Wall clock time and date at job start Tue Mar 31 2020 17:56:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42910 * 1 3 3 C 1.42896 * 113.99766 * 2 1 4 4 C 1.52997 * 109.47017 * 180.02562 * 3 2 1 5 5 N 1.46503 * 109.47196 * 64.99863 * 4 3 2 6 6 C 1.34779 * 119.99887 * 180.02562 * 5 4 3 7 7 O 1.21591 * 120.00327 * 359.97438 * 6 5 4 8 8 C 1.47544 * 119.99890 * 180.02562 * 6 5 4 9 9 C 1.40348 * 120.47646 * 180.02562 * 8 6 5 10 10 C 1.36851 * 118.49237 * 179.97438 * 9 8 6 11 11 C 1.39398 * 119.38109 * 0.02562 * 10 9 8 12 12 N 1.38454 * 119.54011 * 180.02562 * 11 10 9 13 13 C 1.46507 * 120.00209 * 359.97438 * 12 11 10 14 14 H 1.08998 * 109.40751 * 35.00167 * 13 12 11 15 15 C 1.52954 * 109.41426 * 154.86237 * 13 12 11 16 16 C 1.53229 * 109.40648 * 183.70503 * 15 13 12 17 17 C 1.51276 * 108.53661 * 305.37504 * 16 15 13 18 18 C 1.37867 * 120.84878 * 231.32365 * 17 16 15 19 19 N 1.31518 * 120.00316 * 0.02562 * 18 17 16 20 20 Si 1.86805 * 119.99965 * 179.97438 * 18 17 16 21 21 H 1.48502 * 109.46918 * 60.00219 * 20 18 17 22 22 H 1.48497 * 109.46938 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.47048 * 300.00000 * 20 18 17 24 24 C 1.51273 * 118.29913 * 51.34274 * 17 16 15 25 25 C 1.52955 * 109.41099 * 275.14447 * 13 12 11 26 26 N 1.32598 * 120.92157 * 359.97438 * 11 10 9 27 27 C 1.31672 * 121.63842 * 0.02562 * 26 11 10 28 28 H 1.09001 * 109.47014 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.46711 * 300.00004 * 1 2 3 30 30 H 1.09005 * 109.46775 * 60.00009 * 1 2 3 31 31 H 1.09001 * 109.47492 * 60.00061 * 3 2 1 32 32 H 1.09009 * 109.47458 * 300.00055 * 3 2 1 33 33 H 1.09001 * 109.47365 * 305.00193 * 4 3 2 34 34 H 1.09006 * 109.47713 * 184.99873 * 4 3 2 35 35 H 0.96995 * 119.99896 * 0.02562 * 5 4 3 36 36 H 1.08003 * 120.75066 * 0.02562 * 9 8 6 37 37 H 1.08005 * 120.30932 * 180.02562 * 10 9 8 38 38 H 0.97002 * 120.00190 * 180.02562 * 12 11 10 39 39 H 1.08998 * 109.48135 * 303.68683 * 15 13 12 40 40 H 1.09002 * 109.48159 * 63.71235 * 15 13 12 41 41 H 1.09004 * 109.62215 * 65.08439 * 16 15 13 42 42 H 1.08991 * 109.63113 * 185.46461 * 16 15 13 43 43 H 0.96999 * 120.00496 * 180.02562 * 19 18 17 44 44 H 1.08997 * 109.62632 * 68.36859 * 24 17 16 45 45 H 1.08995 * 109.62419 * 188.75051 * 24 17 16 46 46 H 1.08996 * 109.48971 * 296.27214 * 25 13 12 47 47 H 1.08999 * 109.48566 * 56.31824 * 25 13 12 48 48 H 1.08005 * 119.74662 * 180.27102 * 27 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 5.2883 0.3556 -1.4763 7 8 6.1072 0.6825 -0.6390 8 6 5.7317 -0.2685 -2.7375 9 6 7.0960 -0.4911 -2.9805 10 6 7.4619 -1.0732 -4.1637 11 6 6.4777 -1.4250 -5.0860 12 7 6.8442 -2.0146 -6.2839 13 6 8.2581 -2.2643 -6.5752 14 1 8.7768 -2.5275 -5.6533 15 6 8.3758 -3.4183 -7.5721 16 6 9.8555 -3.7403 -7.8058 17 6 10.5619 -2.4727 -8.2333 18 6 11.3471 -2.4487 -9.3663 19 7 11.4893 -3.5369 -10.0911 20 14 12.2081 -0.8701 -9.8726 21 1 13.1277 -0.4385 -8.7895 22 1 12.9849 -1.1069 -11.1159 23 1 11.1965 0.1897 -10.1147 24 6 10.3849 -1.2324 -7.3856 25 6 8.8855 -1.0020 -7.1689 26 7 5.1953 -1.2036 -4.8317 27 6 4.8005 -0.6461 -3.7061 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.6887 1.8464 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.8515 0.5682 0.8409 34 1 3.9786 2.1765 0.0889 35 1 3.3225 0.3040 -1.9208 36 1 7.8401 -0.2100 -2.2498 37 1 8.5036 -1.2584 -4.3808 38 1 6.1648 -2.2617 -6.9307 39 1 7.8712 -4.2975 -7.1717 40 1 7.9124 -3.1317 -8.5162 41 1 10.2992 -4.1131 -6.8826 42 1 9.9471 -4.4950 -8.5868 43 1 12.0420 -3.5201 -10.8880 44 1 10.8776 -1.3731 -6.4236 45 1 10.8197 -0.3740 -7.8976 46 1 8.4101 -0.7737 -8.1228 47 1 8.7426 -0.1675 -6.4824 48 1 3.7475 -0.4840 -3.5288 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167843109.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:56:01 Heat of formation + Delta-G solvation = -77.559783 kcal Electronic energy + Delta-G solvation = -27811.300098 eV Core-core repulsion = 23864.627692 eV Total energy + Delta-G solvation = -3946.672406 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.66708 -40.37778 -39.05323 -38.73615 -36.01152 -35.76542 -33.87303 -33.31424 -31.87741 -31.40144 -30.07475 -28.65090 -27.11146 -25.19243 -24.69140 -23.68405 -23.17935 -23.07042 -21.68792 -21.08362 -19.20384 -18.43404 -18.04522 -17.83687 -17.56237 -17.10461 -16.43999 -16.25794 -16.09241 -16.01452 -15.79822 -15.50822 -15.35004 -14.94066 -14.70384 -14.49209 -14.22414 -14.01433 -13.96460 -13.84244 -13.60371 -13.36288 -13.07408 -12.79772 -12.72650 -12.63633 -12.51243 -12.11635 -11.99886 -11.89596 -11.66789 -11.25732 -11.20295 -10.94467 -10.79308 -10.62421 -10.55859 -10.52037 -10.42429 -10.12448 -8.70555 -8.17375 -6.11049 -0.09527 0.37636 1.39579 1.41645 1.48367 1.92554 2.09771 2.19729 2.40333 2.83759 2.98181 3.11683 3.53151 3.84028 3.88911 3.96727 3.98123 4.05040 4.13715 4.21116 4.26138 4.44868 4.46404 4.58332 4.62607 4.67562 4.70373 4.73760 4.86959 4.89321 4.94725 4.95046 4.97010 5.04799 5.05961 5.20376 5.22216 5.29893 5.41572 5.51418 5.57866 5.63849 5.75886 5.82899 5.99710 6.22612 6.33225 6.53227 6.58551 6.95375 7.08109 7.23138 7.47113 8.93205 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.027682 B = 0.001997 C = 0.001925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1011.261090 B =14016.489814 C =14540.720350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.415 6.415 3 C 0.052 3.948 4 C 0.120 3.880 5 N -0.712 5.712 6 C 0.575 3.425 7 O -0.587 6.587 8 C -0.276 4.276 9 C 0.021 3.979 10 C -0.254 4.254 11 C 0.424 3.576 12 N -0.699 5.699 13 C 0.172 3.828 14 H 0.079 0.921 15 C -0.102 4.102 16 C 0.010 3.990 17 C -0.499 4.499 18 C 0.024 3.976 19 N -0.929 5.929 20 Si 0.939 3.061 21 H -0.267 1.267 22 H -0.296 1.296 23 H -0.267 1.267 24 C -0.013 4.013 25 C -0.112 4.112 26 N -0.566 5.566 27 C 0.199 3.801 28 H 0.089 0.911 29 H 0.051 0.949 30 H 0.054 0.946 31 H 0.085 0.915 32 H 0.075 0.925 33 H 0.061 0.939 34 H 0.089 0.911 35 H 0.412 0.588 36 H 0.142 0.858 37 H 0.141 0.859 38 H 0.407 0.593 39 H 0.056 0.944 40 H 0.049 0.951 41 H 0.006 0.994 42 H 0.030 0.970 43 H 0.262 0.738 44 H 0.029 0.971 45 H 0.026 0.974 46 H 0.047 0.953 47 H 0.055 0.945 48 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.048 9.644 17.506 29.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.335 6.335 3 C -0.025 4.025 4 C -0.004 4.004 5 N -0.365 5.365 6 C 0.363 3.637 7 O -0.469 6.469 8 C -0.285 4.285 9 C -0.005 4.005 10 C -0.279 4.279 11 C 0.186 3.814 12 N -0.326 5.326 13 C 0.067 3.933 14 H 0.097 0.903 15 C -0.141 4.141 16 C -0.028 4.028 17 C -0.518 4.518 18 C -0.174 4.174 19 N -0.568 5.568 20 Si 0.766 3.234 21 H -0.192 1.192 22 H -0.223 1.223 23 H -0.192 1.192 24 C -0.051 4.051 25 C -0.151 4.151 26 N -0.284 5.284 27 C 0.038 3.962 28 H 0.108 0.892 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.103 0.897 32 H 0.093 0.907 33 H 0.079 0.921 34 H 0.107 0.893 35 H 0.250 0.750 36 H 0.160 0.840 37 H 0.159 0.841 38 H 0.243 0.757 39 H 0.075 0.925 40 H 0.068 0.932 41 H 0.024 0.976 42 H 0.048 0.952 43 H 0.071 0.929 44 H 0.047 0.953 45 H 0.044 0.956 46 H 0.066 0.934 47 H 0.074 0.926 48 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -21.691 9.344 17.263 29.255 hybrid contribution 0.793 0.627 -0.673 1.214 sum -20.899 9.971 16.590 28.485 Atomic orbital electron populations 1.22912 0.79346 1.03638 1.01112 1.87907 1.21508 1.28412 1.95697 1.22856 0.91183 0.85240 1.03188 1.21482 0.93626 0.98999 0.86254 1.45716 1.06614 1.62845 1.21307 1.18026 0.82593 0.77347 0.85692 1.90739 1.54098 1.54137 1.47916 1.20481 0.95449 1.14279 0.98289 1.21197 0.95436 0.89103 0.94735 1.21294 1.00854 1.09673 0.96112 1.18765 0.89256 0.86895 0.86446 1.44934 1.08591 1.62731 1.16353 1.20868 0.78738 0.95316 0.98352 0.90269 1.21698 0.98914 0.96028 0.97451 1.19291 0.91278 0.96229 0.96023 1.20620 1.27317 0.95980 1.07901 1.25554 0.96989 0.98552 0.96354 1.69948 1.40421 1.29467 1.17000 0.85862 0.79116 0.81033 0.77361 1.19250 1.22326 1.19224 1.19642 0.93319 0.95077 0.97060 1.21902 0.97263 0.96344 0.99570 1.67309 1.15859 1.21771 1.23487 1.22996 1.00115 0.87353 0.85710 0.89226 0.93008 0.92738 0.89681 0.90678 0.92059 0.89318 0.75003 0.84000 0.84096 0.75652 0.92509 0.93221 0.97590 0.95169 0.92851 0.95281 0.95591 0.93409 0.92645 0.79502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 113.37 1.25 1.42 16 2 O -0.42 -5.19 10.65 -148.98 -1.59 -6.78 16 3 C 0.05 0.43 6.07 71.98 0.44 0.87 16 4 C 0.12 1.66 6.06 86.38 0.52 2.18 16 5 N -0.71 -11.75 5.46 -466.25 -2.54 -14.30 16 6 C 0.57 13.94 7.77 86.70 0.67 14.62 16 7 O -0.59 -18.59 16.41 -4.00 -0.07 -18.66 16 8 C -0.28 -6.68 5.89 -19.99 -0.12 -6.80 16 9 C 0.02 0.56 9.65 22.46 0.22 0.78 16 10 C -0.25 -7.07 8.72 22.22 0.19 -6.88 16 11 C 0.42 12.13 7.61 133.25 1.01 13.14 16 12 N -0.70 -20.29 5.22 -324.77 -1.69 -21.99 16 13 C 0.17 5.71 2.04 44.96 0.09 5.80 16 14 H 0.08 2.63 6.42 -2.39 -0.02 2.62 16 15 C -0.10 -3.85 5.40 30.66 0.17 -3.69 16 16 C 0.01 0.46 5.96 30.11 0.18 0.64 16 17 C -0.50 -24.87 5.51 -16.17 -0.09 -24.96 16 18 C 0.02 1.28 5.46 84.65 0.46 1.75 16 19 N -0.93 -53.12 12.74 21.44 0.27 -52.84 16 20 Si 0.94 42.58 26.80 68.60 1.84 44.41 16 21 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 22 H -0.30 -13.54 7.11 99.48 0.71 -12.84 16 23 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 24 C -0.01 -0.54 5.60 30.11 0.17 -0.38 16 25 C -0.11 -4.04 5.39 30.66 0.17 -3.88 16 26 N -0.57 -14.92 10.38 -192.32 -2.00 -16.91 16 27 C 0.20 4.26 10.71 85.04 0.91 5.17 16 28 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.05 0.24 8.14 -2.39 -0.02 0.23 16 30 H 0.05 0.24 8.14 -2.38 -0.02 0.22 16 31 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.08 0.39 8.14 -2.38 -0.02 0.37 16 33 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.09 1.16 8.14 -2.38 -0.02 1.14 16 35 H 0.41 4.79 6.52 -92.71 -0.60 4.19 16 36 H 0.14 3.66 7.73 -2.91 -0.02 3.64 16 37 H 0.14 3.91 6.06 -2.91 -0.02 3.89 16 38 H 0.41 11.07 8.72 -92.71 -0.81 10.26 16 39 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 40 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 41 H 0.01 0.27 8.14 -2.38 -0.02 0.25 16 42 H 0.03 1.59 7.08 -2.39 -0.02 1.57 16 43 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 44 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 45 H 0.03 1.10 5.17 -2.39 -0.01 1.08 16 46 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 47 H 0.05 1.82 7.66 -2.39 -0.02 1.80 16 48 H 0.19 2.42 6.41 -2.91 -0.02 2.40 16 Total: -1.00 -66.07 385.61 0.05 -66.02 By element: Atomic # 1 Polarization: 21.67 SS G_CDS: -0.42 Total: 21.26 kcal Atomic # 6 Polarization: -6.46 SS G_CDS: 6.24 Total: -0.21 kcal Atomic # 7 Polarization: -100.08 SS G_CDS: -5.96 Total: -106.04 kcal Atomic # 8 Polarization: -23.78 SS G_CDS: -1.65 Total: -25.44 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 1.84 Total: 44.41 kcal Total: -66.07 0.05 -66.02 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167843109.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.538 kcal (2) G-P(sol) polarization free energy of solvation -66.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds