0.474 5.474 24 Si 0.787 3.213 25 H -0.167 1.167 26 H -0.203 1.203 27 H -0.180 1.180 28 C -0.188 4.188 29 H 0.136 0.864 30 H 0.071 0.929 31 H 0.054 0.946 32 H 0.258 0.742 33 H 0.103 0.897 34 H 0.132 0.868 35 H 0.086 0.914 36 H 0.078 0.922 37 H 0.086 0.914 38 H 0.094 0.906 39 H 0.084 0.916 40 H 0.042 0.958 41 H 0.160 0.840 42 H 0.159 0.841 43 H 0.254 0.746 44 H 0.164 0.836 45 H 0.166 0.834 46 H 0.126 0.874 47 H 0.106 0.894 48 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -2.801 -21.098 19.225 28.680 hybrid contribution 0.485 1.529 -0.307 1.633 sum -2.316 -19.569 18.918 27.316 Atomic orbital electron populations 1.21659 0.78951 1.04361 1.01018 1.45687 1.08273 1.08387 1.74833 1.21650 0.91486 0.84035 0.75107 1.90727 1.71070 1.33421 1.50561 1.21109 0.89126 0.83999 1.03731 0.87151 1.21833 0.96802 1.01710 0.94043 1.21533 0.93933 1.01222 0.98859 1.21472 0.94247 1.01293 0.97542 1.21828 0.95971 0.96130 0.93635 1.58747 1.17470 1.57997 1.04899 1.45392 1.66108 1.13832 1.08873 1.18569 0.75820 0.86140 0.83590 1.90667 1.52294 1.70129 1.33394 1.19690 1.03745 0.92981 0.95152 1.20978 1.07171 0.96186 0.95761 1.21040 0.97119 0.94272 0.97523 1.21397 1.09008 1.00680 0.93338 1.17770 0.90203 0.92292 0.93386 1.19453 1.44750 0.92595 0.94992 0.93147 1.26865 0.93044 0.97522 0.99356 1.69721 1.35287 1.09575 1.32822 0.85501 0.79897 0.77598 0.78265 1.16746 1.20333 1.18025 1.21184 1.05092 0.96026 0.96459 0.86431 0.92858 0.94580 0.74248 0.89676 0.86836 0.91442 0.92238 0.91391 0.90627 0.91582 0.95836 0.84041 0.84134 0.74586 0.83561 0.83368 0.87443 0.89400 0.89461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.27 10.70 127.77 1.37 2.64 16 2 N -0.72 -11.75 5.57 -484.52 -2.70 -14.45 16 3 C 0.49 12.77 7.19 87.66 0.63 13.40 16 4 O -0.58 -21.73 16.33 -3.04 -0.05 -21.78 16 5 C 0.13 2.79 2.38 44.25 0.11 2.90 16 6 H 0.11 2.54 7.57 -2.39 -0.02 2.53 16 7 C -0.11 -1.17 4.70 30.59 0.14 -1.03 16 8 C -0.12 -1.37 5.10 30.59 0.16 -1.21 16 9 C -0.11 -1.05 5.47 30.59 0.17 -0.88 16 10 C 0.06 0.65 6.79 86.30 0.59 1.24 16 11 N -0.86 -9.30 9.62 -186.70 -1.80 -11.10 16 12 N -0.69 -19.36 4.01 -448.94 -1.80 -21.16 16 13 C 0.57 22.88 7.61 86.80 0.66 23.54 16 14 O -0.58 -27.73 15.99 -3.87 -0.06 -27.80 16 15 C -0.11 -4.91 5.87 -20.13 -0.12 -5.03 16 16 C -0.18 -6.51 9.55 22.70 0.22 -6.29 16 17 C -0.08 -3.06 10.01 22.18 0.22 -2.83 16 18 C -0.22 -10.38 7.17 22.77 0.16 -10.22 16 19 C 0.07 3.53 5.10 -21.32 -0.11 3.42 16 20 C -0.49 -28.86 9.57 23.47 0.22 -28.64 16 21 H 0.05 3.25 8.06 -2.91 -0.02 3.23 16 22 C 0.05 2.58 5.40 85.25 0.46 3.04 16 23 N -0.85 -47.71 13.93 21.82 0.30 -47.41 16 24 Si 0.97 43.10 24.52 68.60 1.68 44.78 16 25 H -0.24 -9.74 6.71 99.48 0.67 -9.08 16 26 H -0.28 -11.67 7.11 99.48 0.71 -10.97 16 27 H -0.26 -11.88 6.86 99.48 0.68 -11.19 16 28 C -0.17 -8.72 9.34 23.01 0.21 -8.50 16 29 H 0.12 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 31 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.42 3.35 8.19 -92.71 -0.76 2.59 16 33 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.11 0.60 7.43 -2.39 -0.02 0.58 16 35 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 36 H 0.06 0.86 7.75 -2.39 -0.02 0.84 16 37 H 0.07 0.59 8.14 -2.38 -0.02 0.57 16 38 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.02 0.30 8.14 -2.39 -0.02 0.28 16 41 H 0.35 3.06 9.08 -89.70 -0.81 2.24 16 42 H 0.35 2.90 8.99 -89.70 -0.81 2.10 16 43 H 0.42 9.39 6.62 -92.71 -0.61 8.78 16 44 H 0.15 3.77 6.38 -2.91 -0.02 3.75 16 45 H 0.15 4.19 8.06 -2.91 -0.02 4.17 16 46 H 0.11 4.84 4.72 -2.91 -0.01 4.83 16 47 H 0.30 14.80 8.30 -92.71 -0.77 14.03 16 48 H 0.09 4.89 7.64 -2.91 -0.02 4.87 16 Total: -1.00 -82.36 394.65 -1.37 -83.72 By element: Atomic # 1 Polarization: 31.67 SS G_CDS: -2.04 Total: 29.63 kcal Atomic # 6 Polarization: -19.55 SS G_CDS: 5.09 Total: -14.46 kcal Atomic # 7 Polarization: -88.11 SS G_CDS: -5.99 Total: -94.11 kcal Atomic # 8 Polarization: -49.46 SS G_CDS: -0.11 Total: -49.58 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 1.68 Total: 44.78 kcal Total: -82.36 -1.37 -83.72 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157351816.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.831 kcal (2) G-P(sol) polarization free energy of solvation -82.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds