Wall clock time and date at job start Tue Mar 31 2020 17:39:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35620 * 116.99959 * 2 1 4 4 C 1.39157 * 120.49893 * 0.02562 * 3 2 1 5 5 C 1.38314 * 118.62515 * 180.02562 * 4 3 2 6 6 C 1.39948 * 119.59227 * 359.97438 * 5 4 3 7 7 N 1.38898 * 119.49256 * 179.97438 * 6 5 4 8 8 C 1.46501 * 120.00243 * 0.02562 * 7 6 5 9 9 H 1.09005 * 109.63354 * 325.25146 * 8 7 6 10 10 C 1.53180 * 109.55855 * 85.48624 * 8 7 6 11 11 C 1.53093 * 109.24571 * 177.24686 * 10 8 7 12 12 O 1.42996 * 109.39451 * 301.98583 * 11 10 8 13 13 C 1.42335 * 114.19449 * 60.18862 * 12 11 10 14 14 C 1.53843 * 110.23852 * 178.22710 * 13 12 11 15 15 C 1.54479 * 104.91377 * 241.01483 * 14 13 12 16 16 N 1.48592 * 104.60945 * 23.78065 * 15 14 13 17 17 C 1.48662 * 104.28000 * 320.76840 * 16 15 14 18 18 C 1.52595 * 110.73058 * 300.31893 * 13 12 11 19 19 N 1.31861 * 121.01048 * 0.25708 * 6 5 4 20 20 C 1.33830 * 121.47173 * 359.48586 * 19 6 5 21 21 C 1.40917 * 119.84819 * 180.26526 * 20 19 6 22 22 H 1.08002 * 119.99765 * 180.24491 * 21 20 19 23 23 C 1.40020 * 120.00229 * 0.24054 * 21 20 19 24 24 N 1.30786 * 120.00040 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00271 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.46947 * 0.02562 * 25 23 21 27 27 H 1.48492 * 109.47242 * 120.00255 * 25 23 21 28 28 H 1.48501 * 109.47205 * 240.00588 * 25 23 21 29 29 H 1.08996 * 109.47018 * 299.99739 * 1 2 3 30 30 H 1.09002 * 109.47230 * 60.00210 * 1 2 3 31 31 H 1.09000 * 109.47179 * 179.97438 * 1 2 3 32 32 H 1.07990 * 120.69066 * 359.97438 * 4 3 2 33 33 H 1.07991 * 120.20196 * 180.02562 * 5 4 3 34 34 H 0.97007 * 120.00444 * 180.02562 * 7 6 5 35 35 H 1.09004 * 109.49240 * 57.32978 * 10 8 7 36 36 H 1.09002 * 109.52400 * 297.18684 * 10 8 7 37 37 H 1.09002 * 109.48741 * 182.00091 * 11 10 8 38 38 H 1.09002 * 109.48265 * 61.96396 * 11 10 8 39 39 H 1.08998 * 110.35274 * 359.88323 * 14 13 12 40 40 H 1.09005 * 110.35096 * 122.16248 * 14 13 12 41 41 H 1.08999 * 110.40589 * 142.55879 * 15 14 13 42 42 H 1.08998 * 110.41401 * 264.88014 * 15 14 13 43 43 H 1.00903 * 110.99888 * 201.18105 * 16 15 14 44 44 H 1.08998 * 110.42728 * 280.35618 * 17 16 15 45 45 H 1.09006 * 110.42330 * 157.87008 * 17 16 15 46 46 H 1.08996 * 109.51539 * 176.17358 * 18 13 12 47 47 H 1.08998 * 109.51481 * 296.28968 * 18 13 12 48 48 H 0.96995 * 119.99786 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2084 0.0000 4 6 1.2970 2.3820 0.0005 5 6 1.9649 3.5932 0.0000 6 6 3.3642 3.6108 -0.0006 7 7 4.0328 4.8282 -0.0017 8 6 3.2734 6.0810 -0.0017 9 1 2.3617 5.9567 -0.5861 10 6 2.9115 6.4614 1.4373 11 6 2.1784 7.8054 1.4349 12 8 3.0102 8.7989 0.8301 13 6 3.3672 8.5183 -0.5189 14 6 4.2219 9.6619 -1.0921 15 6 3.4053 10.2099 -2.2834 16 7 2.0008 9.8303 -1.9813 17 6 2.1065 8.4656 -1.4012 18 6 4.1264 7.1980 -0.6133 19 7 4.0577 2.4892 -0.0056 20 6 3.4544 1.2947 -0.0002 21 6 4.2291 0.1176 -0.0002 22 1 3.7447 -0.8477 0.0002 23 6 5.6269 0.1995 -0.0008 24 7 6.2135 1.3684 -0.0009 25 14 6.6540 -1.3608 -0.0016 26 1 5.7567 -2.5440 -0.0020 27 1 7.5103 -1.3891 -1.2144 28 1 7.5114 -1.3897 1.2106 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 0.2176 2.3479 0.0005 33 1 1.4099 4.5196 0.0008 34 1 5.0027 4.8491 -0.0024 35 1 3.8216 6.5443 2.0315 36 1 2.2652 5.6950 1.8651 37 1 1.9504 8.0970 2.4602 38 1 1.2518 7.7130 0.8685 39 1 4.3669 10.4395 -0.3421 40 1 5.1838 9.2810 -1.4353 41 1 3.5014 11.2940 -2.3434 42 1 3.7339 9.7479 -3.2143 43 1 1.4395 9.8242 -2.8198 44 1 2.2259 7.7245 -2.1915 45 1 1.2280 8.2402 -0.7965 46 1 4.3302 6.9692 -1.6593 47 1 5.0668 7.2789 -0.0683 48 1 7.1818 1.4251 -0.0009 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163315381.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:39:11 Heat of formation + Delta-G solvation = -30.461846 kcal Electronic energy + Delta-G solvation = -29513.976954 eV Core-core repulsion = 25569.346868 eV Total energy + Delta-G solvation = -3944.630086 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.55934 -38.81222 -37.26309 -36.56516 -35.14822 -33.44548 -31.52667 -31.19268 -30.27626 -29.29683 -28.44393 -26.53186 -26.12285 -24.91476 -23.78789 -22.50779 -21.50385 -21.13543 -20.09153 -19.17446 -17.47733 -17.04717 -16.82824 -16.51148 -16.06207 -15.65789 -15.13865 -14.75975 -14.64964 -14.61137 -14.55509 -14.26757 -13.60470 -13.46550 -13.27036 -12.78162 -12.71197 -12.48622 -12.37818 -12.31670 -12.03019 -11.80695 -11.65309 -11.45724 -11.31480 -11.26961 -11.19835 -11.07911 -10.86838 -10.58137 -10.43291 -10.35978 -10.10656 -9.80041 -9.47697 -9.44468 -8.81423 -8.45710 -8.02080 -7.67374 -6.38548 -6.29330 -4.36245 2.80719 3.12300 3.12420 3.18371 3.26191 3.67895 3.93590 3.99159 4.12901 4.44919 4.50028 4.61471 4.77910 4.90960 4.93837 4.99142 5.08518 5.19294 5.28288 5.33077 5.39290 5.51697 5.55553 5.67279 5.72675 5.79264 5.80073 5.80163 5.90922 5.93371 5.97793 5.99886 6.09244 6.11704 6.21368 6.33565 6.41648 6.48995 6.72029 6.80088 7.03493 7.20111 7.29511 7.30592 7.49061 7.69261 8.20481 8.28579 8.44128 8.68703 8.79604 9.17592 10.17618 10.34804 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014539 B = 0.003142 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1925.420516 B = 8910.446542 C =10072.309351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.312 6.312 3 C -0.077 4.077 4 C -0.114 4.114 5 C -0.348 4.348 6 C 0.395 3.605 7 N -0.732 5.732 8 C 0.169 3.831 9 H 0.075 0.925 10 C -0.172 4.172 11 C 0.061 3.939 12 O -0.363 6.363 13 C 0.124 3.876 14 C -0.113 4.113 15 C 0.035 3.965 16 N -0.661 5.661 17 C 0.007 3.993 18 C -0.147 4.147 19 N -0.513 5.513 20 C 0.289 3.711 21 C -0.412 4.412 22 H 0.091 0.909 23 C 0.068 3.932 24 N -0.713 5.713 25 Si 0.907 3.093 26 H -0.259 1.259 27 H -0.274 1.274 28 H -0.274 1.274 29 H 0.036 0.964 30 H 0.036 0.964 31 H 0.080 0.920 32 H 0.099 0.901 33 H 0.091 0.909 34 H 0.395 0.605 35 H 0.071 0.929 36 H 0.080 0.920 37 H 0.094 0.906 38 H 0.052 0.948 39 H 0.086 0.914 40 H 0.080 0.920 41 H 0.082 0.918 42 H 0.042 0.958 43 H 0.336 0.664 44 H 0.052 0.948 45 H 0.089 0.911 46 H 0.077 0.923 47 H 0.078 0.922 48 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.580 12.865 -2.303 13.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.226 6.226 3 C -0.125 4.125 4 C -0.138 4.138 5 C -0.375 4.375 6 C 0.157 3.843 7 N -0.368 5.368 8 C 0.061 3.939 9 H 0.093 0.907 10 C -0.211 4.211 11 C -0.016 4.016 12 O -0.282 6.282 13 C 0.083 3.917 14 C -0.151 4.151 15 C -0.094 4.094 16 N -0.290 5.290 17 C -0.123 4.123 18 C -0.185 4.185 19 N -0.236 5.236 20 C 0.161 3.839 21 C -0.444 4.444 22 H 0.109 0.891 23 C -0.157 4.157 24 N -0.335 5.335 25 Si 0.731 3.269 26 H -0.183 1.183 27 H -0.200 1.200 28 H -0.199 1.199 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.098 0.902 32 H 0.117 0.883 33 H 0.109 0.891 34 H 0.230 0.770 35 H 0.090 0.910 36 H 0.099 0.901 37 H 0.112 0.888 38 H 0.070 0.930 39 H 0.105 0.895 40 H 0.099 0.901 41 H 0.101 0.899 42 H 0.060 0.940 43 H 0.151 0.849 44 H 0.071 0.929 45 H 0.107 0.893 46 H 0.096 0.904 47 H 0.096 0.904 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.590 13.440 -1.593 14.002 hybrid contribution -0.358 -1.295 -0.876 1.603 sum -3.948 12.146 -2.468 13.008 Atomic orbital electron populations 1.22680 0.82223 1.01493 0.99613 1.85922 1.17807 1.27917 1.90907 1.20035 0.93439 0.83108 1.15869 1.20668 0.97229 0.92399 1.03554 1.20347 0.92832 0.96189 1.28095 1.18472 0.87693 0.86661 0.91434 1.44103 1.07660 1.01130 1.83893 1.20616 0.94978 0.83550 0.94708 0.90683 1.22765 1.02042 0.97321 0.99015 1.22643 0.92848 0.87886 0.98225 1.87889 1.69362 1.45941 1.25012 1.21680 0.92995 0.93949 0.83044 1.22323 0.97712 0.97619 0.97413 1.22955 0.88827 1.01108 0.96538 1.63724 1.10234 1.23468 1.31524 1.23608 0.99702 0.90461 0.98509 1.22464 0.99860 0.93897 1.02329 1.68385 1.34739 0.94963 1.25502 1.17772 0.85009 0.91054 0.90087 1.19580 0.90532 0.93169 1.41134 0.89073 1.26083 0.98777 0.97145 0.93736 1.70178 1.10108 1.24441 1.28798 0.86273 0.79810 0.82383 0.78399 1.18278 1.19953 1.19932 0.94513 0.94546 0.90195 0.88348 0.89063 0.77001 0.90996 0.90136 0.88813 0.92960 0.89515 0.90106 0.89914 0.93961 0.84926 0.92933 0.89255 0.90437 0.90358 0.91939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.63 9.83 101.05 0.99 1.62 16 2 O -0.31 -7.31 9.61 -18.56 -0.18 -7.49 16 3 C -0.08 -1.95 6.74 -38.11 -0.26 -2.21 16 4 C -0.11 -2.61 9.12 -39.21 -0.36 -2.97 16 5 C -0.35 -7.83 8.90 -38.91 -0.35 -8.17 16 6 C 0.40 9.39 7.63 -155.27 -1.19 8.20 16 7 N -0.73 -14.22 5.25 -53.63 -0.28 -14.51 16 8 C 0.17 2.58 2.00 -67.69 -0.14 2.44 16 9 H 0.08 1.19 5.82 -51.93 -0.30 0.89 16 10 C -0.17 -2.47 5.64 -26.59 -0.15 -2.62 16 11 C 0.06 0.75 6.59 37.21 0.25 0.99 16 12 O -0.36 -4.85 10.17 -35.23 -0.36 -5.20 16 13 C 0.12 1.47 1.04 -89.88 -0.09 1.38 16 14 C -0.11 -1.15 6.44 -25.52 -0.16 -1.31 16 15 C 0.04 0.32 7.48 -2.11 -0.02 0.30 16 16 N -0.66 -6.77 7.63 -109.73 -0.84 -7.61 16 17 C 0.01 0.07 5.66 -2.34 -0.01 0.06 16 18 C -0.15 -1.88 4.04 -26.80 -0.11 -1.99 16 19 N -0.51 -13.95 7.88 -10.20 -0.08 -14.03 16 20 C 0.29 8.05 6.56 -84.85 -0.56 7.50 16 21 C -0.41 -11.29 8.94 -37.90 -0.34 -11.63 16 22 H 0.09 2.44 7.31 -52.49 -0.38 2.06 16 23 C 0.07 1.73 5.50 -17.33 -0.10 1.63 16 24 N -0.71 -18.72 11.45 55.55 0.64 -18.09 16 25 Si 0.91 18.85 29.56 -169.99 -5.02 13.82 16 26 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 27 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 28 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 29 H 0.04 0.60 7.69 -51.93 -0.40 0.20 16 30 H 0.04 0.59 7.69 -51.93 -0.40 0.19 16 31 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 32 H 0.10 1.96 6.43 -52.49 -0.34 1.62 16 33 H 0.09 1.82 6.03 -52.49 -0.32 1.50 16 34 H 0.40 7.76 8.73 -40.82 -0.36 7.41 16 35 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.08 1.27 7.70 -51.93 -0.40 0.87 16 37 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.05 0.61 6.16 -51.93 -0.32 0.29 16 39 H 0.09 0.91 7.97 -51.93 -0.41 0.50 16 40 H 0.08 0.73 7.69 -51.93 -0.40 0.33 16 41 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 42 H 0.04 0.35 8.14 -51.93 -0.42 -0.08 16 43 H 0.34 2.82 8.92 -39.29 -0.35 2.47 16 44 H 0.05 0.59 7.77 -51.93 -0.40 0.18 16 45 H 0.09 1.04 5.93 -51.93 -0.31 0.73 16 46 H 0.08 0.97 8.05 -51.93 -0.42 0.56 16 47 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 48 H 0.27 6.40 8.29 -40.82 -0.34 6.07 16 LS Contribution 372.01 15.07 5.61 5.61 Total: -1.00 -30.72 372.01 -10.28 -41.00 By element: Atomic # 1 Polarization: 20.43 SS G_CDS: -7.18 Total: 13.25 kcal Atomic # 6 Polarization: -4.18 SS G_CDS: -2.58 Total: -6.76 kcal Atomic # 7 Polarization: -53.67 SS G_CDS: -0.56 Total: -54.23 kcal Atomic # 8 Polarization: -12.15 SS G_CDS: -0.54 Total: -12.69 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -5.02 Total: 13.82 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -30.72 -10.28 -41.00 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163315381.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.535 kcal (2) G-P(sol) polarization free energy of solvation -30.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds