Wall clock time and date at job start Tue Mar 31 2020 17:38:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35624 * 116.99969 * 2 1 4 4 C 1.39149 * 120.50169 * 359.97438 * 3 2 1 5 5 C 1.38312 * 118.63046 * 180.02562 * 4 3 2 6 6 C 1.39947 * 119.58846 * 0.02562 * 5 4 3 7 7 N 1.38902 * 119.49101 * 179.97438 * 6 5 4 8 8 C 1.46499 * 120.00266 * 359.97438 * 7 6 5 9 9 C 1.53000 * 109.47338 * 180.02562 * 8 7 6 10 10 C 1.53003 * 109.47296 * 180.02562 * 9 8 7 11 11 H 1.09002 * 110.49466 * 54.29364 * 10 9 8 12 12 C 1.54992 * 110.54606 * 291.58913 * 10 9 8 13 13 C 1.55054 * 102.12254 * 220.40774 * 12 10 9 14 14 O 1.44568 * 103.64175 * 36.59205 * 13 12 10 15 15 C 1.42981 * 106.77641 * 320.76464 * 14 13 12 16 16 C 1.53207 * 115.35318 * 156.20473 * 15 14 13 17 17 N 1.48095 * 85.96514 * 93.37471 * 16 15 14 18 18 C 1.48095 * 90.88336 * 24.17239 * 17 16 15 19 19 N 1.31865 * 121.01327 * 0.24852 * 6 5 4 20 20 C 1.33826 * 121.46573 * 359.48598 * 19 6 5 21 21 C 1.40915 * 119.84624 * 180.24277 * 20 19 6 22 22 H 1.07998 * 120.00443 * 180.27070 * 21 20 19 23 23 C 1.40028 * 119.99907 * 0.27057 * 21 20 19 24 24 N 1.30785 * 120.00301 * 359.97438 * 23 21 20 25 25 Si 1.86807 * 119.99913 * 180.02562 * 23 21 20 26 26 H 1.48491 * 109.47168 * 0.02562 * 25 23 21 27 27 H 1.48502 * 109.47088 * 119.99959 * 25 23 21 28 28 H 1.48494 * 109.46839 * 239.99715 * 25 23 21 29 29 H 1.08999 * 109.47033 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46974 * 300.00187 * 1 2 3 31 31 H 1.09005 * 109.47135 * 59.99867 * 1 2 3 32 32 H 1.08005 * 120.69207 * 0.02562 * 4 3 2 33 33 H 1.07994 * 120.20662 * 180.02562 * 5 4 3 34 34 H 0.97003 * 119.99933 * 179.97438 * 7 6 5 35 35 H 1.08997 * 109.47155 * 60.00361 * 8 7 6 36 36 H 1.08997 * 109.47247 * 300.00170 * 8 7 6 37 37 H 1.08996 * 109.47859 * 59.99548 * 9 8 7 38 38 H 1.09007 * 109.47119 * 299.99847 * 9 8 7 39 39 H 1.08997 * 110.87650 * 338.56232 * 12 10 9 40 40 H 1.08996 * 110.87245 * 102.04507 * 12 10 9 41 41 H 1.09000 * 110.59198 * 155.13617 * 13 12 10 42 42 H 1.09001 * 110.58988 * 277.90087 * 13 12 10 43 43 H 1.09001 * 113.79562 * 207.64131 * 16 15 14 44 44 H 1.09002 * 113.79312 * 339.11228 * 16 15 14 45 45 H 1.00905 * 110.99897 * 137.11194 * 17 16 15 46 46 H 1.08997 * 113.79779 * 221.57130 * 18 17 16 47 47 H 1.09006 * 113.79222 * 90.08289 * 18 17 16 48 48 H 0.96994 * 120.00156 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2084 0.0000 4 6 1.2971 2.3820 -0.0005 5 6 1.9649 3.5932 -0.0011 6 6 3.3643 3.6108 -0.0016 7 7 4.0329 4.8283 -0.0026 8 6 3.2734 6.0811 -0.0038 9 6 4.2426 7.2650 -0.0055 10 6 3.4494 8.5734 -0.0060 11 1 2.7426 8.5915 0.8236 12 6 2.7098 8.7606 -1.3551 13 6 2.9030 10.2752 -1.6249 14 8 4.2365 10.5416 -1.1343 15 6 4.3947 9.7799 0.0653 16 6 5.8412 9.4480 0.4458 17 7 5.7953 10.6762 1.2721 18 6 4.3202 10.5845 1.3672 19 7 4.0578 2.4892 -0.0065 20 6 3.4543 1.2947 -0.0009 21 6 4.2291 0.1177 -0.0012 22 1 3.7447 -0.8476 -0.0012 23 6 5.6269 0.1996 -0.0017 24 7 6.2136 1.3685 -0.0023 25 14 6.6540 -1.3609 -0.0029 26 1 5.7567 -2.5440 -0.0038 27 1 7.5104 -1.3888 -1.2157 28 1 7.5113 -1.3900 1.2092 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 0.2176 2.3480 -0.0005 33 1 1.4099 4.5197 -0.0011 34 1 5.0027 4.8490 -0.0026 35 1 2.6457 6.1262 0.8861 36 1 2.6457 6.1246 -0.8938 37 1 4.8701 7.2197 -0.8955 38 1 4.8707 7.2217 0.8844 39 1 3.1756 8.1640 -2.1395 40 1 1.6531 8.5122 -1.2565 41 1 2.8380 10.4858 -2.6924 42 1 2.1657 10.8597 -1.0746 43 1 5.9440 8.5311 1.0261 44 1 6.5397 9.5055 -0.3890 45 1 6.2258 10.5230 2.1717 46 1 3.8124 11.5433 1.2631 47 1 3.9698 10.0061 2.2221 48 1 7.1819 1.4252 -0.0022 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163088355.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:38:50 Heat of formation + Delta-G solvation = -24.557592 kcal Electronic energy + Delta-G solvation = -28595.202878 eV Core-core repulsion = 24650.828820 eV Total energy + Delta-G solvation = -3944.374058 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.88108 -40.59767 -38.71714 -37.92631 -36.97222 -35.43539 -34.07620 -32.15087 -31.17840 -30.06398 -28.43987 -27.94856 -27.19611 -26.67415 -24.80311 -24.11607 -23.18634 -22.11794 -21.70195 -20.11269 -19.30583 -18.31447 -18.07889 -17.90152 -17.34501 -16.73947 -16.52253 -16.49459 -16.20766 -16.02938 -15.73756 -15.53039 -14.89090 -14.68997 -14.43847 -14.41198 -14.23196 -14.03334 -13.68483 -13.47305 -13.26721 -12.99960 -12.92813 -12.86553 -12.78336 -12.51172 -12.47279 -12.21466 -12.04618 -11.96632 -11.73193 -11.54610 -11.50562 -11.39646 -11.24135 -10.56750 -10.09937 -9.89485 -9.87020 -9.55617 -8.24610 -8.04411 -6.30935 1.00476 1.29492 1.42766 1.56982 1.57967 2.27318 2.59941 2.64354 2.92662 3.05307 3.18498 3.38734 3.51946 3.68508 3.94839 3.98981 4.14984 4.16345 4.28274 4.30164 4.33175 4.46287 4.47289 4.52882 4.52960 4.56526 4.62577 4.67994 4.71651 4.76554 4.78871 4.82917 4.88100 4.92968 4.96024 5.05009 5.08685 5.11182 5.17632 5.27939 5.35123 5.53613 5.75671 5.88574 5.99827 6.27800 6.28992 6.43975 6.77331 6.86440 7.03753 7.36198 8.31916 8.50448 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013812 B = 0.002673 C = 0.002330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2026.738396 B =10473.060487 C =12015.124289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.338 6.338 3 C -0.101 4.101 4 C -0.112 4.112 5 C -0.343 4.343 6 C 0.374 3.626 7 N -0.735 5.735 8 C 0.145 3.855 9 C -0.109 4.109 10 C -0.098 4.098 11 H 0.104 0.896 12 C -0.150 4.150 13 C 0.041 3.959 14 O -0.370 6.370 15 C 0.083 3.917 16 C 0.006 3.994 17 N -0.648 5.648 18 C -0.003 4.003 19 N -0.544 5.544 20 C 0.252 3.748 21 C -0.451 4.451 22 H 0.082 0.918 23 C 0.026 3.974 24 N -0.748 5.748 25 Si 0.984 3.016 26 H -0.260 1.260 27 H -0.266 1.266 28 H -0.265 1.265 29 H 0.110 0.890 30 H 0.047 0.953 31 H 0.047 0.953 32 H 0.132 0.868 33 H 0.121 0.879 34 H 0.393 0.607 35 H 0.055 0.945 36 H 0.053 0.947 37 H 0.066 0.934 38 H 0.078 0.922 39 H 0.070 0.930 40 H 0.098 0.902 41 H 0.102 0.898 42 H 0.075 0.925 43 H 0.098 0.902 44 H 0.081 0.919 45 H 0.328 0.672 46 H 0.089 0.911 47 H 0.095 0.905 48 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.810 14.664 1.326 15.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.253 6.253 3 C -0.149 4.149 4 C -0.137 4.137 5 C -0.369 4.369 6 C 0.135 3.865 7 N -0.372 5.372 8 C 0.021 3.979 9 C -0.146 4.146 10 C -0.118 4.118 11 H 0.123 0.877 12 C -0.188 4.188 13 C -0.035 4.035 14 O -0.288 6.288 15 C 0.042 3.958 16 C -0.123 4.123 17 N -0.273 5.273 18 C -0.133 4.133 19 N -0.268 5.268 20 C 0.124 3.876 21 C -0.483 4.483 22 H 0.100 0.900 23 C -0.196 4.196 24 N -0.370 5.370 25 Si 0.804 3.196 26 H -0.183 1.183 27 H -0.190 1.190 28 H -0.189 1.189 29 H 0.128 0.872 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.149 0.851 33 H 0.139 0.861 34 H 0.227 0.773 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.085 0.915 38 H 0.096 0.904 39 H 0.089 0.911 40 H 0.116 0.884 41 H 0.120 0.880 42 H 0.093 0.907 43 H 0.116 0.884 44 H 0.099 0.901 45 H 0.141 0.859 46 H 0.108 0.892 47 H 0.113 0.887 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.484 15.581 0.701 16.228 hybrid contribution -0.641 -1.307 0.575 1.565 sum -5.125 14.273 1.277 15.219 Atomic orbital electron populations 1.23021 0.79150 1.03963 1.00562 1.85856 1.21022 1.27335 1.91049 1.20094 0.93255 0.84603 1.16907 1.21048 0.98876 0.91674 1.02106 1.20712 0.92617 0.97472 1.26077 1.18925 0.88767 0.87383 0.91422 1.44243 1.07969 1.01595 1.83357 1.21212 0.94278 0.81786 1.00662 1.21757 0.97781 0.92049 1.03055 1.22302 0.96961 0.92751 0.99773 0.87736 1.23292 1.02323 0.96566 0.96617 1.23796 0.83796 0.95014 1.00857 1.88800 1.33237 1.67723 1.39087 1.23129 0.95691 0.90553 0.86446 1.24085 0.96092 0.93686 0.98472 1.66899 1.07834 1.34516 1.18080 1.24263 0.90683 1.01344 0.97019 1.68325 1.36155 0.95797 1.26509 1.18204 0.86758 0.91672 0.90989 1.19748 0.91914 0.92956 1.43723 0.89961 1.26907 0.99244 1.00636 0.92813 1.70245 1.10730 1.26479 1.29582 0.85138 0.77804 0.77789 0.78826 1.18320 1.19028 1.18936 0.87159 0.93417 0.93442 0.85072 0.86093 0.77339 0.92705 0.92898 0.91527 0.90361 0.91083 0.88364 0.88031 0.90671 0.88412 0.90089 0.85886 0.89241 0.88691 0.91264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.93 9.83 113.37 1.11 2.05 16 2 O -0.34 -15.96 9.61 -89.37 -0.86 -16.81 16 3 C -0.10 -5.21 6.74 23.22 0.16 -5.06 16 4 C -0.11 -5.06 9.12 22.51 0.21 -4.85 16 5 C -0.34 -15.10 9.33 22.70 0.21 -14.89 16 6 C 0.37 17.94 7.65 133.45 1.02 18.96 16 7 N -0.74 -27.97 5.72 -344.86 -1.97 -29.94 16 8 C 0.14 3.90 4.75 86.38 0.41 4.31 16 9 C -0.11 -2.22 3.74 30.60 0.11 -2.11 16 10 C -0.10 -1.63 2.79 -9.96 -0.03 -1.66 16 11 H 0.10 1.45 7.89 -2.39 -0.02 1.43 16 12 C -0.15 -2.40 5.96 31.98 0.19 -2.21 16 13 C 0.04 0.66 7.73 72.69 0.56 1.22 16 14 O -0.37 -8.42 11.29 -148.98 -1.68 -10.10 16 15 C 0.08 1.56 1.48 -10.47 -0.02 1.54 16 16 C 0.01 0.12 7.59 86.14 0.65 0.78 16 17 N -0.65 -12.42 8.53 -539.05 -4.60 -17.02 16 18 C 0.00 -0.05 8.31 86.15 0.72 0.67 16 19 N -0.54 -30.54 7.88 -186.18 -1.47 -32.00 16 20 C 0.25 14.59 6.56 40.23 0.26 14.86 16 21 C -0.45 -25.76 8.94 23.36 0.21 -25.55 16 22 H 0.08 4.63 7.31 -2.91 -0.02 4.61 16 23 C 0.03 1.34 5.50 85.28 0.47 1.81 16 24 N -0.75 -40.37 11.45 21.84 0.25 -40.12 16 25 Si 0.98 39.48 29.56 68.60 2.03 41.51 16 26 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 27 H -0.27 -10.17 7.11 99.48 0.71 -9.47 16 28 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 29 H 0.11 2.88 8.14 -2.39 -0.02 2.86 16 30 H 0.05 1.44 7.69 -2.38 -0.02 1.42 16 31 H 0.05 1.44 7.69 -2.38 -0.02 1.42 16 32 H 0.13 4.89 6.44 -2.91 -0.02 4.87 16 33 H 0.12 4.50 6.67 -2.91 -0.02 4.48 16 34 H 0.39 15.16 8.59 -92.71 -0.80 14.36 16 35 H 0.05 1.44 7.91 -2.39 -0.02 1.42 16 36 H 0.05 1.42 7.33 -2.39 -0.02 1.41 16 37 H 0.07 1.49 8.04 -2.39 -0.02 1.47 16 38 H 0.08 1.53 6.21 -2.38 -0.01 1.51 16 39 H 0.07 1.32 7.81 -2.39 -0.02 1.30 16 40 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 42 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.10 1.63 5.87 -2.39 -0.01 1.62 16 44 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 45 H 0.33 5.02 8.92 -89.69 -0.80 4.22 16 46 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 47 H 0.10 1.17 8.07 -2.38 -0.02 1.15 16 48 H 0.28 13.42 8.29 -92.71 -0.77 12.65 16 Total: -1.00 -71.34 380.92 -2.65 -73.98 By element: Atomic # 1 Polarization: 41.25 SS G_CDS: -0.60 Total: 40.65 kcal Atomic # 6 Polarization: -16.39 SS G_CDS: 6.25 Total: -10.14 kcal Atomic # 7 Polarization: -111.30 SS G_CDS: -7.79 Total: -119.09 kcal Atomic # 8 Polarization: -24.37 SS G_CDS: -2.54 Total: -26.91 kcal Atomic # 14 Polarization: 39.48 SS G_CDS: 2.03 Total: 41.51 kcal Total: -71.34 -2.65 -73.98 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163088355.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.426 kcal (2) G-P(sol) polarization free energy of solvation -71.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds