Wall clock time and date at job start Tue Mar 31 2020 17:39:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35618 * 116.99550 * 2 1 4 4 C 1.39161 * 120.50407 * 0.02562 * 3 2 1 5 5 C 1.38312 * 118.62758 * 179.97438 * 4 3 2 6 6 C 1.39937 * 119.59511 * 0.02562 * 5 4 3 7 7 N 1.38901 * 119.49582 * 179.97438 * 6 5 4 8 8 C 1.46498 * 119.99972 * 359.97438 * 7 6 5 9 9 C 1.52999 * 109.47258 * 180.02562 * 8 7 6 10 10 H 1.08999 * 110.34318 * 304.17732 * 9 8 7 11 11 O 1.43870 * 110.38550 * 66.45198 * 9 8 7 12 12 C 1.43668 * 109.68189 * 144.39046 * 11 9 8 13 13 C 1.53844 * 107.00266 * 358.05677 * 12 11 9 14 14 H 1.08998 * 109.17604 * 93.37187 * 13 12 11 15 15 C 1.50087 * 112.36294 * 214.09093 * 13 12 11 16 16 N 1.44614 * 116.03895 * 76.75577 * 15 13 12 17 17 C 1.45689 * 114.94761 * 45.12538 * 16 15 13 18 18 C 1.52406 * 110.36935 * 304.84427 * 17 16 15 19 19 C 1.52969 * 109.93198 * 60.81043 * 18 17 16 20 20 H 1.09002 * 113.06657 * 71.43617 * 19 18 17 21 21 N 1.31869 * 121.00964 * 359.73137 * 6 5 4 22 22 C 1.33828 * 121.47124 * 0.53465 * 21 6 5 23 23 C 1.40911 * 119.85026 * 179.74894 * 22 21 6 24 24 H 1.08001 * 120.00276 * 179.72017 * 23 22 21 25 25 C 1.40030 * 119.99800 * 359.72640 * 23 22 21 26 26 N 1.30786 * 119.99720 * 180.02562 * 25 23 22 27 27 Si 1.86800 * 120.00374 * 359.97438 * 25 23 22 28 28 H 1.48492 * 109.47488 * 180.02562 * 27 25 23 29 29 H 1.48501 * 109.46799 * 300.00679 * 27 25 23 30 30 H 1.48500 * 109.46997 * 59.99935 * 27 25 23 31 31 H 1.08999 * 109.47502 * 60.00395 * 1 2 3 32 32 H 1.09000 * 109.46718 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.47127 * 299.99874 * 1 2 3 34 34 H 1.07997 * 120.68355 * 359.96191 * 4 3 2 35 35 H 1.08000 * 120.20144 * 179.97438 * 5 4 3 36 36 H 0.97002 * 120.00297 * 179.97438 * 7 6 5 37 37 H 1.09002 * 109.47399 * 299.99860 * 8 7 6 38 38 H 1.09000 * 109.46971 * 60.00293 * 8 7 6 39 39 H 1.09004 * 109.92423 * 117.39376 * 12 11 9 40 40 H 1.09003 * 109.92406 * 238.50712 * 12 11 9 41 41 H 1.08997 * 108.16460 * 198.46388 * 15 13 12 42 42 H 1.08997 * 108.16480 * 315.05429 * 15 13 12 43 43 H 1.00901 * 110.99619 * 172.12832 * 16 15 13 44 44 H 1.08998 * 109.32015 * 184.57137 * 17 16 15 45 45 H 1.08999 * 109.17551 * 65.02427 * 17 16 15 46 46 H 1.08999 * 109.39591 * 300.66509 * 18 17 16 47 47 H 1.09004 * 109.39041 * 180.95134 * 18 17 16 48 48 H 0.97001 * 119.99841 * 359.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0446 1.2084 0.0000 4 6 1.2969 2.3821 0.0005 5 6 1.9648 3.5933 0.0011 6 6 3.3640 3.6109 0.0005 7 7 4.0326 4.8285 0.0005 8 6 3.2731 6.0812 0.0005 9 6 4.2422 7.2652 -0.0002 10 1 4.9268 7.1950 0.8451 11 8 4.9760 7.3114 -1.2368 12 6 5.1986 8.6790 -1.6165 13 6 4.5104 9.5576 -0.5576 14 1 5.2346 9.8242 0.2121 15 6 3.9426 10.8178 -1.1426 16 7 2.7053 10.6752 -1.8776 17 6 1.6978 9.8459 -1.2297 18 6 2.2694 8.4700 -0.9091 19 6 3.4573 8.6082 0.0448 20 1 3.1629 8.8925 1.0551 21 7 4.0576 2.4894 0.0048 22 6 3.4543 1.2948 -0.0009 23 6 4.2291 0.1178 -0.0014 24 1 3.7448 -0.8475 -0.0013 25 6 5.6270 0.1998 -0.0018 26 7 6.3461 -0.8926 -0.0028 27 14 6.4648 1.8694 -0.0024 28 1 7.9381 1.6840 -0.0034 29 1 6.0605 2.6255 -1.2149 30 1 6.0614 2.6260 1.2100 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 0.2175 2.3478 0.0003 35 1 1.4097 4.5197 0.0011 36 1 5.0024 4.8493 0.0005 37 1 2.6453 6.1255 -0.8895 38 1 2.6454 6.1255 0.8905 39 1 6.2679 8.8898 -1.6361 40 1 4.7651 8.8671 -2.5987 41 1 3.7756 11.5246 -0.3298 42 1 4.6878 11.2476 -1.8119 43 1 2.3264 11.5768 -2.1259 44 1 0.8409 9.7345 -1.8941 45 1 1.3776 10.3276 -0.3059 46 1 2.5993 7.9912 -1.8310 47 1 1.4985 7.8579 -0.4408 48 1 5.9110 -1.7596 -0.0028 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163166928.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:39:00 Heat of formation + Delta-G solvation = -76.687651 kcal Electronic energy + Delta-G solvation = -29321.203165 eV Core-core repulsion = 25374.568578 eV Total energy + Delta-G solvation = -3946.634587 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.70134 -40.93712 -38.91151 -37.76704 -36.64207 -35.36220 -33.47543 -32.77021 -32.71312 -31.20559 -29.36093 -28.07509 -26.80326 -26.10424 -25.46047 -23.80457 -23.50247 -22.30169 -21.49046 -20.27545 -19.97818 -18.61408 -18.31350 -17.98779 -17.48314 -16.96249 -16.58274 -16.38536 -16.33611 -15.80871 -15.53480 -15.39926 -15.30813 -15.09695 -14.86949 -14.55512 -14.25737 -14.14622 -13.85248 -13.78654 -13.58287 -13.50305 -13.35045 -13.02330 -12.75286 -12.64337 -12.42586 -12.18580 -12.03211 -11.92236 -11.76711 -11.43328 -11.31752 -11.24904 -11.22436 -10.46649 -10.37151 -10.25583 -9.71817 -9.23814 -9.14848 -8.32730 -6.60658 0.70245 1.00935 1.58508 1.74115 2.01684 2.36142 2.48817 2.70656 2.83590 2.93601 3.27642 3.33025 3.56471 3.61319 3.76742 4.03468 4.08419 4.12582 4.17755 4.29847 4.33135 4.35907 4.43884 4.47714 4.48527 4.49237 4.61145 4.67159 4.68675 4.73215 4.74152 4.79902 4.80059 4.92379 4.94680 5.00801 5.12281 5.19047 5.29196 5.39012 5.41747 5.53068 5.65928 5.95316 6.04407 6.06706 6.30927 6.47626 6.58902 6.59229 6.73369 7.09315 7.71019 7.97720 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.015150 B = 0.003281 C = 0.002759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1847.682233 B = 8532.477188 C =10144.960755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.342 6.342 3 C -0.089 4.089 4 C -0.090 4.090 5 C -0.320 4.320 6 C 0.402 3.598 7 N -0.734 5.734 8 C 0.139 3.861 9 C 0.071 3.929 10 H 0.078 0.922 11 O -0.401 6.401 12 C 0.055 3.945 13 C -0.112 4.112 14 H 0.097 0.903 15 C 0.088 3.912 16 N -0.717 5.717 17 C 0.074 3.926 18 C -0.118 4.118 19 C -0.098 4.098 20 H 0.119 0.881 21 N -0.623 5.623 22 C 0.261 3.739 23 C -0.493 4.493 24 H 0.065 0.935 25 C 0.014 3.986 26 N -0.830 5.830 27 Si 1.202 2.798 28 H -0.336 1.336 29 H -0.297 1.297 30 H -0.290 1.290 31 H 0.054 0.946 32 H 0.107 0.893 33 H 0.055 0.945 34 H 0.147 0.853 35 H 0.141 0.859 36 H 0.393 0.607 37 H 0.067 0.933 38 H 0.086 0.914 39 H 0.073 0.927 40 H 0.068 0.932 41 H 0.036 0.964 42 H 0.079 0.921 43 H 0.362 0.638 44 H 0.080 0.920 45 H 0.036 0.964 46 H 0.056 0.944 47 H 0.082 0.918 48 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.994 26.108 0.380 27.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.257 6.257 3 C -0.136 4.136 4 C -0.114 4.114 5 C -0.345 4.345 6 C 0.166 3.834 7 N -0.369 5.369 8 C 0.015 3.985 9 C 0.013 3.987 10 H 0.096 0.904 11 O -0.322 6.322 12 C -0.021 4.021 13 C -0.131 4.131 14 H 0.115 0.885 15 C -0.041 4.041 16 N -0.352 5.352 17 C -0.055 4.055 18 C -0.156 4.156 19 C -0.117 4.117 20 H 0.137 0.863 21 N -0.354 5.354 22 C 0.135 3.865 23 C -0.526 4.526 24 H 0.083 0.917 25 C -0.202 4.202 26 N -0.454 5.454 27 Si 1.038 2.962 28 H -0.271 1.271 29 H -0.226 1.226 30 H -0.219 1.219 31 H 0.072 0.928 32 H 0.125 0.875 33 H 0.074 0.926 34 H 0.165 0.835 35 H 0.159 0.841 36 H 0.227 0.773 37 H 0.085 0.915 38 H 0.104 0.896 39 H 0.091 0.909 40 H 0.087 0.913 41 H 0.054 0.946 42 H 0.097 0.903 43 H 0.183 0.817 44 H 0.098 0.902 45 H 0.054 0.946 46 H 0.074 0.926 47 H 0.100 0.900 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -7.499 25.981 -0.054 27.042 hybrid contribution -2.339 -0.864 0.573 2.559 sum -9.839 25.117 0.518 26.980 Atomic orbital electron populations 1.23090 0.78417 1.04176 1.01152 1.85889 1.21648 1.27237 1.90924 1.19704 0.92345 0.85126 1.16458 1.21213 0.99660 0.90957 0.99616 1.20694 0.91369 0.98328 1.24157 1.18466 0.89493 0.85132 0.90264 1.44371 1.08261 1.01866 1.82374 1.21660 0.93881 0.80613 1.02335 1.23461 0.92859 0.94818 0.87525 0.90406 1.88630 1.76050 1.26918 1.40557 1.23256 1.00029 0.80306 0.98536 1.21856 0.97723 0.95620 0.97935 0.88460 1.20432 0.92116 0.94815 0.96713 1.57723 1.06095 1.21291 1.50120 1.21393 0.93826 0.92751 0.97539 1.21572 0.97190 0.97756 0.99056 1.22709 0.95599 0.92297 1.01099 0.86307 1.65738 1.37649 0.97834 1.34191 1.17890 0.88494 0.90099 0.90048 1.20544 0.93713 0.93181 1.45179 0.91690 1.28543 0.95598 1.07837 0.88230 1.70694 1.40588 1.00093 1.34034 0.81075 0.68446 0.68234 0.78482 1.27103 1.22606 1.21856 0.92761 0.87470 0.92646 0.83544 0.84099 0.77342 0.91506 0.89571 0.90928 0.91350 0.94610 0.90277 0.81679 0.90184 0.94591 0.92564 0.89976 0.91015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.84 9.83 113.37 1.11 1.95 16 2 O -0.34 -16.02 9.61 -89.30 -0.86 -16.87 16 3 C -0.09 -4.41 6.74 23.23 0.16 -4.25 16 4 C -0.09 -3.67 9.12 22.51 0.21 -3.47 16 5 C -0.32 -12.61 9.33 22.70 0.21 -12.40 16 6 C 0.40 18.07 7.65 133.45 1.02 19.09 16 7 N -0.73 -27.30 5.71 -344.86 -1.97 -29.27 16 8 C 0.14 3.62 3.72 86.38 0.32 3.94 16 9 C 0.07 1.55 3.17 31.50 0.10 1.65 16 10 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 11 O -0.40 -10.85 10.71 -148.98 -1.60 -12.44 16 12 C 0.05 1.07 6.78 72.27 0.49 1.56 16 13 C -0.11 -1.55 2.85 -11.09 -0.03 -1.58 16 14 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 15 C 0.09 0.97 5.84 85.79 0.50 1.47 16 16 N -0.72 -8.51 6.67 -528.34 -3.52 -12.04 16 17 C 0.07 0.88 6.59 86.34 0.57 1.45 16 18 C -0.12 -1.83 3.85 30.39 0.12 -1.71 16 19 C -0.10 -1.45 3.51 -9.54 -0.03 -1.49 16 20 H 0.12 1.31 8.14 -2.39 -0.02 1.29 16 21 N -0.62 -33.21 4.50 -186.18 -0.84 -34.04 16 22 C 0.26 14.76 6.44 40.23 0.26 15.02 16 23 C -0.49 -29.95 9.38 23.36 0.22 -29.73 16 24 H 0.06 4.12 7.51 -2.91 -0.02 4.10 16 25 C 0.01 0.83 5.52 85.28 0.47 1.30 16 26 N -0.83 -49.47 13.66 21.84 0.30 -49.17 16 27 Si 1.20 63.25 25.44 68.60 1.75 64.99 16 28 H -0.34 -17.26 7.11 99.48 0.71 -16.55 16 29 H -0.30 -15.81 6.94 99.48 0.69 -15.12 16 30 H -0.29 -14.96 6.93 99.48 0.69 -14.27 16 31 H 0.05 1.53 7.69 -2.39 -0.02 1.51 16 32 H 0.11 2.77 8.14 -2.39 -0.02 2.75 16 33 H 0.05 1.54 7.69 -2.39 -0.02 1.53 16 34 H 0.15 4.71 6.43 -2.91 -0.02 4.69 16 35 H 0.14 4.41 6.67 -2.91 -0.02 4.39 16 36 H 0.39 15.30 8.59 -92.71 -0.80 14.50 16 37 H 0.07 1.77 6.25 -2.39 -0.01 1.76 16 38 H 0.09 1.93 7.91 -2.39 -0.02 1.91 16 39 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 40 H 0.07 1.44 7.93 -2.39 -0.02 1.42 16 41 H 0.04 0.31 8.14 -2.39 -0.02 0.30 16 42 H 0.08 0.80 8.06 -2.39 -0.02 0.78 16 43 H 0.36 2.90 8.87 -89.69 -0.80 2.10 16 44 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 45 H 0.04 0.36 8.14 -2.39 -0.02 0.34 16 46 H 0.06 1.20 6.81 -2.39 -0.02 1.18 16 47 H 0.08 1.14 7.42 -2.39 -0.02 1.12 16 48 H 0.28 16.18 8.72 -92.71 -0.81 15.37 16 Total: -1.00 -74.32 369.28 -1.72 -76.04 By element: Atomic # 1 Polarization: 20.65 SS G_CDS: -0.67 Total: 19.98 kcal Atomic # 6 Polarization: -12.87 SS G_CDS: 5.69 Total: -7.18 kcal Atomic # 7 Polarization: -118.49 SS G_CDS: -6.03 Total: -124.52 kcal Atomic # 8 Polarization: -26.86 SS G_CDS: -2.45 Total: -29.32 kcal Atomic # 14 Polarization: 63.25 SS G_CDS: 1.75 Total: 64.99 kcal Total: -74.32 -1.72 -76.04 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163166928.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.646 kcal (2) G-P(sol) polarization free energy of solvation -74.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds