Wall clock time and date at job start Tue Mar 31 2020 17:39:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35616 * 117.00040 * 2 1 4 4 C 1.39152 * 120.50463 * 359.97438 * 3 2 1 5 5 C 1.38307 * 118.62719 * 179.76932 * 4 3 2 6 6 C 1.39935 * 119.59734 * 0.47845 * 5 4 3 7 7 N 1.38906 * 119.49966 * 179.79239 * 6 5 4 8 8 C 1.46496 * 119.99733 * 359.71880 * 7 6 5 9 9 H 1.09000 * 109.63853 * 35.25598 * 8 7 6 10 10 C 1.53178 * 109.55534 * 275.00528 * 8 7 6 11 11 C 1.53095 * 109.24948 * 182.75096 * 10 8 7 12 12 O 1.42995 * 109.38071 * 58.03240 * 11 10 8 13 13 C 1.42355 * 114.18454 * 299.78564 * 12 11 10 14 14 C 1.54387 * 109.83481 * 298.08408 * 13 12 11 15 15 C 1.55027 * 102.73643 * 262.51673 * 14 13 12 16 16 N 1.48575 * 103.41847 * 323.11256 * 15 14 13 17 17 C 1.48007 * 105.83776 * 38.88542 * 16 15 14 18 18 C 1.52594 * 110.70957 * 59.70861 * 13 12 11 19 19 N 1.31865 * 121.00779 * 359.50509 * 6 5 4 20 20 C 1.33826 * 121.47177 * 0.26100 * 19 6 5 21 21 C 1.40917 * 119.85182 * 179.97438 * 20 19 6 22 22 H 1.07989 * 120.00160 * 180.02562 * 21 20 19 23 23 C 1.40030 * 119.99752 * 0.02562 * 21 20 19 24 24 N 1.30784 * 119.99849 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 120.00005 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.46713 * 60.00287 * 25 23 21 27 27 H 1.48504 * 109.47210 * 179.97438 * 25 23 21 28 28 H 1.48494 * 109.47014 * 300.00215 * 25 23 21 29 29 H 1.09002 * 109.46686 * 299.99929 * 1 2 3 30 30 H 1.09000 * 109.47160 * 60.00007 * 1 2 3 31 31 H 1.08998 * 109.47427 * 180.02562 * 1 2 3 32 32 H 1.07999 * 120.68544 * 0.02562 * 4 3 2 33 33 H 1.08006 * 120.20466 * 180.24613 * 5 4 3 34 34 H 0.97003 * 120.00140 * 179.72874 * 7 6 5 35 35 H 1.08993 * 109.51252 * 62.81801 * 10 8 7 36 36 H 1.09003 * 109.50744 * 302.67750 * 10 8 7 37 37 H 1.09002 * 109.48255 * 298.06630 * 11 10 8 38 38 H 1.08998 * 109.50576 * 178.02204 * 11 10 8 39 39 H 1.08997 * 110.67259 * 144.26514 * 14 13 12 40 40 H 1.09003 * 110.89556 * 20.86800 * 14 13 12 41 41 H 1.09002 * 110.65968 * 204.58322 * 15 14 13 42 42 H 1.08994 * 110.65695 * 81.64380 * 15 14 13 43 43 H 1.00907 * 110.99607 * 159.40926 * 16 15 14 44 44 H 1.08997 * 109.97494 * 94.13109 * 17 16 15 45 45 H 1.08999 * 109.97765 * 215.36665 * 17 16 15 46 46 H 1.09006 * 109.51292 * 63.63948 * 18 13 12 47 47 H 1.09000 * 109.51433 * 183.79475 * 18 13 12 48 48 H 0.96999 * 119.99553 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2083 0.0000 4 6 1.2971 2.3820 -0.0005 5 6 1.9651 3.5931 0.0044 6 6 3.3643 3.6107 -0.0004 7 7 4.0330 4.8282 0.0001 8 6 3.2736 6.0809 -0.0005 9 1 2.3664 5.9596 0.5913 10 6 2.9014 6.4541 -1.4387 11 6 2.1682 7.7981 -1.4378 12 8 3.0047 8.7945 -0.8443 13 6 3.3713 8.5208 0.5037 14 6 2.1079 8.4667 1.3895 15 6 2.0632 9.8875 2.0082 16 7 3.4955 10.2086 2.2381 17 6 4.2237 9.6665 1.0691 18 6 4.1311 7.2009 0.5990 19 7 4.0578 2.4891 0.0002 20 6 3.4544 1.2946 0.0002 21 6 4.2291 0.1175 0.0003 22 1 3.7447 -0.8477 -0.0001 23 6 5.6270 0.1993 0.0009 24 7 6.2136 1.3683 0.0009 25 14 6.6540 -1.3610 0.0018 26 1 6.3419 -2.1596 -1.2108 27 1 8.0957 -1.0048 0.0017 28 1 6.3408 -2.1590 1.2143 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 0.2177 2.3479 -0.0005 33 1 1.4101 4.5197 0.0081 34 1 5.0029 4.8489 0.0008 35 1 2.2519 5.6856 -1.8578 36 1 3.8070 6.5340 -2.0401 37 1 1.2459 7.7087 -0.8638 38 1 1.9323 8.0847 -2.4626 39 1 2.2151 7.7103 2.1669 40 1 1.2187 8.2798 0.7874 41 1 1.5149 9.8796 2.9502 42 1 1.6172 10.5966 1.3110 43 1 3.6340 11.2048 2.3202 44 1 4.3494 10.4439 0.3155 45 1 5.1977 9.2884 1.3796 46 1 5.0670 7.2789 0.0456 47 1 4.3430 6.9774 1.6445 48 1 7.1819 1.4249 0.0010 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163315383.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:39:18 Heat of formation + Delta-G solvation = -30.701224 kcal Electronic energy + Delta-G solvation = -29504.345406 eV Core-core repulsion = 25559.704940 eV Total energy + Delta-G solvation = -3944.640466 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.58828 -38.79691 -37.26374 -36.57419 -35.15088 -33.43285 -31.39121 -31.09591 -30.25057 -29.62916 -28.40051 -26.50667 -26.08287 -24.89444 -23.84600 -22.22199 -21.56050 -21.28380 -20.11279 -19.13527 -17.46767 -17.30982 -16.64357 -16.48651 -16.00088 -15.49393 -15.09231 -14.95064 -14.69913 -14.60964 -14.46158 -14.26259 -13.73036 -13.42555 -13.26553 -12.79717 -12.70589 -12.53068 -12.37450 -12.31121 -12.15554 -11.71261 -11.62695 -11.54416 -11.25476 -11.20179 -11.07730 -11.01081 -10.87251 -10.60058 -10.43429 -10.35864 -10.12460 -9.81443 -9.51898 -9.42235 -8.80468 -8.43720 -8.00035 -7.65118 -6.36268 -6.27169 -4.34409 2.85067 3.12541 3.14543 3.16258 3.29665 3.54914 3.99998 4.02963 4.06657 4.47102 4.54419 4.62492 4.77252 4.85105 4.95375 5.04688 5.10871 5.18309 5.27041 5.35496 5.39336 5.55262 5.61772 5.69904 5.76869 5.78731 5.81304 5.81484 5.90288 5.96303 5.99052 6.01789 6.10466 6.12786 6.21170 6.35283 6.42265 6.48978 6.74096 6.82058 7.03234 7.21959 7.22498 7.31901 7.51088 7.71126 8.22121 8.30075 8.46077 8.70880 8.81432 9.19512 10.19893 10.36969 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014580 B = 0.003134 C = 0.002769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1920.028210 B = 8932.966852 C =10108.837279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.312 6.312 3 C -0.077 4.077 4 C -0.114 4.114 5 C -0.348 4.348 6 C 0.396 3.604 7 N -0.732 5.732 8 C 0.170 3.830 9 H 0.076 0.924 10 C -0.172 4.172 11 C 0.062 3.938 12 O -0.375 6.375 13 C 0.115 3.885 14 C -0.153 4.153 15 C 0.040 3.960 16 N -0.670 5.670 17 C 0.053 3.947 18 C -0.142 4.142 19 N -0.513 5.513 20 C 0.290 3.710 21 C -0.413 4.413 22 H 0.090 0.910 23 C 0.068 3.932 24 N -0.713 5.713 25 Si 0.908 3.092 26 H -0.265 1.265 27 H -0.279 1.279 28 H -0.265 1.265 29 H 0.036 0.964 30 H 0.036 0.964 31 H 0.079 0.921 32 H 0.098 0.902 33 H 0.091 0.909 34 H 0.395 0.605 35 H 0.080 0.920 36 H 0.071 0.929 37 H 0.053 0.947 38 H 0.093 0.907 39 H 0.086 0.914 40 H 0.081 0.919 41 H 0.082 0.918 42 H 0.043 0.957 43 H 0.338 0.662 44 H 0.055 0.945 45 H 0.091 0.909 46 H 0.075 0.925 47 H 0.083 0.917 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.660 14.018 0.638 15.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.226 6.226 3 C -0.125 4.125 4 C -0.138 4.138 5 C -0.375 4.375 6 C 0.158 3.842 7 N -0.367 5.367 8 C 0.062 3.938 9 H 0.094 0.906 10 C -0.211 4.211 11 C -0.015 4.015 12 O -0.294 6.294 13 C 0.074 3.926 14 C -0.191 4.191 15 C -0.089 4.089 16 N -0.299 5.299 17 C -0.076 4.076 18 C -0.181 4.181 19 N -0.236 5.236 20 C 0.161 3.839 21 C -0.445 4.445 22 H 0.108 0.892 23 C -0.157 4.157 24 N -0.335 5.335 25 Si 0.733 3.267 26 H -0.190 1.190 27 H -0.204 1.204 28 H -0.189 1.189 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.098 0.902 32 H 0.116 0.884 33 H 0.109 0.891 34 H 0.230 0.770 35 H 0.099 0.901 36 H 0.090 0.910 37 H 0.071 0.929 38 H 0.111 0.889 39 H 0.105 0.895 40 H 0.099 0.901 41 H 0.100 0.900 42 H 0.061 0.939 43 H 0.154 0.846 44 H 0.074 0.926 45 H 0.109 0.891 46 H 0.093 0.907 47 H 0.101 0.899 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.417 13.666 1.021 14.398 hybrid contribution -0.827 -0.041 -0.715 1.094 sum -5.244 13.625 0.306 14.602 Atomic orbital electron populations 1.22678 0.82246 1.01474 0.99602 1.85918 1.17789 1.27937 1.90919 1.20032 0.93440 0.83098 1.15943 1.20661 0.97203 0.92407 1.03567 1.20337 0.92840 0.96168 1.28135 1.18470 0.87688 0.86664 0.91380 1.44097 1.07675 1.01123 1.83848 1.20601 0.95050 0.83601 0.94526 0.90600 1.22754 1.01971 0.97143 0.99258 1.22641 0.92712 0.87936 0.98160 1.87835 1.69285 1.46352 1.25901 1.21863 0.93790 0.94379 0.82519 1.23208 0.98429 0.97681 0.99801 1.23013 0.89839 0.96041 0.99995 1.63161 1.07544 1.19240 1.39972 1.22578 0.97562 0.96097 0.91341 1.22376 0.99451 0.93505 1.02730 1.68385 1.34728 0.94957 1.25527 1.17755 0.84987 0.91044 0.90069 1.19505 0.90547 0.93126 1.41309 0.89175 1.26078 0.98747 0.97139 0.93760 1.70159 1.10258 1.24485 1.28601 0.86378 0.78301 0.82118 0.79949 1.18960 1.20379 1.18933 0.94538 0.94545 0.90209 0.88378 0.89086 0.76984 0.90135 0.91017 0.92918 0.88875 0.89539 0.90075 0.89989 0.93882 0.84621 0.92621 0.89083 0.90672 0.89880 0.91813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.64 9.83 101.05 0.99 1.63 16 2 O -0.31 -7.34 9.61 -18.55 -0.18 -7.52 16 3 C -0.08 -1.98 6.74 -38.10 -0.26 -2.24 16 4 C -0.11 -2.62 9.12 -39.22 -0.36 -2.98 16 5 C -0.35 -7.87 8.87 -38.92 -0.35 -8.22 16 6 C 0.40 9.47 7.63 -155.27 -1.18 8.29 16 7 N -0.73 -14.37 5.25 -53.64 -0.28 -14.65 16 8 C 0.17 2.61 2.00 -67.70 -0.14 2.48 16 9 H 0.08 1.22 5.78 -51.93 -0.30 0.92 16 10 C -0.17 -2.45 5.63 -26.59 -0.15 -2.60 16 11 C 0.06 0.73 6.58 37.21 0.24 0.98 16 12 O -0.37 -4.72 10.16 -35.23 -0.36 -5.08 16 13 C 0.12 1.35 0.98 -89.80 -0.09 1.26 16 14 C -0.15 -1.67 5.21 -24.93 -0.13 -1.80 16 15 C 0.04 0.38 7.55 -1.83 -0.01 0.37 16 16 N -0.67 -6.53 7.52 -110.15 -0.83 -7.36 16 17 C 0.05 0.56 7.00 -2.91 -0.02 0.54 16 18 C -0.14 -1.87 4.02 -26.80 -0.11 -1.97 16 19 N -0.51 -14.03 7.88 -10.20 -0.08 -14.12 16 20 C 0.29 8.11 6.56 -84.85 -0.56 7.56 16 21 C -0.41 -11.37 8.94 -37.90 -0.34 -11.70 16 22 H 0.09 2.41 7.31 -52.49 -0.38 2.03 16 23 C 0.07 1.75 5.50 -17.33 -0.10 1.65 16 24 N -0.71 -18.83 11.45 55.55 0.64 -18.19 16 25 Si 0.91 18.97 29.56 -169.99 -5.02 13.95 16 26 H -0.26 -5.48 7.11 56.52 0.40 -5.08 16 27 H -0.28 -5.64 7.11 56.52 0.40 -5.23 16 28 H -0.26 -5.48 7.11 56.52 0.40 -5.08 16 29 H 0.04 0.59 7.69 -51.93 -0.40 0.19 16 30 H 0.04 0.59 7.69 -51.93 -0.40 0.19 16 31 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 32 H 0.10 1.96 6.43 -52.49 -0.34 1.63 16 33 H 0.09 1.82 6.02 -52.48 -0.32 1.51 16 34 H 0.40 7.86 8.72 -40.82 -0.36 7.51 16 35 H 0.08 1.26 7.65 -51.93 -0.40 0.87 16 36 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.05 0.58 6.15 -51.93 -0.32 0.26 16 38 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 39 H 0.09 1.01 7.74 -51.93 -0.40 0.61 16 40 H 0.08 0.85 5.96 -51.93 -0.31 0.54 16 41 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.04 0.39 8.14 -51.93 -0.42 -0.04 16 43 H 0.34 2.61 8.92 -39.29 -0.35 2.26 16 44 H 0.06 0.56 7.96 -51.93 -0.41 0.15 16 45 H 0.09 0.93 7.68 -51.93 -0.40 0.54 16 46 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 47 H 0.08 1.12 8.07 -51.93 -0.42 0.70 16 48 H 0.27 6.51 8.29 -40.82 -0.34 6.17 16 LS Contribution 371.81 15.07 5.60 5.60 Total: -1.00 -30.51 371.81 -10.23 -40.74 By element: Atomic # 1 Polarization: 20.56 SS G_CDS: -7.17 Total: 13.39 kcal Atomic # 6 Polarization: -4.23 SS G_CDS: -2.54 Total: -6.77 kcal Atomic # 7 Polarization: -53.76 SS G_CDS: -0.55 Total: -54.32 kcal Atomic # 8 Polarization: -12.06 SS G_CDS: -0.54 Total: -12.59 kcal Atomic # 14 Polarization: 18.97 SS G_CDS: -5.02 Total: 13.95 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -30.51 -10.23 -40.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163315383.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.037 kcal (2) G-P(sol) polarization free energy of solvation -30.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds