Wall clock time and date at job start Tue Mar 31 2020 17:39:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35616 * 117.00040 * 2 1 4 4 C 1.39152 * 120.50463 * 359.97438 * 3 2 1 5 5 C 1.38307 * 118.62719 * 179.76932 * 4 3 2 6 6 C 1.39935 * 119.59734 * 0.47845 * 5 4 3 7 7 N 1.38906 * 119.49966 * 179.79239 * 6 5 4 8 8 C 1.46496 * 119.99733 * 359.71880 * 7 6 5 9 9 H 1.09000 * 109.63853 * 35.25598 * 8 7 6 10 10 C 1.53178 * 109.55534 * 275.00528 * 8 7 6 11 11 C 1.53095 * 109.24948 * 182.75096 * 10 8 7 12 12 O 1.42995 * 109.38071 * 58.03240 * 11 10 8 13 13 C 1.42355 * 114.18454 * 299.78564 * 12 11 10 14 14 C 1.54387 * 109.83481 * 298.08408 * 13 12 11 15 15 C 1.55027 * 102.73643 * 262.51673 * 14 13 12 16 16 N 1.48575 * 103.41847 * 323.11256 * 15 14 13 17 17 C 1.48007 * 105.83776 * 38.88542 * 16 15 14 18 18 C 1.52594 * 110.70957 * 59.70861 * 13 12 11 19 19 N 1.31865 * 121.00779 * 359.50509 * 6 5 4 20 20 C 1.33826 * 121.47177 * 0.26100 * 19 6 5 21 21 C 1.40917 * 119.85182 * 179.97438 * 20 19 6 22 22 H 1.07989 * 120.00160 * 180.02562 * 21 20 19 23 23 C 1.40030 * 119.99752 * 0.02562 * 21 20 19 24 24 N 1.30784 * 119.99849 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 120.00005 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.46713 * 60.00287 * 25 23 21 27 27 H 1.48504 * 109.47210 * 179.97438 * 25 23 21 28 28 H 1.48494 * 109.47014 * 300.00215 * 25 23 21 29 29 H 1.09002 * 109.46686 * 299.99929 * 1 2 3 30 30 H 1.09000 * 109.47160 * 60.00007 * 1 2 3 31 31 H 1.08998 * 109.47427 * 180.02562 * 1 2 3 32 32 H 1.07999 * 120.68544 * 0.02562 * 4 3 2 33 33 H 1.08006 * 120.20466 * 180.24613 * 5 4 3 34 34 H 0.97003 * 120.00140 * 179.72874 * 7 6 5 35 35 H 1.08993 * 109.51252 * 62.81801 * 10 8 7 36 36 H 1.09003 * 109.50744 * 302.67750 * 10 8 7 37 37 H 1.09002 * 109.48255 * 298.06630 * 11 10 8 38 38 H 1.08998 * 109.50576 * 178.02204 * 11 10 8 39 39 H 1.08997 * 110.67259 * 144.26514 * 14 13 12 40 40 H 1.09003 * 110.89556 * 20.86800 * 14 13 12 41 41 H 1.09002 * 110.65968 * 204.58322 * 15 14 13 42 42 H 1.08994 * 110.65695 * 81.64380 * 15 14 13 43 43 H 1.00907 * 110.99607 * 159.40926 * 16 15 14 44 44 H 1.08997 * 109.97494 * 94.13109 * 17 16 15 45 45 H 1.08999 * 109.97765 * 215.36665 * 17 16 15 46 46 H 1.09006 * 109.51292 * 63.63948 * 18 13 12 47 47 H 1.09000 * 109.51433 * 183.79475 * 18 13 12 48 48 H 0.96999 * 119.99553 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2083 0.0000 4 6 1.2971 2.3820 -0.0005 5 6 1.9651 3.5931 0.0044 6 6 3.3643 3.6107 -0.0004 7 7 4.0330 4.8282 0.0001 8 6 3.2736 6.0809 -0.0005 9 1 2.3664 5.9596 0.5913 10 6 2.9014 6.4541 -1.4387 11 6 2.1682 7.7981 -1.4378 12 8 3.0047 8.7945 -0.8443 13 6 3.3713 8.5208 0.5037 14 6 2.1079 8.4667 1.3895 15 6 2.0632 9.8875 2.0082 16 7 3.4955 10.2086 2.2381 17 6 4.2237 9.6665 1.0691 18 6 4.1311 7.2009 0.5990 19 7 4.0578 2.4891 0.0002 20 6 3.4544 1.2946 0.0002 21 6 4.2291 0.1175 0.0003 22 1 3.7447 -0.8477 -0.0001 23 6 5.6270 0.1993 0.0009 24 7 6.2136 1.3683 0.0009 25 14 6.6540 -1.3610 0.0018 26 1 6.3419 -2.1596 -1.2108 27 1 8.0957 -1.0048 0.0017 28 1 6.3408 -2.1590 1.2143 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 0.2177 2.3479 -0.0005 33 1 1.4101 4.5197 0.0081 34 1 5.0029 4.8489 0.0008 35 1 2.2519 5.6856 -1.8578 36 1 3.8070 6.5340 -2.0401 37 1 1.2459 7.7087 -0.8638 38 1 1.9323 8.0847 -2.4626 39 1 2.2151 7.7103 2.1669 40 1 1.2187 8.2798 0.7874 41 1 1.5149 9.8796 2.9502 42 1 1.6172 10.5966 1.3110 43 1 3.6340 11.2048 2.3202 44 1 4.3494 10.4439 0.3155 45 1 5.1977 9.2884 1.3796 46 1 5.0670 7.2789 0.0456 47 1 4.3430 6.9774 1.6445 48 1 7.1819 1.4249 0.0010 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163315383.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:39:17 Heat of formation + Delta-G solvation = -52.353535 kcal Electronic energy + Delta-G solvation = -29505.284321 eV Core-core repulsion = 25559.704940 eV Total energy + Delta-G solvation = -3945.579381 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.60876 -40.56155 -38.74927 -37.71535 -36.61332 -35.22912 -32.76659 -32.26946 -32.02427 -30.50925 -30.00696 -28.01121 -27.39793 -26.50913 -24.97781 -23.51894 -22.95287 -22.60125 -21.62875 -20.18609 -19.29358 -18.47760 -18.17082 -18.02124 -17.16913 -16.80552 -16.59385 -16.22646 -16.17917 -15.91225 -15.67867 -15.53197 -14.99704 -14.65660 -14.47825 -14.33548 -14.10475 -14.01207 -13.89007 -13.31926 -13.24728 -13.15828 -12.90445 -12.88854 -12.68458 -12.53959 -12.49500 -12.28556 -12.14293 -12.02022 -11.96867 -11.74885 -11.57349 -11.29662 -11.16879 -10.53463 -10.11351 -9.90376 -9.56130 -9.54103 -8.25087 -8.07199 -6.31816 1.00602 1.28730 1.41668 1.53556 1.58729 2.26449 2.52297 2.65873 2.91793 3.04473 3.28099 3.52703 3.68694 3.77073 3.86122 3.99245 4.03570 4.11269 4.19693 4.29170 4.32272 4.34965 4.45570 4.48828 4.52132 4.60472 4.64263 4.70313 4.74055 4.75997 4.84940 4.87875 4.91484 4.93320 4.99000 5.04538 5.09281 5.11703 5.28458 5.33652 5.52043 5.63850 5.73775 5.88096 6.26450 6.27688 6.39260 6.42870 6.74438 6.85095 7.00359 7.34809 8.30820 8.49514 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014580 B = 0.003134 C = 0.002769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1920.028210 B = 8932.966852 C =10108.837279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.338 6.338 3 C -0.100 4.100 4 C -0.112 4.112 5 C -0.341 4.341 6 C 0.378 3.622 7 N -0.728 5.728 8 C 0.169 3.831 9 H 0.073 0.927 10 C -0.165 4.165 11 C 0.067 3.933 12 O -0.380 6.380 13 C 0.115 3.885 14 C -0.155 4.155 15 C 0.044 3.956 16 N -0.677 5.677 17 C 0.056 3.944 18 C -0.134 4.134 19 N -0.544 5.544 20 C 0.253 3.747 21 C -0.452 4.452 22 H 0.083 0.917 23 C 0.026 3.974 24 N -0.748 5.748 25 Si 0.984 3.016 26 H -0.262 1.262 27 H -0.266 1.266 28 H -0.261 1.261 29 H 0.047 0.953 30 H 0.047 0.953 31 H 0.110 0.890 32 H 0.131 0.869 33 H 0.119 0.881 34 H 0.391 0.609 35 H 0.066 0.934 36 H 0.061 0.939 37 H 0.066 0.934 38 H 0.112 0.888 39 H 0.075 0.925 40 H 0.087 0.913 41 H 0.091 0.909 42 H 0.052 0.948 43 H 0.351 0.649 44 H 0.061 0.939 45 H 0.090 0.910 46 H 0.073 0.927 47 H 0.077 0.923 48 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.860 15.337 0.702 16.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.252 6.252 3 C -0.148 4.148 4 C -0.137 4.137 5 C -0.367 4.367 6 C 0.140 3.860 7 N -0.363 5.363 8 C 0.063 3.937 9 H 0.091 0.909 10 C -0.204 4.204 11 C -0.010 4.010 12 O -0.299 6.299 13 C 0.075 3.925 14 C -0.193 4.193 15 C -0.085 4.085 16 N -0.308 5.308 17 C -0.074 4.074 18 C -0.172 4.172 19 N -0.267 5.267 20 C 0.125 3.875 21 C -0.485 4.485 22 H 0.101 0.899 23 C -0.196 4.196 24 N -0.370 5.370 25 Si 0.805 3.195 26 H -0.186 1.186 27 H -0.190 1.190 28 H -0.186 1.186 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.129 0.871 32 H 0.149 0.851 33 H 0.137 0.863 34 H 0.225 0.775 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.130 0.870 39 H 0.094 0.906 40 H 0.105 0.895 41 H 0.109 0.891 42 H 0.070 0.930 43 H 0.168 0.832 44 H 0.079 0.921 45 H 0.108 0.892 46 H 0.091 0.909 47 H 0.096 0.904 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.646 15.043 1.086 16.105 hybrid contribution -0.599 -0.340 -0.729 1.003 sum -6.245 14.704 0.358 15.979 Atomic orbital electron populations 1.23018 0.79143 1.03971 1.00543 1.85853 1.21023 1.27326 1.91045 1.20081 0.93220 0.84593 1.16881 1.21037 0.98852 0.91646 1.02116 1.20681 0.92552 0.97321 1.26181 1.18874 0.88715 0.87185 0.91244 1.44291 1.07688 1.01270 1.83009 1.20807 0.94878 0.82426 0.95584 0.90863 1.22657 1.01554 0.98443 0.97792 1.22689 0.92528 0.86163 0.99587 1.87844 1.69468 1.46334 1.26238 1.21896 0.94285 0.93776 0.82565 1.23203 0.98102 0.98496 0.99464 1.23019 0.89780 0.95120 1.00602 1.63149 1.07715 1.20367 1.39523 1.22532 0.97361 0.95764 0.91712 1.22303 0.99232 0.93636 1.02055 1.68321 1.36159 0.95780 1.26490 1.18187 0.86755 0.91610 0.90955 1.19708 0.91944 0.92997 1.43821 0.89884 1.26914 0.99237 1.00654 0.92793 1.70241 1.10790 1.26578 1.29414 0.85243 0.76810 0.77581 0.79902 1.18599 1.19010 1.18565 0.93459 0.93438 0.87137 0.85083 0.86296 0.77503 0.91557 0.92044 0.91554 0.86968 0.90621 0.89472 0.89054 0.92961 0.83212 0.92057 0.89207 0.90880 0.90421 0.91262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.95 9.83 113.37 1.11 2.06 16 2 O -0.34 -16.04 9.61 -89.27 -0.86 -16.89 16 3 C -0.10 -5.20 6.74 23.23 0.16 -5.05 16 4 C -0.11 -5.08 9.12 22.51 0.21 -4.87 16 5 C -0.34 -15.22 8.87 22.70 0.20 -15.01 16 6 C 0.38 18.44 7.63 133.45 1.02 19.46 16 7 N -0.73 -29.08 5.25 -323.63 -1.70 -30.78 16 8 C 0.17 5.10 2.00 45.14 0.09 5.19 16 9 H 0.07 2.27 5.78 -2.39 -0.01 2.25 16 10 C -0.16 -4.54 5.63 30.69 0.17 -4.37 16 11 C 0.07 1.42 6.58 72.01 0.47 1.89 16 12 O -0.38 -8.71 10.16 -148.98 -1.51 -10.22 16 13 C 0.12 2.50 0.98 -10.26 -0.01 2.49 16 14 C -0.15 -3.06 5.21 31.76 0.17 -2.89 16 15 C 0.04 0.72 7.55 86.67 0.65 1.37 16 16 N -0.68 -11.71 7.52 -502.42 -3.78 -15.49 16 17 C 0.06 1.06 7.00 86.29 0.60 1.66 16 18 C -0.13 -3.43 4.02 30.55 0.12 -3.30 16 19 N -0.54 -30.88 7.88 -186.18 -1.47 -32.35 16 20 C 0.25 14.77 6.56 40.23 0.26 15.03 16 21 C -0.45 -26.04 8.94 23.36 0.21 -25.83 16 22 H 0.08 4.68 7.31 -2.92 -0.02 4.66 16 23 C 0.03 1.37 5.50 85.28 0.47 1.83 16 24 N -0.75 -40.93 11.45 21.84 0.25 -40.68 16 25 Si 0.98 39.89 29.56 68.60 2.03 41.92 16 26 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 27 H -0.27 -10.08 7.11 99.48 0.71 -9.37 16 28 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 29 H 0.05 1.45 7.69 -2.39 -0.02 1.43 16 30 H 0.05 1.45 7.69 -2.39 -0.02 1.43 16 31 H 0.11 2.91 8.14 -2.39 -0.02 2.89 16 32 H 0.13 4.93 6.43 -2.91 -0.02 4.91 16 33 H 0.12 4.54 6.02 -2.91 -0.02 4.52 16 34 H 0.39 16.10 8.72 -92.71 -0.81 15.29 16 35 H 0.07 2.02 7.65 -2.39 -0.02 2.00 16 36 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.07 1.25 6.15 -2.39 -0.01 1.24 16 38 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16 39 H 0.08 1.67 7.74 -2.39 -0.02 1.65 16 40 H 0.09 1.60 5.96 -2.39 -0.01 1.58 16 41 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 43 H 0.35 4.58 8.92 -89.69 -0.80 3.78 16 44 H 0.06 1.11 7.96 -2.39 -0.02 1.09 16 45 H 0.09 1.73 7.68 -2.39 -0.02 1.71 16 46 H 0.07 1.90 8.14 -2.38 -0.02 1.88 16 47 H 0.08 2.08 8.07 -2.39 -0.02 2.06 16 48 H 0.28 13.71 8.29 -92.71 -0.77 12.95 16 Total: -1.00 -68.56 371.81 -1.73 -70.29 By element: Atomic # 1 Polarization: 45.14 SS G_CDS: -0.60 Total: 44.53 kcal Atomic # 6 Polarization: -16.24 SS G_CDS: 5.91 Total: -10.33 kcal Atomic # 7 Polarization: -112.60 SS G_CDS: -6.69 Total: -119.30 kcal Atomic # 8 Polarization: -24.74 SS G_CDS: -2.37 Total: -27.11 kcal Atomic # 14 Polarization: 39.89 SS G_CDS: 2.03 Total: 41.92 kcal Total: -68.56 -1.73 -70.29 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163315383.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.938 kcal (2) G-P(sol) polarization free energy of solvation -68.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds