Wall clock time and date at job start Tue Mar 31 2020 17:48:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42899 * 114.00159 * 2 1 4 4 C 1.53002 * 109.47719 * 180.02562 * 3 2 1 5 5 C 1.53006 * 109.49499 * 298.82644 * 4 3 2 6 6 C 1.53305 * 108.65891 * 298.00706 * 5 4 3 7 7 C 1.53022 * 109.49883 * 303.43018 * 6 5 4 8 8 O 1.43054 * 109.77999 * 56.77123 * 7 6 5 9 9 C 1.42686 * 113.70462 * 299.30208 * 8 7 6 10 10 H 1.09006 * 109.33768 * 302.22215 * 9 8 7 11 11 C 1.52902 * 110.71792 * 181.74806 * 9 8 7 12 12 C 1.53171 * 108.92224 * 181.61635 * 11 9 8 13 13 N 1.46766 * 109.85725 * 58.77401 * 12 11 9 14 14 C 1.38821 * 111.00067 * 174.69505 * 13 12 11 15 15 C 1.39961 * 119.97389 * 124.69107 * 14 13 12 16 16 N 1.32126 * 120.32186 * 180.25744 * 15 14 13 17 17 C 1.31929 * 120.26811 * 359.48371 * 16 15 14 18 18 C 1.40684 * 119.93839 * 0.49093 * 17 16 15 19 19 C 1.41269 * 120.15892 * 179.74616 * 18 17 16 20 20 H 1.08004 * 119.99845 * 155.18882 * 19 18 17 21 21 C 1.40048 * 120.00024 * 335.19384 * 19 18 17 22 22 N 1.30727 * 120.00255 * 342.16315 * 21 19 18 23 23 Si 1.86807 * 120.00169 * 162.16707 * 21 19 18 24 24 H 1.48498 * 109.47176 * 94.65779 * 23 21 19 25 25 H 1.48497 * 109.47326 * 214.66337 * 23 21 19 26 26 H 1.48501 * 109.46702 * 334.65979 * 23 21 19 27 27 N 1.32244 * 119.96976 * 304.66735 * 14 13 12 28 28 C 1.46975 * 111.57089 * 299.06169 * 13 12 11 29 29 H 1.08999 * 109.47093 * 299.99768 * 1 2 3 30 30 H 1.08997 * 109.47572 * 59.99992 * 1 2 3 31 31 H 1.09010 * 109.46948 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.47077 * 60.00214 * 3 2 1 33 33 H 1.09004 * 109.47174 * 300.00551 * 3 2 1 34 34 H 1.08997 * 109.60273 * 57.75518 * 5 4 3 35 35 H 1.08995 * 109.60449 * 178.08633 * 5 4 3 36 36 H 1.08999 * 109.46733 * 63.43888 * 6 5 4 37 37 H 1.09002 * 109.46190 * 183.42969 * 6 5 4 38 38 H 1.08990 * 109.41696 * 176.86813 * 7 6 5 39 39 H 1.09000 * 109.41681 * 296.67766 * 7 6 5 40 40 H 1.09003 * 109.56067 * 301.44874 * 11 9 8 41 41 H 1.09002 * 109.56388 * 61.67079 * 11 9 8 42 42 H 1.08999 * 109.40721 * 298.65481 * 12 11 9 43 43 H 1.08998 * 109.40184 * 178.88532 * 12 11 9 44 44 H 1.08002 * 119.83871 * 359.97438 * 15 14 13 45 45 H 1.08002 * 120.03094 * 180.25908 * 17 16 15 46 46 H 0.97003 * 120.00119 * 179.97438 * 22 21 19 47 47 H 1.08996 * 109.53082 * 181.23905 * 28 13 12 48 48 H 1.08997 * 109.52765 * 301.37320 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 3.9901 0.4510 1.2626 6 6 3.5752 1.2769 2.4857 7 6 4.1664 2.6840 2.3763 8 8 3.7438 3.2929 1.1528 9 6 4.1592 2.5844 -0.0140 10 1 5.2458 2.4969 -0.0154 11 6 3.7095 3.3153 -1.2795 12 6 4.1404 2.5009 -2.5031 13 7 3.5465 1.1601 -2.4439 14 6 3.8240 0.4416 -3.5989 15 6 4.4457 -0.8093 -3.5118 16 7 4.7176 -1.4968 -4.6069 17 6 4.3961 -1.0142 -5.7919 18 6 3.7705 0.2419 -5.8924 19 6 3.4291 0.7654 -7.1593 20 1 2.6297 1.4862 -7.2481 21 6 4.1271 0.3497 -8.3000 22 7 5.2912 -0.2324 -8.1781 23 14 3.3947 0.6270 -9.9960 24 1 3.9210 1.8955 -10.5610 25 1 3.7651 -0.5026 -10.8859 26 1 1.9158 0.7087 -9.8892 27 7 3.5004 0.9396 -4.7804 28 6 3.9866 0.4265 -1.2488 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0278 0.0005 32 1 1.6886 1.8464 0.8901 33 1 1.6885 1.8464 -0.8900 34 1 3.5169 -0.5300 1.3061 35 1 5.0737 0.3340 1.2476 36 1 2.4880 1.3420 2.5283 37 1 3.9462 0.7965 3.3912 38 1 3.8253 3.2868 3.2179 39 1 5.2545 2.6222 2.3934 40 1 2.6246 3.4201 -1.2744 41 1 4.1713 4.3020 -1.3147 42 1 5.2270 2.4155 -2.5170 43 1 3.8062 3.0053 -3.4097 44 1 4.7085 -1.2126 -2.5450 45 1 4.6164 -1.5813 -6.6843 46 1 5.7745 -0.5207 -8.9682 47 1 3.5445 -0.5698 -1.2495 48 1 5.0733 0.3428 -1.2523 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001165951024.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:48:04 Heat of formation + Delta-G solvation = -61.581446 kcal Electronic energy + Delta-G solvation = -30391.852009 eV Core-core repulsion = 26445.872476 eV Total energy + Delta-G solvation = -3945.979533 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -42.20919 -40.91953 -38.57244 -38.33983 -36.00950 -35.13603 -34.45410 -33.66351 -31.66446 -30.58612 -28.42995 -27.89522 -26.74455 -26.31145 -25.54428 -24.33303 -23.38205 -23.08493 -21.47869 -19.91773 -19.54470 -18.13324 -17.85135 -17.52207 -17.36644 -16.84576 -16.74640 -16.64781 -16.46274 -16.24068 -15.60545 -15.41430 -15.12522 -15.07838 -14.74473 -14.46674 -14.09077 -13.87114 -13.74300 -13.42790 -13.15994 -13.11528 -13.00547 -12.87963 -12.72192 -12.54946 -12.38925 -12.25156 -12.05366 -11.97977 -11.82443 -11.78378 -11.72445 -11.37534 -11.22474 -10.98444 -10.53543 -10.41404 -10.28196 -9.34470 -8.89518 -8.86377 -6.70583 0.55587 0.91299 1.39997 1.50120 1.58455 2.16120 2.47497 2.57844 2.69730 2.95470 3.48938 3.58700 3.61474 3.78089 4.00843 4.01466 4.05589 4.10065 4.14502 4.18915 4.24353 4.35601 4.39316 4.43501 4.46880 4.50766 4.54650 4.59334 4.65900 4.74043 4.76386 4.79608 4.83112 4.85814 4.93179 4.96023 5.00363 5.04754 5.10161 5.14299 5.20514 5.29994 5.38956 5.60703 5.89216 5.99303 6.20921 6.23155 6.31289 6.50285 6.62975 7.25715 7.72173 8.12466 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.020022 B = 0.003114 C = 0.003040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.091947 B = 8989.159055 C = 9206.960545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.404 6.404 3 C 0.088 3.912 4 C -0.074 4.074 5 C -0.107 4.107 6 C -0.148 4.148 7 C 0.054 3.946 8 O -0.385 6.385 9 C 0.105 3.895 10 H 0.069 0.931 11 C -0.102 4.102 12 C 0.074 3.926 13 N -0.473 5.473 14 C 0.295 3.705 15 C -0.152 4.152 16 N -0.438 5.438 17 C -0.046 4.046 18 C 0.224 3.776 19 C -0.448 4.448 20 H 0.087 0.913 21 C 0.041 3.959 22 N -0.804 5.804 23 Si 1.003 2.997 24 H -0.257 1.257 25 H -0.258 1.258 26 H -0.257 1.257 27 N -0.566 5.566 28 C 0.078 3.922 29 H 0.055 0.945 30 H 0.030 0.970 31 H 0.092 0.908 32 H 0.062 0.938 33 H 0.042 0.958 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.066 0.934 37 H 0.096 0.904 38 H 0.113 0.887 39 H 0.060 0.940 40 H 0.076 0.924 41 H 0.098 0.902 42 H 0.034 0.966 43 H 0.075 0.925 44 H 0.155 0.845 45 H 0.148 0.852 46 H 0.301 0.699 47 H 0.080 0.920 48 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.749 5.142 17.419 18.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.323 6.323 3 C 0.012 3.988 4 C -0.075 4.075 5 C -0.145 4.145 6 C -0.185 4.185 7 C -0.022 4.022 8 O -0.305 6.305 9 C 0.047 3.953 10 H 0.087 0.913 11 C -0.140 4.140 12 C -0.052 4.052 13 N -0.191 5.191 14 C 0.055 3.945 15 C -0.312 4.312 16 N -0.150 5.150 17 C -0.216 4.216 18 C 0.096 3.904 19 C -0.481 4.481 20 H 0.105 0.895 21 C -0.179 4.179 22 N -0.429 5.429 23 Si 0.821 3.179 24 H -0.182 1.182 25 H -0.182 1.182 26 H -0.180 1.180 27 N -0.291 5.291 28 C -0.049 4.049 29 H 0.074 0.926 30 H 0.049 0.951 31 H 0.111 0.889 32 H 0.080 0.920 33 H 0.060 0.940 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.085 0.915 37 H 0.114 0.886 38 H 0.131 0.869 39 H 0.078 0.922 40 H 0.095 0.905 41 H 0.116 0.884 42 H 0.053 0.947 43 H 0.094 0.906 44 H 0.172 0.828 45 H 0.165 0.835 46 H 0.113 0.887 47 H 0.098 0.902 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -3.026 5.134 17.435 18.425 hybrid contribution 0.510 -0.358 -1.031 1.204 sum -2.516 4.776 16.404 17.269 Atomic orbital electron populations 1.22789 0.80344 1.03241 1.00108 1.87790 1.20567 1.28549 1.95440 1.22368 0.92161 0.84247 1.00058 1.21166 0.95000 0.96447 0.94884 1.21563 1.01336 0.99337 0.92287 1.22173 1.01834 0.96052 0.98467 1.22825 0.99155 0.93963 0.86278 1.87901 1.78223 1.50392 1.13940 1.21952 0.97670 0.89555 0.86109 0.91342 1.21565 1.02963 0.98957 0.90512 1.21992 0.96348 0.87177 0.99696 1.58207 1.57190 1.03780 0.99957 1.20680 0.90827 0.92441 0.90512 1.23123 1.12654 0.97887 0.97544 1.67713 1.13717 1.34227 0.99342 1.23453 1.07455 0.96282 0.94397 1.19500 0.89148 0.89687 0.92094 1.19633 1.16051 1.22674 0.89762 0.89531 1.26999 0.93400 0.91499 1.05974 1.69773 1.10667 1.27215 1.35265 0.84891 0.79656 0.79513 0.73858 1.18175 1.18168 1.18032 1.68590 1.27260 1.35677 0.97536 1.22128 0.98028 0.97651 0.87095 0.92616 0.95130 0.88947 0.92043 0.94013 0.90939 0.90805 0.91512 0.88599 0.86946 0.92156 0.90504 0.88369 0.94719 0.90608 0.82842 0.83531 0.88749 0.90193 0.93538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 11.01 113.37 1.25 1.97 16 2 O -0.40 -11.57 9.37 -148.98 -1.40 -12.96 16 3 C 0.09 2.35 3.87 71.98 0.28 2.63 16 4 C -0.07 -1.86 0.36 -52.15 -0.02 -1.88 16 5 C -0.11 -2.14 4.79 30.70 0.15 -1.99 16 6 C -0.15 -2.25 5.73 30.70 0.18 -2.07 16 7 C 0.05 0.81 6.83 71.99 0.49 1.30 16 8 O -0.39 -8.26 9.84 -148.98 -1.47 -9.72 16 9 C 0.11 2.47 2.17 30.64 0.07 2.54 16 10 H 0.07 1.53 8.14 -2.38 -0.02 1.51 16 11 C -0.10 -2.68 5.46 30.62 0.17 -2.51 16 12 C 0.07 2.55 5.33 86.39 0.46 3.01 16 13 N -0.47 -18.33 3.94 -701.45 -2.76 -21.10 16 14 C 0.30 14.35 6.46 133.37 0.86 15.21 16 15 C -0.15 -7.49 10.01 85.07 0.85 -6.64 16 16 N -0.44 -23.82 10.47 -192.23 -2.01 -25.84 16 17 C -0.05 -2.62 9.88 85.28 0.84 -1.78 16 18 C 0.22 12.80 6.41 40.15 0.26 13.05 16 19 C -0.45 -24.27 9.28 23.45 0.22 -24.05 16 20 H 0.09 4.59 7.91 -2.91 -0.02 4.57 16 21 C 0.04 1.97 5.13 85.30 0.44 2.41 16 22 N -0.80 -40.29 10.97 21.84 0.24 -40.05 16 23 Si 1.00 35.97 29.60 68.60 2.03 38.00 16 24 H -0.26 -8.81 7.11 99.48 0.71 -8.10 16 25 H -0.26 -8.61 7.11 99.48 0.71 -7.90 16 26 H -0.26 -9.16 7.11 99.48 0.71 -8.45 16 27 N -0.57 -31.00 9.73 -186.00 -1.81 -32.81 16 28 C 0.08 2.50 2.79 86.24 0.24 2.74 16 29 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.09 1.87 8.14 -2.38 -0.02 1.85 16 32 H 0.06 1.47 6.00 -2.38 -0.01 1.46 16 33 H 0.04 1.30 5.87 -2.38 -0.01 1.29 16 34 H 0.07 1.58 7.66 -2.39 -0.02 1.56 16 35 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.07 1.12 6.56 -2.39 -0.02 1.11 16 37 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.08 2.11 6.46 -2.39 -0.02 2.09 16 41 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 42 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 43 H 0.08 2.97 7.59 -2.39 -0.02 2.95 16 44 H 0.15 6.58 5.78 -2.91 -0.02 6.57 16 45 H 0.15 8.38 6.17 -2.91 -0.02 8.36 16 46 H 0.30 13.27 8.29 -92.71 -0.77 12.50 16 47 H 0.08 2.81 6.52 -2.39 -0.02 2.79 16 48 H 0.05 1.45 7.72 -2.39 -0.02 1.43 16 Total: -1.00 -66.04 364.69 0.52 -65.52 By element: Atomic # 1 Polarization: 34.07 SS G_CDS: 0.97 Total: 35.04 kcal Atomic # 6 Polarization: -2.80 SS G_CDS: 6.73 Total: 3.93 kcal Atomic # 7 Polarization: -113.45 SS G_CDS: -6.34 Total: -119.80 kcal Atomic # 8 Polarization: -19.82 SS G_CDS: -2.86 Total: -22.69 kcal Atomic # 14 Polarization: 35.97 SS G_CDS: 2.03 Total: 38.00 kcal Total: -66.04 0.52 -65.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165951024.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.937 kcal (2) G-P(sol) polarization free energy of solvation -66.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds