Wall clock time and date at job start Tue Mar 31 2020 17:39:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35620 * 116.99959 * 2 1 4 4 C 1.39157 * 120.49893 * 0.02562 * 3 2 1 5 5 C 1.38314 * 118.62515 * 180.02562 * 4 3 2 6 6 C 1.39948 * 119.59227 * 359.97438 * 5 4 3 7 7 N 1.38898 * 119.49256 * 179.97438 * 6 5 4 8 8 C 1.46501 * 120.00243 * 0.02562 * 7 6 5 9 9 H 1.09005 * 109.63354 * 325.25146 * 8 7 6 10 10 C 1.53180 * 109.55855 * 85.48624 * 8 7 6 11 11 C 1.53093 * 109.24571 * 177.24686 * 10 8 7 12 12 O 1.42996 * 109.39451 * 301.98583 * 11 10 8 13 13 C 1.42335 * 114.19449 * 60.18862 * 12 11 10 14 14 C 1.53843 * 110.23852 * 178.22710 * 13 12 11 15 15 C 1.54479 * 104.91377 * 241.01483 * 14 13 12 16 16 N 1.48592 * 104.60945 * 23.78065 * 15 14 13 17 17 C 1.48662 * 104.28000 * 320.76840 * 16 15 14 18 18 C 1.52595 * 110.73058 * 300.31893 * 13 12 11 19 19 N 1.31861 * 121.01048 * 0.25708 * 6 5 4 20 20 C 1.33830 * 121.47173 * 359.48586 * 19 6 5 21 21 C 1.40917 * 119.84819 * 180.26526 * 20 19 6 22 22 H 1.08002 * 119.99765 * 180.24491 * 21 20 19 23 23 C 1.40020 * 120.00229 * 0.24054 * 21 20 19 24 24 N 1.30786 * 120.00040 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00271 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.46947 * 0.02562 * 25 23 21 27 27 H 1.48492 * 109.47242 * 120.00255 * 25 23 21 28 28 H 1.48501 * 109.47205 * 240.00588 * 25 23 21 29 29 H 1.08996 * 109.47018 * 299.99739 * 1 2 3 30 30 H 1.09002 * 109.47230 * 60.00210 * 1 2 3 31 31 H 1.09000 * 109.47179 * 179.97438 * 1 2 3 32 32 H 1.07990 * 120.69066 * 359.97438 * 4 3 2 33 33 H 1.07991 * 120.20196 * 180.02562 * 5 4 3 34 34 H 0.97007 * 120.00444 * 180.02562 * 7 6 5 35 35 H 1.09004 * 109.49240 * 57.32978 * 10 8 7 36 36 H 1.09002 * 109.52400 * 297.18684 * 10 8 7 37 37 H 1.09002 * 109.48741 * 182.00091 * 11 10 8 38 38 H 1.09002 * 109.48265 * 61.96396 * 11 10 8 39 39 H 1.08998 * 110.35274 * 359.88323 * 14 13 12 40 40 H 1.09005 * 110.35096 * 122.16248 * 14 13 12 41 41 H 1.08999 * 110.40589 * 142.55879 * 15 14 13 42 42 H 1.08998 * 110.41401 * 264.88014 * 15 14 13 43 43 H 1.00903 * 110.99888 * 201.18105 * 16 15 14 44 44 H 1.08998 * 110.42728 * 280.35618 * 17 16 15 45 45 H 1.09006 * 110.42330 * 157.87008 * 17 16 15 46 46 H 1.08996 * 109.51539 * 176.17358 * 18 13 12 47 47 H 1.08998 * 109.51481 * 296.28968 * 18 13 12 48 48 H 0.96995 * 119.99786 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2084 0.0000 4 6 1.2970 2.3820 0.0005 5 6 1.9649 3.5932 0.0000 6 6 3.3642 3.6108 -0.0006 7 7 4.0328 4.8282 -0.0017 8 6 3.2734 6.0810 -0.0017 9 1 2.3617 5.9567 -0.5861 10 6 2.9115 6.4614 1.4373 11 6 2.1784 7.8054 1.4349 12 8 3.0102 8.7989 0.8301 13 6 3.3672 8.5183 -0.5189 14 6 4.2219 9.6619 -1.0921 15 6 3.4053 10.2099 -2.2834 16 7 2.0008 9.8303 -1.9813 17 6 2.1065 8.4656 -1.4012 18 6 4.1264 7.1980 -0.6133 19 7 4.0577 2.4892 -0.0056 20 6 3.4544 1.2947 -0.0002 21 6 4.2291 0.1176 -0.0002 22 1 3.7447 -0.8477 0.0002 23 6 5.6269 0.1995 -0.0008 24 7 6.2135 1.3684 -0.0009 25 14 6.6540 -1.3608 -0.0016 26 1 5.7567 -2.5440 -0.0020 27 1 7.5103 -1.3891 -1.2144 28 1 7.5114 -1.3897 1.2106 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 0.2176 2.3479 0.0005 33 1 1.4099 4.5196 0.0008 34 1 5.0027 4.8491 -0.0024 35 1 3.8216 6.5443 2.0315 36 1 2.2652 5.6950 1.8651 37 1 1.9504 8.0970 2.4602 38 1 1.2518 7.7130 0.8685 39 1 4.3669 10.4395 -0.3421 40 1 5.1838 9.2810 -1.4353 41 1 3.5014 11.2940 -2.3434 42 1 3.7339 9.7479 -3.2143 43 1 1.4395 9.8242 -2.8198 44 1 2.2259 7.7245 -2.1915 45 1 1.2280 8.2402 -0.7965 46 1 4.3302 6.9692 -1.6593 47 1 5.0668 7.2789 -0.0683 48 1 7.1818 1.4251 -0.0009 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163315381.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:39:10 Heat of formation + Delta-G solvation = -52.342635 kcal Electronic energy + Delta-G solvation = -29514.925776 eV Core-core repulsion = 25569.346868 eV Total energy + Delta-G solvation = -3945.578908 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.58798 -40.56392 -38.74813 -37.70653 -36.61182 -35.23075 -32.74748 -32.42718 -32.10978 -30.16163 -30.06129 -28.01908 -27.43850 -26.52453 -24.92906 -23.66507 -23.14719 -22.40966 -21.49548 -20.23200 -19.30567 -18.45167 -18.16434 -17.90536 -17.22832 -16.89771 -16.67223 -16.32625 -16.22312 -15.83659 -15.60510 -15.44691 -14.98661 -14.74157 -14.49415 -14.16627 -14.15358 -14.03951 -13.87674 -13.31746 -13.22331 -13.03764 -12.91134 -12.89563 -12.62858 -12.53380 -12.48283 -12.29428 -12.22824 -12.12518 -12.00252 -11.72880 -11.56100 -11.29044 -11.15048 -10.49405 -10.11981 -9.90961 -9.57914 -9.56778 -8.26057 -8.07915 -6.32345 0.98615 1.27896 1.41663 1.55626 1.56920 2.26125 2.51558 2.76241 2.90858 3.03749 3.25923 3.49975 3.66226 3.79139 3.91665 4.00725 4.04159 4.10321 4.19698 4.27577 4.29135 4.35029 4.43605 4.45337 4.51592 4.58915 4.63238 4.68068 4.75203 4.76595 4.80058 4.87607 4.90522 4.92458 4.96364 5.05360 5.10915 5.15572 5.26968 5.33255 5.51415 5.64266 5.73179 5.87400 6.26903 6.31618 6.37434 6.42050 6.73743 6.84589 6.99882 7.34221 8.29967 8.48869 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014539 B = 0.003142 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1925.420516 B = 8910.446542 C =10072.309351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.338 6.338 3 C -0.100 4.100 4 C -0.112 4.112 5 C -0.341 4.341 6 C 0.378 3.622 7 N -0.727 5.727 8 C 0.168 3.832 9 H 0.073 0.927 10 C -0.164 4.164 11 C 0.066 3.934 12 O -0.374 6.374 13 C 0.122 3.878 14 C -0.114 4.114 15 C 0.037 3.963 16 N -0.669 5.669 17 C 0.008 3.992 18 C -0.137 4.137 19 N -0.543 5.543 20 C 0.253 3.747 21 C -0.451 4.451 22 H 0.082 0.918 23 C 0.026 3.974 24 N -0.748 5.748 25 Si 0.984 3.016 26 H -0.259 1.259 27 H -0.265 1.265 28 H -0.265 1.265 29 H 0.047 0.953 30 H 0.047 0.953 31 H 0.110 0.890 32 H 0.131 0.869 33 H 0.119 0.881 34 H 0.392 0.608 35 H 0.062 0.938 36 H 0.065 0.935 37 H 0.110 0.890 38 H 0.063 0.937 39 H 0.083 0.917 40 H 0.091 0.909 41 H 0.095 0.905 42 H 0.053 0.947 43 H 0.346 0.654 44 H 0.052 0.948 45 H 0.085 0.915 46 H 0.080 0.920 47 H 0.076 0.924 48 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.384 14.008 -2.746 15.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.253 6.253 3 C -0.147 4.147 4 C -0.137 4.137 5 C -0.367 4.367 6 C 0.140 3.860 7 N -0.362 5.362 8 C 0.062 3.938 9 H 0.091 0.909 10 C -0.204 4.204 11 C -0.011 4.011 12 O -0.293 6.293 13 C 0.081 3.919 14 C -0.151 4.151 15 C -0.092 4.092 16 N -0.299 5.299 17 C -0.121 4.121 18 C -0.176 4.176 19 N -0.267 5.267 20 C 0.125 3.875 21 C -0.483 4.483 22 H 0.101 0.899 23 C -0.196 4.196 24 N -0.370 5.370 25 Si 0.805 3.195 26 H -0.183 1.183 27 H -0.190 1.190 28 H -0.190 1.190 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.128 0.872 32 H 0.149 0.851 33 H 0.137 0.863 34 H 0.226 0.774 35 H 0.080 0.920 36 H 0.084 0.916 37 H 0.128 0.872 38 H 0.081 0.919 39 H 0.101 0.899 40 H 0.109 0.891 41 H 0.113 0.887 42 H 0.071 0.929 43 H 0.163 0.837 44 H 0.070 0.930 45 H 0.103 0.897 46 H 0.099 0.901 47 H 0.095 0.905 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.425 14.637 -2.042 15.427 hybrid contribution -0.254 -1.525 -0.738 1.713 sum -4.679 13.112 -2.780 14.196 Atomic orbital electron populations 1.23017 0.79144 1.03966 1.00546 1.85856 1.21019 1.27337 1.91040 1.20085 0.93231 0.84576 1.16843 1.21039 0.98848 0.91664 1.02120 1.20686 0.92587 0.97298 1.26176 1.18869 0.88684 0.87204 0.91254 1.44279 1.07691 1.01201 1.83022 1.20823 0.94922 0.82490 0.95577 0.90882 1.22661 1.01567 0.98298 0.97862 1.22666 0.92645 0.86374 0.99406 1.87890 1.69563 1.46112 1.25760 1.21784 0.93563 0.93801 0.82753 1.22372 0.98161 0.96865 0.97735 1.23005 0.87918 1.01921 0.96389 1.63712 1.11157 1.22615 1.32425 1.23535 0.99036 0.91176 0.98368 1.22393 0.99464 0.93557 1.02187 1.68323 1.36134 0.95764 1.26458 1.18197 0.86743 0.91630 0.90962 1.19753 0.91920 0.92969 1.43671 0.89939 1.26907 0.99246 1.00639 0.92793 1.70250 1.10732 1.26498 1.29552 0.85134 0.77805 0.77779 0.78824 1.18291 1.18955 1.19014 0.93448 0.93445 0.87151 0.85126 0.86338 0.77432 0.91967 0.91590 0.87223 0.91932 0.89874 0.89055 0.88706 0.92857 0.83750 0.92981 0.89683 0.90091 0.90522 0.91275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.94 9.83 113.37 1.11 2.06 16 2 O -0.34 -15.99 9.61 -89.32 -0.86 -16.84 16 3 C -0.10 -5.15 6.74 23.23 0.16 -5.00 16 4 C -0.11 -5.06 9.12 22.51 0.21 -4.85 16 5 C -0.34 -15.11 8.90 22.70 0.20 -14.91 16 6 C 0.38 18.24 7.63 133.46 1.02 19.26 16 7 N -0.73 -28.51 5.25 -323.59 -1.70 -30.21 16 8 C 0.17 4.99 2.00 45.14 0.09 5.08 16 9 H 0.07 2.22 5.82 -2.38 -0.01 2.21 16 10 C -0.16 -4.59 5.64 30.69 0.17 -4.41 16 11 C 0.07 1.50 6.59 72.01 0.47 1.98 16 12 O -0.37 -9.32 10.17 -148.98 -1.52 -10.83 16 13 C 0.12 2.68 1.04 -10.32 -0.01 2.67 16 14 C -0.11 -2.07 6.44 31.38 0.20 -1.87 16 15 C 0.04 0.57 7.48 86.48 0.65 1.22 16 16 N -0.67 -12.16 7.63 -501.09 -3.82 -15.98 16 17 C 0.01 0.17 5.66 86.29 0.49 0.66 16 18 C -0.14 -3.36 4.04 30.55 0.12 -3.24 16 19 N -0.54 -30.55 7.88 -186.18 -1.47 -32.01 16 20 C 0.25 14.65 6.56 40.23 0.26 14.91 16 21 C -0.45 -25.79 8.94 23.36 0.21 -25.58 16 22 H 0.08 4.65 7.31 -2.91 -0.02 4.63 16 23 C 0.03 1.36 5.50 85.28 0.47 1.82 16 24 N -0.75 -40.53 11.45 21.84 0.25 -40.28 16 25 Si 0.98 39.59 29.56 68.60 2.03 41.62 16 26 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 27 H -0.26 -10.14 7.11 99.48 0.71 -9.44 16 28 H -0.27 -10.20 7.11 99.48 0.71 -9.49 16 29 H 0.05 1.45 7.69 -2.39 -0.02 1.43 16 30 H 0.05 1.44 7.69 -2.39 -0.02 1.43 16 31 H 0.11 2.90 8.14 -2.39 -0.02 2.88 16 32 H 0.13 4.90 6.43 -2.92 -0.02 4.88 16 33 H 0.12 4.50 6.03 -2.92 -0.02 4.48 16 34 H 0.39 15.75 8.73 -92.70 -0.81 14.94 16 35 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.07 2.03 7.70 -2.39 -0.02 2.01 16 37 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 38 H 0.06 1.31 6.16 -2.39 -0.01 1.30 16 39 H 0.08 1.59 7.97 -2.39 -0.02 1.57 16 40 H 0.09 1.45 7.69 -2.38 -0.02 1.44 16 41 H 0.09 1.26 8.14 -2.39 -0.02 1.25 16 42 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 43 H 0.35 5.01 8.92 -89.69 -0.80 4.21 16 44 H 0.05 1.06 7.77 -2.39 -0.02 1.05 16 45 H 0.09 1.81 5.93 -2.38 -0.01 1.79 16 46 H 0.08 1.93 8.05 -2.39 -0.02 1.91 16 47 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 48 H 0.28 13.49 8.29 -92.71 -0.77 12.72 16 Total: -1.00 -68.69 372.01 -1.86 -70.55 By element: Atomic # 1 Polarization: 44.80 SS G_CDS: -0.60 Total: 44.20 kcal Atomic # 6 Polarization: -16.04 SS G_CDS: 5.83 Total: -10.21 kcal Atomic # 7 Polarization: -111.75 SS G_CDS: -6.74 Total: -118.48 kcal Atomic # 8 Polarization: -25.30 SS G_CDS: -2.37 Total: -27.68 kcal Atomic # 14 Polarization: 39.59 SS G_CDS: 2.03 Total: 41.62 kcal Total: -68.69 -1.86 -70.55 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163315381.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.210 kcal (2) G-P(sol) polarization free energy of solvation -68.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds