Wall clock time and date at job start Tue Mar 31 2020 17:38:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35624 * 116.99969 * 2 1 4 4 C 1.39149 * 120.50169 * 359.97438 * 3 2 1 5 5 C 1.38312 * 118.63046 * 180.02562 * 4 3 2 6 6 C 1.39947 * 119.58846 * 0.02562 * 5 4 3 7 7 N 1.38902 * 119.49101 * 179.97438 * 6 5 4 8 8 C 1.46499 * 120.00266 * 359.97438 * 7 6 5 9 9 C 1.53000 * 109.47338 * 180.02562 * 8 7 6 10 10 C 1.53003 * 109.47296 * 180.02562 * 9 8 7 11 11 H 1.09002 * 110.49466 * 54.29364 * 10 9 8 12 12 C 1.54992 * 110.54606 * 291.58913 * 10 9 8 13 13 C 1.55054 * 102.12254 * 220.40774 * 12 10 9 14 14 O 1.44568 * 103.64175 * 36.59205 * 13 12 10 15 15 C 1.42981 * 106.77641 * 320.76464 * 14 13 12 16 16 C 1.53207 * 115.35318 * 156.20473 * 15 14 13 17 17 N 1.48095 * 85.96514 * 93.37471 * 16 15 14 18 18 C 1.48095 * 90.88336 * 24.17239 * 17 16 15 19 19 N 1.31865 * 121.01327 * 0.24852 * 6 5 4 20 20 C 1.33826 * 121.46573 * 359.48598 * 19 6 5 21 21 C 1.40915 * 119.84624 * 180.24277 * 20 19 6 22 22 H 1.07998 * 120.00443 * 180.27070 * 21 20 19 23 23 C 1.40028 * 119.99907 * 0.27057 * 21 20 19 24 24 N 1.30785 * 120.00301 * 359.97438 * 23 21 20 25 25 Si 1.86807 * 119.99913 * 180.02562 * 23 21 20 26 26 H 1.48491 * 109.47168 * 0.02562 * 25 23 21 27 27 H 1.48502 * 109.47088 * 119.99959 * 25 23 21 28 28 H 1.48494 * 109.46839 * 239.99715 * 25 23 21 29 29 H 1.08999 * 109.47033 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46974 * 300.00187 * 1 2 3 31 31 H 1.09005 * 109.47135 * 59.99867 * 1 2 3 32 32 H 1.08005 * 120.69207 * 0.02562 * 4 3 2 33 33 H 1.07994 * 120.20662 * 180.02562 * 5 4 3 34 34 H 0.97003 * 119.99933 * 179.97438 * 7 6 5 35 35 H 1.08997 * 109.47155 * 60.00361 * 8 7 6 36 36 H 1.08997 * 109.47247 * 300.00170 * 8 7 6 37 37 H 1.08996 * 109.47859 * 59.99548 * 9 8 7 38 38 H 1.09007 * 109.47119 * 299.99847 * 9 8 7 39 39 H 1.08997 * 110.87650 * 338.56232 * 12 10 9 40 40 H 1.08996 * 110.87245 * 102.04507 * 12 10 9 41 41 H 1.09000 * 110.59198 * 155.13617 * 13 12 10 42 42 H 1.09001 * 110.58988 * 277.90087 * 13 12 10 43 43 H 1.09001 * 113.79562 * 207.64131 * 16 15 14 44 44 H 1.09002 * 113.79312 * 339.11228 * 16 15 14 45 45 H 1.00905 * 110.99897 * 137.11194 * 17 16 15 46 46 H 1.08997 * 113.79779 * 221.57130 * 18 17 16 47 47 H 1.09006 * 113.79222 * 90.08289 * 18 17 16 48 48 H 0.96994 * 120.00156 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2084 0.0000 4 6 1.2971 2.3820 -0.0005 5 6 1.9649 3.5932 -0.0011 6 6 3.3643 3.6108 -0.0016 7 7 4.0329 4.8283 -0.0026 8 6 3.2734 6.0811 -0.0038 9 6 4.2426 7.2650 -0.0055 10 6 3.4494 8.5734 -0.0060 11 1 2.7426 8.5915 0.8236 12 6 2.7098 8.7606 -1.3551 13 6 2.9030 10.2752 -1.6249 14 8 4.2365 10.5416 -1.1343 15 6 4.3947 9.7799 0.0653 16 6 5.8412 9.4480 0.4458 17 7 5.7953 10.6762 1.2721 18 6 4.3202 10.5845 1.3672 19 7 4.0578 2.4892 -0.0065 20 6 3.4543 1.2947 -0.0009 21 6 4.2291 0.1177 -0.0012 22 1 3.7447 -0.8476 -0.0012 23 6 5.6269 0.1996 -0.0017 24 7 6.2136 1.3685 -0.0023 25 14 6.6540 -1.3609 -0.0029 26 1 5.7567 -2.5440 -0.0038 27 1 7.5104 -1.3888 -1.2157 28 1 7.5113 -1.3900 1.2092 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 0.2176 2.3480 -0.0005 33 1 1.4099 4.5197 -0.0011 34 1 5.0027 4.8490 -0.0026 35 1 2.6457 6.1262 0.8861 36 1 2.6457 6.1246 -0.8938 37 1 4.8701 7.2197 -0.8955 38 1 4.8707 7.2217 0.8844 39 1 3.1756 8.1640 -2.1395 40 1 1.6531 8.5122 -1.2565 41 1 2.8380 10.4858 -2.6924 42 1 2.1657 10.8597 -1.0746 43 1 5.9440 8.5311 1.0261 44 1 6.5397 9.5055 -0.3890 45 1 6.2258 10.5230 2.1717 46 1 3.8124 11.5433 1.2631 47 1 3.9698 10.0061 2.2221 48 1 7.1819 1.4252 -0.0022 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163088355.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:38:51 Heat of formation + Delta-G solvation = -1.069906 kcal Electronic energy + Delta-G solvation = -28594.184376 eV Core-core repulsion = 24650.828820 eV Total energy + Delta-G solvation = -3943.355556 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.11001 -38.81757 -37.24772 -37.00177 -35.58190 -33.80274 -32.70718 -30.29178 -29.98872 -28.82045 -27.31282 -26.49301 -26.23892 -24.98311 -23.90785 -23.06056 -21.56199 -20.83519 -20.31187 -19.31323 -17.49418 -17.09150 -16.71605 -16.46360 -16.33502 -15.70402 -15.38382 -14.91362 -14.81622 -14.74043 -14.58850 -14.08641 -13.90696 -13.64022 -13.22222 -13.04568 -12.81882 -12.70015 -12.42567 -12.31504 -12.05110 -11.87287 -11.58042 -11.55862 -11.39853 -11.21105 -11.18212 -10.94079 -10.77582 -10.62671 -10.50898 -10.42936 -10.34397 -9.81357 -9.76315 -9.45646 -9.15048 -8.43913 -8.00152 -7.66675 -6.37638 -6.27806 -4.35337 2.81921 3.13067 3.13245 3.19068 3.27460 3.35159 3.88663 3.93545 3.99918 4.26644 4.36373 4.42031 4.62139 4.74125 4.81928 4.87085 4.97443 5.08928 5.14668 5.23311 5.29850 5.37244 5.47800 5.53317 5.56650 5.64982 5.69902 5.77362 5.80198 5.80753 5.82820 5.92797 5.98136 5.98400 6.09809 6.15640 6.21113 6.40010 6.70989 6.73021 6.81542 6.94324 7.21167 7.31005 7.50043 7.69959 8.21906 8.29527 8.45151 8.69621 8.80643 9.18525 10.18633 10.35841 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013812 B = 0.002673 C = 0.002330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2026.738396 B =10473.060487 C =12015.124289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.312 6.312 3 C -0.077 4.077 4 C -0.114 4.114 5 C -0.347 4.347 6 C 0.393 3.607 7 N -0.740 5.740 8 C 0.145 3.855 9 C -0.121 4.121 10 C -0.106 4.106 11 H 0.089 0.911 12 C -0.151 4.151 13 C 0.043 3.957 14 O -0.341 6.341 15 C 0.086 3.914 16 C 0.009 3.991 17 N -0.630 5.630 18 C -0.009 4.009 19 N -0.514 5.514 20 C 0.289 3.711 21 C -0.412 4.412 22 H 0.091 0.909 23 C 0.068 3.932 24 N -0.714 5.714 25 Si 0.907 3.093 26 H -0.259 1.259 27 H -0.274 1.274 28 H -0.274 1.274 29 H 0.080 0.920 30 H 0.036 0.964 31 H 0.036 0.964 32 H 0.099 0.901 33 H 0.091 0.909 34 H 0.395 0.605 35 H 0.048 0.952 36 H 0.051 0.949 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.094 0.906 42 H 0.060 0.940 43 H 0.088 0.912 44 H 0.096 0.904 45 H 0.318 0.682 46 H 0.091 0.909 47 H 0.075 0.925 48 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.532 13.938 0.848 14.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.225 6.225 3 C -0.125 4.125 4 C -0.139 4.139 5 C -0.373 4.373 6 C 0.155 3.845 7 N -0.377 5.377 8 C 0.019 3.981 9 C -0.159 4.159 10 C -0.125 4.125 11 H 0.107 0.893 12 C -0.189 4.189 13 C -0.033 4.033 14 O -0.259 6.259 15 C 0.045 3.955 16 C -0.121 4.121 17 N -0.255 5.255 18 C -0.139 4.139 19 N -0.236 5.236 20 C 0.160 3.840 21 C -0.444 4.444 22 H 0.109 0.891 23 C -0.157 4.157 24 N -0.336 5.336 25 Si 0.731 3.269 26 H -0.183 1.183 27 H -0.199 1.199 28 H -0.199 1.199 29 H 0.098 0.902 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.117 0.883 33 H 0.109 0.891 34 H 0.230 0.770 35 H 0.066 0.934 36 H 0.069 0.931 37 H 0.093 0.907 38 H 0.090 0.910 39 H 0.102 0.898 40 H 0.102 0.898 41 H 0.112 0.888 42 H 0.078 0.922 43 H 0.106 0.894 44 H 0.114 0.886 45 H 0.131 0.869 46 H 0.109 0.891 47 H 0.094 0.906 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.180 14.803 0.221 15.142 hybrid contribution -0.897 -1.219 0.738 1.684 sum -4.077 13.584 0.959 14.215 Atomic orbital electron populations 1.22682 0.82235 1.01489 0.99616 1.85922 1.17801 1.27905 1.90909 1.20036 0.93450 0.83105 1.15863 1.20667 0.97233 0.92398 1.03584 1.20333 0.92828 0.96250 1.27930 1.18474 0.87702 0.86705 0.91573 1.44035 1.07794 1.01492 1.84419 1.20999 0.93813 0.82878 1.00407 1.21881 0.98382 0.92541 1.03099 1.22354 0.97084 0.94209 0.98890 0.89310 1.23294 1.01658 0.96613 0.97332 1.23646 0.84614 0.94951 1.00105 1.88830 1.31624 1.67182 1.38286 1.23061 0.95746 0.90277 0.86384 1.24081 0.96174 0.93181 0.98650 1.66937 1.06855 1.34372 1.17295 1.24239 0.91360 1.01306 0.97019 1.68384 1.34741 0.94976 1.25540 1.17773 0.85007 0.91068 0.90106 1.19576 0.90525 0.93155 1.41189 0.89069 1.26085 0.98775 0.97140 0.93733 1.70177 1.10094 1.24444 1.28871 0.86274 0.79808 0.82387 0.78397 1.18285 1.19937 1.19948 0.90190 0.94537 0.94521 0.88334 0.89119 0.77043 0.93380 0.93134 0.90715 0.90960 0.89845 0.89845 0.88808 0.92150 0.89430 0.88584 0.86937 0.89058 0.90647 0.91946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.63 9.83 101.05 0.99 1.62 16 2 O -0.31 -7.32 9.61 -18.57 -0.18 -7.49 16 3 C -0.08 -1.96 6.74 -38.11 -0.26 -2.22 16 4 C -0.11 -2.64 9.12 -39.22 -0.36 -3.00 16 5 C -0.35 -7.90 9.33 -38.91 -0.36 -8.27 16 6 C 0.39 9.44 7.65 -155.26 -1.19 8.25 16 7 N -0.74 -14.24 5.72 -60.35 -0.35 -14.58 16 8 C 0.14 2.09 4.75 -4.04 -0.02 2.07 16 9 C -0.12 -1.34 3.74 -26.73 -0.10 -1.44 16 10 C -0.11 -1.00 2.79 -89.34 -0.25 -1.25 16 11 H 0.09 0.77 7.89 -51.93 -0.41 0.36 16 12 C -0.15 -1.37 5.96 -24.59 -0.15 -1.51 16 13 C 0.04 0.39 7.73 38.24 0.30 0.68 16 14 O -0.34 -4.07 11.29 -35.23 -0.40 -4.47 16 15 C 0.09 0.88 1.48 -90.26 -0.13 0.75 16 16 C 0.01 0.09 7.59 -3.06 -0.02 0.07 16 17 N -0.63 -6.42 8.53 -120.25 -1.03 -7.45 16 18 C -0.01 -0.08 8.31 -3.05 -0.03 -0.11 16 19 N -0.51 -14.03 7.88 -10.20 -0.08 -14.11 16 20 C 0.29 8.08 6.56 -84.85 -0.56 7.52 16 21 C -0.41 -11.31 8.94 -37.90 -0.34 -11.65 16 22 H 0.09 2.44 7.31 -52.49 -0.38 2.06 16 23 C 0.07 1.73 5.50 -17.33 -0.10 1.63 16 24 N -0.71 -18.72 11.45 55.55 0.64 -18.09 16 25 Si 0.91 18.83 29.56 -169.99 -5.03 13.80 16 26 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 27 H -0.27 -5.59 7.11 56.52 0.40 -5.18 16 28 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 29 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.04 0.59 7.69 -51.93 -0.40 0.19 16 31 H 0.04 0.59 7.69 -51.93 -0.40 0.19 16 32 H 0.10 1.97 6.44 -52.48 -0.34 1.64 16 33 H 0.09 1.83 6.67 -52.49 -0.35 1.48 16 34 H 0.40 7.57 8.59 -40.82 -0.35 7.22 16 35 H 0.05 0.70 7.91 -51.93 -0.41 0.29 16 36 H 0.05 0.74 7.33 -51.93 -0.38 0.36 16 37 H 0.07 0.87 8.04 -51.93 -0.42 0.45 16 38 H 0.07 0.77 6.21 -51.92 -0.32 0.45 16 39 H 0.08 0.83 7.81 -51.93 -0.41 0.42 16 40 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 41 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 42 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 43 H 0.09 0.79 5.87 -51.93 -0.30 0.48 16 44 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 45 H 0.32 2.65 8.92 -39.29 -0.35 2.30 16 46 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 47 H 0.08 0.58 8.07 -51.93 -0.42 0.16 16 48 H 0.27 6.39 8.29 -40.82 -0.34 6.05 16 LS Contribution 380.92 15.07 5.74 5.74 Total: -1.00 -31.80 380.92 -10.55 -42.35 By element: Atomic # 1 Polarization: 18.46 SS G_CDS: -7.31 Total: 11.14 kcal Atomic # 6 Polarization: -4.29 SS G_CDS: -2.56 Total: -6.85 kcal Atomic # 7 Polarization: -53.41 SS G_CDS: -0.82 Total: -54.23 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: -0.58 Total: -11.96 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -5.03 Total: 13.80 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -31.80 -10.55 -42.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163088355.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.281 kcal (2) G-P(sol) polarization free energy of solvation -31.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds