Wall clock time and date at job start Tue Mar 31 2020 17:38:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35620 * 116.99714 * 2 1 4 4 C 1.39158 * 120.50162 * 359.97438 * 3 2 1 5 5 C 1.38309 * 118.62421 * 179.97438 * 4 3 2 6 6 C 1.39945 * 119.60177 * 359.97438 * 5 4 3 7 7 N 1.38901 * 119.49815 * 179.97438 * 6 5 4 8 8 C 1.46498 * 120.00124 * 0.02562 * 7 6 5 9 9 C 1.53001 * 109.47387 * 179.97438 * 8 7 6 10 10 H 1.09000 * 109.85822 * 59.52190 * 9 8 7 11 11 O 1.43368 * 109.86556 * 298.54494 * 9 8 7 12 12 C 1.44003 * 109.97617 * 240.53442 * 11 9 8 13 13 C 1.53967 * 104.49049 * 23.59443 * 12 11 9 14 14 H 1.09006 * 109.61905 * 78.03589 * 13 12 11 15 15 C 1.50844 * 112.77371 * 200.47664 * 13 12 11 16 16 N 1.46638 * 111.88091 * 65.01741 * 15 13 12 17 17 C 1.47203 * 109.69304 * 60.67665 * 16 15 13 18 18 C 1.52653 * 108.38261 * 293.93341 * 17 16 15 19 19 C 1.53069 * 110.74817 * 61.58826 * 18 17 16 20 20 H 1.09005 * 112.25481 * 75.91081 * 19 18 17 21 21 N 1.31868 * 121.00244 * 0.26201 * 6 5 4 22 22 C 1.33822 * 121.47487 * 359.47414 * 21 6 5 23 23 C 1.40912 * 119.85403 * 180.24326 * 22 21 6 24 24 H 1.07995 * 120.00576 * 180.27310 * 23 22 21 25 25 C 1.40024 * 119.99658 * 0.27344 * 23 22 21 26 26 N 1.30782 * 120.00070 * 0.02562 * 25 23 22 27 27 Si 1.86799 * 120.00012 * 179.97438 * 25 23 22 28 28 H 1.48508 * 109.46747 * 90.00452 * 27 25 23 29 29 H 1.48501 * 109.47302 * 210.00068 * 27 25 23 30 30 H 1.48493 * 109.47223 * 330.00456 * 27 25 23 31 31 H 1.09000 * 109.46952 * 60.00464 * 1 2 3 32 32 H 1.09001 * 109.46548 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47058 * 299.99919 * 1 2 3 34 34 H 1.07991 * 120.69053 * 0.02562 * 4 3 2 35 35 H 1.08007 * 120.20193 * 179.97438 * 5 4 3 36 36 H 0.96998 * 119.99595 * 180.02562 * 7 6 5 37 37 H 1.08999 * 109.47244 * 59.99303 * 8 7 6 38 38 H 1.09009 * 109.46960 * 299.99301 * 8 7 6 39 39 H 1.08998 * 110.42904 * 264.84555 * 12 11 9 40 40 H 1.08995 * 110.53340 * 142.39729 * 12 11 9 41 41 H 1.08998 * 108.99733 * 304.39426 * 15 13 12 42 42 H 1.08999 * 108.99851 * 185.63347 * 15 13 12 43 43 H 1.00901 * 111.00226 * 183.71095 * 16 15 13 44 44 H 1.09005 * 109.68178 * 174.21297 * 17 16 15 45 45 H 1.08993 * 109.68368 * 53.66179 * 17 16 15 46 46 H 1.09002 * 109.21646 * 181.90374 * 18 17 16 47 47 H 1.08999 * 109.21445 * 301.27381 * 18 17 16 48 48 H 0.97000 * 120.00332 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0446 1.2084 0.0000 4 6 1.2969 2.3820 -0.0005 5 6 1.9648 3.5932 0.0000 6 6 3.3641 3.6109 0.0017 7 7 4.0327 4.8285 0.0017 8 6 3.2732 6.0812 0.0006 9 6 4.2422 7.2652 0.0015 10 1 4.8802 7.2223 -0.8813 11 8 5.0480 7.2344 1.1869 12 6 4.8360 8.4324 1.9572 13 6 3.4452 8.9292 1.5220 14 1 2.6742 8.3376 2.0157 15 6 3.2287 10.3923 1.8182 16 7 4.1302 11.2469 1.0389 17 6 3.8875 11.0433 -0.3986 18 6 4.2935 9.6162 -0.7580 19 6 3.4482 8.6010 0.0153 20 1 2.4416 8.5064 -0.3921 21 7 4.0576 2.4894 -0.0025 22 6 3.4544 1.2948 0.0021 23 6 4.2291 0.1178 0.0026 24 1 3.7448 -0.8475 0.0018 25 6 5.6269 0.1997 0.0041 26 7 6.2135 1.3687 0.0056 27 14 6.6540 -1.3605 0.0055 28 1 6.9278 -1.7741 -1.3943 29 1 7.9382 -1.1073 0.7069 30 1 5.9127 -2.4406 0.7048 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3632 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 0.2175 2.3479 -0.0005 35 1 1.4098 4.5197 -0.0008 36 1 5.0024 4.8492 0.0024 37 1 2.6446 6.1258 0.8900 38 1 2.6462 6.1252 -0.8901 39 1 5.5968 9.1763 1.7209 40 1 4.8431 8.2075 3.0237 41 1 3.4017 10.5688 2.8798 42 1 2.1977 10.6538 1.5799 43 1 4.0164 12.2173 1.2910 44 1 4.4834 11.7507 -0.9753 45 1 2.8297 11.1900 -0.6168 46 1 4.1510 9.4612 -1.8274 47 1 5.3450 9.4695 -0.5113 48 1 7.1818 1.4255 0.0062 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163166926.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:38:57 Heat of formation + Delta-G solvation = -58.987408 kcal Electronic energy + Delta-G solvation = -28966.727472 eV Core-core repulsion = 25020.860425 eV Total energy + Delta-G solvation = -3945.867047 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.62015 -40.57384 -38.65825 -37.75310 -36.30829 -34.97803 -33.28573 -32.45190 -32.15728 -31.16727 -29.31341 -27.99239 -26.83623 -26.20512 -24.91322 -23.55455 -23.37152 -22.17971 -21.97628 -19.94582 -19.27159 -18.38300 -18.11499 -17.99247 -17.00182 -16.74825 -16.66667 -16.34565 -16.20522 -16.06260 -15.49052 -15.31933 -14.99940 -14.85414 -14.54398 -14.38044 -14.19734 -13.96376 -13.74342 -13.53090 -13.32722 -13.28295 -13.20256 -12.88510 -12.83381 -12.51905 -12.49060 -12.09680 -12.06153 -11.89263 -11.77988 -11.56154 -11.26955 -11.21979 -11.20038 -10.52060 -10.11448 -9.89118 -9.54954 -9.38832 -8.23621 -8.04069 -6.31708 1.00876 1.29139 1.41724 1.55516 1.58912 2.27157 2.51517 2.92433 2.95052 3.08481 3.29609 3.35020 3.65998 3.73792 3.98036 3.99992 4.19424 4.24191 4.27825 4.28927 4.40498 4.44543 4.46168 4.51499 4.52778 4.58123 4.66941 4.67912 4.72968 4.76131 4.80644 4.88448 4.93288 4.95343 4.97480 5.06033 5.11421 5.19086 5.33964 5.36753 5.52323 5.73173 5.86926 6.01689 6.08679 6.27731 6.44061 6.53297 6.76394 6.86283 7.02297 7.35529 8.32379 8.51099 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.015232 B = 0.002804 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1837.795124 B = 9982.590347 C =11340.469346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.337 6.337 3 C -0.100 4.100 4 C -0.111 4.111 5 C -0.345 4.345 6 C 0.374 3.626 7 N -0.730 5.730 8 C 0.136 3.864 9 C 0.079 3.921 10 H 0.080 0.920 11 O -0.401 6.401 12 C 0.058 3.942 13 C -0.113 4.113 14 H 0.081 0.919 15 C 0.074 3.926 16 N -0.692 5.692 17 C 0.058 3.942 18 C -0.112 4.112 19 C -0.098 4.098 20 H 0.110 0.890 21 N -0.546 5.546 22 C 0.252 3.748 23 C -0.451 4.451 24 H 0.084 0.916 25 C 0.023 3.977 26 N -0.749 5.749 27 Si 0.987 3.013 28 H -0.262 1.262 29 H -0.267 1.267 30 H -0.258 1.258 31 H 0.047 0.953 32 H 0.111 0.889 33 H 0.046 0.954 34 H 0.133 0.867 35 H 0.119 0.881 36 H 0.392 0.608 37 H 0.049 0.951 38 H 0.069 0.931 39 H 0.073 0.927 40 H 0.079 0.921 41 H 0.085 0.915 42 H 0.045 0.955 43 H 0.356 0.644 44 H 0.087 0.913 45 H 0.043 0.957 46 H 0.079 0.921 47 H 0.057 0.943 48 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.218 19.450 0.487 20.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.252 6.252 3 C -0.148 4.148 4 C -0.136 4.136 5 C -0.371 4.371 6 C 0.136 3.864 7 N -0.365 5.365 8 C 0.011 3.989 9 C 0.021 3.979 10 H 0.097 0.903 11 O -0.321 6.321 12 C -0.018 4.018 13 C -0.132 4.132 14 H 0.100 0.900 15 C -0.056 4.056 16 N -0.324 5.324 17 C -0.072 4.072 18 C -0.150 4.150 19 C -0.117 4.117 20 H 0.128 0.872 21 N -0.270 5.270 22 C 0.124 3.876 23 C -0.483 4.483 24 H 0.103 0.897 25 C -0.199 4.199 26 N -0.371 5.371 27 Si 0.807 3.193 28 H -0.187 1.187 29 H -0.191 1.191 30 H -0.182 1.182 31 H 0.066 0.934 32 H 0.129 0.871 33 H 0.065 0.935 34 H 0.151 0.849 35 H 0.137 0.863 36 H 0.225 0.775 37 H 0.067 0.933 38 H 0.087 0.913 39 H 0.091 0.909 40 H 0.097 0.903 41 H 0.104 0.896 42 H 0.063 0.937 43 H 0.175 0.825 44 H 0.106 0.894 45 H 0.061 0.939 46 H 0.097 0.903 47 H 0.076 0.924 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.555 18.956 0.582 19.505 hybrid contribution -1.271 -0.087 -0.072 1.276 sum -5.825 18.869 0.510 19.755 Atomic orbital electron populations 1.23025 0.79134 1.04001 1.00555 1.85852 1.21041 1.27219 1.91052 1.20075 0.93200 0.84611 1.16905 1.21026 0.98866 0.91559 1.02107 1.20680 0.92469 0.97515 1.26477 1.18946 0.88802 0.87301 0.91373 1.44131 1.07909 1.01461 1.82981 1.21642 0.94125 0.82397 1.00747 1.23278 0.91938 0.94078 0.88565 0.90267 1.88576 1.65826 1.42049 1.35662 1.23333 0.96723 0.86089 0.95610 1.22049 0.97824 0.97785 0.95556 0.90027 1.21166 0.94802 0.90631 0.98973 1.60711 1.55497 1.11673 1.04557 1.21947 0.99722 0.96403 0.89080 1.21600 0.99380 0.94131 0.99884 1.22666 1.00192 0.92734 0.96114 0.87158 1.68327 1.36212 0.95831 1.26615 1.18234 0.86830 0.91624 0.90959 1.19733 0.91904 0.92944 1.43739 0.89739 1.26977 0.99335 1.00744 0.92814 1.70271 1.10748 1.26684 1.29435 0.85155 0.77229 0.77518 0.79427 1.18668 1.19115 1.18220 0.93393 0.87060 0.93493 0.84923 0.86291 0.77492 0.93256 0.91288 0.90903 0.90313 0.89625 0.93718 0.82461 0.89448 0.93896 0.90284 0.92372 0.91310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.96 9.83 113.37 1.11 2.07 16 2 O -0.34 -16.36 9.61 -89.32 -0.86 -17.22 16 3 C -0.10 -5.37 6.74 23.23 0.16 -5.21 16 4 C -0.11 -5.22 9.12 22.51 0.21 -5.02 16 5 C -0.35 -16.22 9.33 22.70 0.21 -16.00 16 6 C 0.37 19.40 7.65 133.45 1.02 20.42 16 7 N -0.73 -31.79 5.64 -344.84 -1.94 -33.73 16 8 C 0.14 4.37 4.54 86.38 0.39 4.76 16 9 C 0.08 2.13 2.86 31.42 0.09 2.22 16 10 H 0.08 2.18 7.73 -2.39 -0.02 2.16 16 11 O -0.40 -12.62 10.87 -148.98 -1.62 -14.24 16 12 C 0.06 1.37 6.78 72.31 0.49 1.86 16 13 C -0.11 -2.06 2.97 -10.76 -0.03 -2.09 16 14 H 0.08 1.55 8.14 -2.38 -0.02 1.53 16 15 C 0.07 0.96 5.91 85.65 0.51 1.46 16 16 N -0.69 -8.55 6.55 -518.22 -3.39 -11.94 16 17 C 0.06 0.69 6.55 86.13 0.56 1.25 16 18 C -0.11 -1.81 4.85 30.50 0.15 -1.66 16 19 C -0.10 -1.83 3.16 -9.54 -0.03 -1.86 16 20 H 0.11 1.78 7.99 -2.38 -0.02 1.76 16 21 N -0.55 -32.47 7.88 -186.17 -1.47 -33.93 16 22 C 0.25 15.18 6.56 40.23 0.26 15.45 16 23 C -0.45 -26.61 8.94 23.36 0.21 -26.40 16 24 H 0.08 4.86 7.31 -2.91 -0.02 4.84 16 25 C 0.02 1.25 5.50 85.28 0.47 1.71 16 26 N -0.75 -42.58 11.45 21.84 0.25 -42.33 16 27 Si 0.99 40.98 29.56 68.60 2.03 43.00 16 28 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 29 H -0.27 -10.47 7.11 99.48 0.71 -9.76 16 30 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 31 H 0.05 1.50 7.69 -2.39 -0.02 1.48 16 32 H 0.11 3.00 8.14 -2.39 -0.02 2.98 16 33 H 0.05 1.48 7.69 -2.39 -0.02 1.46 16 34 H 0.13 5.16 6.43 -2.92 -0.02 5.14 16 35 H 0.12 4.77 6.67 -2.91 -0.02 4.75 16 36 H 0.39 18.05 8.52 -92.71 -0.79 17.26 16 37 H 0.05 1.61 7.92 -2.39 -0.02 1.59 16 38 H 0.07 2.05 7.92 -2.38 -0.02 2.03 16 39 H 0.07 1.68 7.39 -2.39 -0.02 1.66 16 40 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 41 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 42 H 0.04 0.50 8.10 -2.39 -0.02 0.48 16 43 H 0.36 2.93 8.90 -89.69 -0.80 2.13 16 44 H 0.09 0.87 8.14 -2.38 -0.02 0.85 16 45 H 0.04 0.45 8.07 -2.39 -0.02 0.44 16 46 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 47 H 0.06 1.17 7.24 -2.39 -0.02 1.15 16 48 H 0.28 14.23 8.30 -92.71 -0.77 13.46 16 Total: -1.00 -73.85 376.84 -1.82 -75.68 By element: Atomic # 1 Polarization: 42.35 SS G_CDS: -0.60 Total: 41.75 kcal Atomic # 6 Polarization: -12.81 SS G_CDS: 5.78 Total: -7.04 kcal Atomic # 7 Polarization: -115.38 SS G_CDS: -6.55 Total: -121.94 kcal Atomic # 8 Polarization: -28.98 SS G_CDS: -2.48 Total: -31.46 kcal Atomic # 14 Polarization: 40.98 SS G_CDS: 2.03 Total: 43.00 kcal Total: -73.85 -1.82 -75.68 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163166926.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.689 kcal (2) G-P(sol) polarization free energy of solvation -73.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds