Wall clock time and date at job start Tue Mar 31 2020 18:00:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34224 * 117.00182 * 2 1 4 4 O 1.20820 * 120.00137 * 0.02562 * 3 2 1 5 5 C 1.50701 * 120.00041 * 179.97438 * 3 2 1 6 6 H 1.09003 * 109.46931 * 60.00491 * 5 3 2 7 7 C 1.52995 * 109.47468 * 300.00269 * 5 3 2 8 8 C 1.53000 * 109.47320 * 174.99786 * 7 5 3 9 9 C 1.53006 * 109.47190 * 295.00118 * 8 7 5 10 10 C 1.53000 * 109.47190 * 179.97438 * 9 8 7 11 11 C 1.52997 * 109.47216 * 59.99826 * 10 9 8 12 12 C 1.53006 * 109.47183 * 300.00178 * 11 10 9 13 13 C 1.52997 * 109.47216 * 174.99944 * 8 7 5 14 14 N 1.46498 * 109.47380 * 180.02562 * 5 3 2 15 15 C 1.37938 * 120.00244 * 275.00379 * 14 5 3 16 16 N 1.32624 * 120.23265 * 0.24513 * 15 14 5 17 17 C 1.32252 * 120.08395 * 180.27698 * 16 15 14 18 18 C 1.38962 * 120.56605 * 359.72793 * 17 16 15 19 19 N 1.31719 * 120.47966 * 359.97438 * 18 17 16 20 20 C 1.33903 * 119.89383 * 0.02562 * 19 18 17 21 21 C 1.40826 * 120.27955 * 179.97438 * 20 19 18 22 22 H 1.07999 * 120.00298 * 179.97438 * 21 20 19 23 23 C 1.40125 * 119.99754 * 359.97438 * 21 20 19 24 24 N 1.30739 * 119.99790 * 359.72510 * 23 21 20 25 25 Si 1.86795 * 120.00026 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.47317 * 359.97438 * 25 23 21 27 27 H 1.48492 * 109.47189 * 120.00046 * 25 23 21 28 28 H 1.48501 * 109.47213 * 240.00210 * 25 23 21 29 29 H 1.08999 * 109.47625 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47229 * 300.00010 * 1 2 3 31 31 H 1.09002 * 109.47090 * 59.99888 * 1 2 3 32 32 H 1.08999 * 109.47418 * 294.99923 * 7 5 3 33 33 H 1.09006 * 109.47279 * 54.99833 * 7 5 3 34 34 H 1.08998 * 109.47468 * 55.00162 * 8 7 5 35 35 H 1.08998 * 109.46814 * 299.99586 * 9 8 7 36 36 H 1.09001 * 109.47045 * 59.99926 * 9 8 7 37 37 H 1.08997 * 109.46945 * 300.00083 * 10 9 8 38 38 H 1.08997 * 109.46947 * 179.97438 * 10 9 8 39 39 H 1.09005 * 109.47064 * 180.02562 * 11 10 9 40 40 H 1.08998 * 109.47424 * 60.00024 * 11 10 9 41 41 H 1.08998 * 109.46952 * 299.99445 * 12 11 10 42 42 H 1.09001 * 109.47045 * 179.97438 * 12 11 10 43 43 H 1.08999 * 109.47590 * 300.00235 * 13 8 7 44 44 H 1.09007 * 109.46911 * 60.00327 * 13 8 7 45 45 H 0.96994 * 120.00117 * 95.00196 * 14 5 3 46 46 H 1.07999 * 119.71743 * 179.70388 * 17 16 15 47 47 H 1.08001 * 119.76293 * 180.02562 * 18 17 16 48 48 H 0.97000 * 119.99479 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2092 0.0005 5 6 3.5663 1.2748 0.0006 6 1 3.9563 0.7805 -0.8892 7 6 4.1129 0.5814 1.2501 8 6 5.6414 0.5515 1.1894 9 6 6.0882 -0.3207 0.0143 10 6 7.6167 -0.3501 -0.0468 11 6 8.1682 -0.9298 1.2573 12 6 7.7214 -0.0576 2.4323 13 6 6.1924 -0.0286 2.4935 14 7 3.9818 2.6796 0.0011 15 6 4.0779 3.3709 -1.1887 16 7 3.7907 2.7696 -2.3354 17 6 3.8891 3.4336 -3.4749 18 6 4.2874 4.7649 -3.4850 19 7 4.5725 5.3855 -2.3586 20 6 4.4791 4.7312 -1.1941 21 6 4.7824 5.3867 0.0149 22 1 4.7053 4.8548 0.9517 23 6 5.1844 6.7290 0.0024 24 7 5.2830 7.3712 -1.1321 25 14 5.5861 7.5986 1.6060 26 1 5.4020 6.6570 2.7394 27 1 6.9946 8.0678 1.5754 28 1 4.6802 8.7627 1.7782 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 3.7952 1.1286 2.1376 33 1 3.7311 -0.4386 1.2961 34 1 6.0196 1.5648 1.0541 35 1 5.7101 -1.3340 0.1497 36 1 5.6957 0.0926 -0.9148 37 1 7.9944 0.6633 -0.1823 38 1 7.9349 -0.9718 -0.8836 39 1 9.2572 -0.9503 1.2139 40 1 7.7905 -1.9432 1.3928 41 1 8.0992 0.9558 2.2968 42 1 8.1140 -0.4709 3.3614 43 1 5.8741 0.5927 3.3306 44 1 5.8143 -1.0420 2.6287 45 1 4.1892 3.1237 0.8381 46 1 3.6583 2.9368 -4.4057 47 1 4.3630 5.2948 -4.4230 48 1 5.5616 8.3003 -1.1407 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169157241.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:29 Heat of formation + Delta-G solvation = -61.361911 kcal Electronic energy + Delta-G solvation = -29996.892701 eV Core-core repulsion = 26050.922688 eV Total energy + Delta-G solvation = -3945.970013 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.25445 -38.97507 -38.61609 -36.32595 -35.27650 -33.96009 -32.68825 -31.40756 -30.70309 -29.81054 -28.09147 -26.93714 -25.86899 -24.33496 -22.55074 -22.17053 -21.59156 -21.03462 -19.98957 -19.54349 -17.61620 -17.29439 -16.76933 -16.54626 -16.03066 -15.61218 -15.25576 -14.94322 -14.39476 -14.15190 -14.09801 -13.96070 -13.74393 -13.49407 -13.10605 -12.94190 -12.90612 -12.34671 -12.23819 -12.08923 -12.01070 -11.86336 -11.58397 -11.41614 -11.34674 -11.14022 -11.04150 -10.80452 -10.62054 -10.49675 -10.37904 -10.34163 -10.19241 -10.01095 -9.84299 -9.75693 -9.41499 -9.34530 -8.59917 -7.35631 -6.87879 -6.41241 -4.42497 2.63846 2.69859 2.91835 3.06017 3.09095 3.14118 3.32720 3.89465 4.17870 4.66062 4.74499 4.75098 4.79873 5.03767 5.19318 5.19674 5.25754 5.31794 5.40560 5.43464 5.53348 5.59183 5.61503 5.67079 5.69143 5.74367 5.79277 5.90603 5.99039 6.00603 6.04111 6.12702 6.16885 6.20276 6.26596 6.30983 6.35231 6.44035 6.51137 6.63569 6.71656 6.75496 6.99782 7.08054 7.64787 7.91934 8.03904 8.23898 8.34307 8.61616 8.84706 9.42699 10.00074 10.24709 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.007893 B = 0.004996 C = 0.003933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3546.817890 B = 5603.216902 C = 7116.698694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.368 6.368 3 C 0.439 3.561 4 O -0.491 6.491 5 C 0.180 3.820 6 H 0.120 0.880 7 C -0.117 4.117 8 C -0.085 4.085 9 C -0.115 4.115 10 C -0.119 4.119 11 C -0.118 4.118 12 C -0.120 4.120 13 C -0.112 4.112 14 N -0.694 5.694 15 C 0.264 3.736 16 N -0.497 5.497 17 C -0.086 4.086 18 C 0.034 3.966 19 N -0.448 5.448 20 C 0.200 3.800 21 C -0.420 4.420 22 H 0.082 0.918 23 C 0.069 3.931 24 N -0.713 5.713 25 Si 0.906 3.094 26 H -0.260 1.260 27 H -0.273 1.273 28 H -0.273 1.273 29 H 0.094 0.906 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.069 0.931 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.059 0.941 36 H 0.068 0.932 37 H 0.063 0.937 38 H 0.058 0.942 39 H 0.056 0.944 40 H 0.058 0.942 41 H 0.063 0.937 42 H 0.057 0.943 43 H 0.061 0.939 44 H 0.060 0.940 45 H 0.408 0.592 46 H 0.122 0.878 47 H 0.124 0.876 48 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.361 -14.341 6.732 15.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.285 6.285 3 C 0.278 3.722 4 O -0.375 6.375 5 C 0.070 3.930 6 H 0.137 0.863 7 C -0.155 4.155 8 C -0.103 4.103 9 C -0.153 4.153 10 C -0.157 4.157 11 C -0.155 4.155 12 C -0.157 4.157 13 C -0.150 4.150 14 N -0.335 5.335 15 C 0.018 3.982 16 N -0.218 5.218 17 C -0.240 4.240 18 C -0.129 4.129 19 N -0.166 5.166 20 C 0.067 3.933 21 C -0.454 4.454 22 H 0.100 0.900 23 C -0.157 4.157 24 N -0.335 5.335 25 Si 0.730 3.270 26 H -0.183 1.183 27 H -0.198 1.198 28 H -0.198 1.198 29 H 0.113 0.887 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.088 0.912 33 H 0.102 0.898 34 H 0.102 0.898 35 H 0.078 0.922 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.077 0.923 41 H 0.082 0.918 42 H 0.075 0.925 43 H 0.079 0.921 44 H 0.078 0.922 45 H 0.246 0.754 46 H 0.140 0.860 47 H 0.141 0.859 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.132 -13.917 6.392 15.357 hybrid contribution -0.262 0.738 0.719 1.063 sum 0.870 -13.179 7.111 15.001 Atomic orbital electron populations 1.23126 0.77736 1.02816 1.02188 1.86524 1.22465 1.34675 1.84797 1.25359 0.93512 0.81094 0.72225 1.90659 1.66724 1.36378 1.43770 1.20248 0.84943 0.86367 1.01445 0.86262 1.21872 0.96321 1.01102 0.96180 1.21144 0.93456 1.00859 0.94865 1.21621 0.95445 0.99520 0.98680 1.21513 0.95928 1.01340 0.96910 1.21527 0.99805 0.99042 0.95132 1.21537 0.95936 1.00422 0.97830 1.21576 0.95314 1.00865 0.97215 1.43454 1.75014 1.08617 1.06375 1.19177 1.02257 0.90814 0.85992 1.67211 1.18521 1.38336 0.97735 1.22217 1.13031 0.94366 0.94362 1.23152 0.98999 0.92977 0.97759 1.69502 1.17588 1.33406 0.96054 1.18992 0.93691 0.87087 0.93558 1.19260 1.38225 0.95587 0.92295 0.89952 1.26011 0.94380 0.97801 0.97502 1.70110 1.27453 1.09635 1.26255 0.86285 0.78751 0.79853 0.82075 1.18334 1.19788 1.19822 0.88726 0.92462 0.92305 0.91187 0.89802 0.89829 0.92198 0.91294 0.91795 0.92364 0.92537 0.92330 0.91801 0.92462 0.92067 0.92167 0.75366 0.86048 0.85859 0.91514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.44 10.56 101.05 1.07 1.51 16 2 O -0.37 -5.68 10.37 -39.24 -0.41 -6.09 16 3 C 0.44 8.07 7.30 36.01 0.26 8.33 16 4 O -0.49 -10.93 16.09 -18.75 -0.30 -11.23 16 5 C 0.18 3.03 2.36 -69.09 -0.16 2.87 16 6 H 0.12 2.10 5.75 -51.93 -0.30 1.80 16 7 C -0.12 -1.47 4.18 -26.73 -0.11 -1.59 16 8 C -0.08 -1.02 2.13 -90.62 -0.19 -1.22 16 9 C -0.12 -1.39 4.96 -26.73 -0.13 -1.52 16 10 C -0.12 -1.36 5.92 -26.73 -0.16 -1.52 16 11 C -0.12 -1.15 5.92 -26.73 -0.16 -1.31 16 12 C -0.12 -1.19 5.93 -26.70 -0.16 -1.35 16 13 C -0.11 -1.14 5.21 -26.71 -0.14 -1.28 16 14 N -0.69 -13.91 4.01 -54.54 -0.22 -14.13 16 15 C 0.26 6.42 7.38 -154.82 -1.14 5.28 16 16 N -0.50 -12.07 9.35 -11.67 -0.11 -12.18 16 17 C -0.09 -2.03 11.22 -17.10 -0.19 -2.22 16 18 C 0.03 0.85 11.21 -17.33 -0.19 0.66 16 19 N -0.45 -12.44 8.03 -10.79 -0.09 -12.52 16 20 C 0.20 5.39 6.56 -84.61 -0.56 4.83 16 21 C -0.42 -10.72 8.89 -37.90 -0.34 -11.06 16 22 H 0.08 1.91 6.12 -52.49 -0.32 1.58 16 23 C 0.07 1.70 5.50 -17.31 -0.10 1.61 16 24 N -0.71 -18.74 11.48 55.56 0.64 -18.10 16 25 Si 0.91 18.12 29.56 -169.99 -5.03 13.09 16 26 H -0.26 -5.01 7.11 56.52 0.40 -4.61 16 27 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 28 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 29 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 30 H 0.06 0.69 8.13 -51.93 -0.42 0.27 16 31 H 0.06 0.78 8.13 -51.93 -0.42 0.36 16 32 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.08 0.94 8.00 -51.93 -0.42 0.52 16 34 H 0.08 1.19 7.62 -51.93 -0.40 0.80 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.97 6.46 -51.93 -0.34 0.64 16 37 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.41 7.85 6.58 -40.82 -0.27 7.58 16 46 H 0.12 2.51 8.06 -52.49 -0.42 2.08 16 47 H 0.12 2.70 8.06 -52.49 -0.42 2.28 16 48 H 0.27 6.51 8.29 -40.82 -0.34 6.18 16 LS Contribution 386.22 15.07 5.82 5.82 Total: -1.00 -31.73 386.22 -9.60 -41.33 By element: Atomic # 1 Polarization: 19.50 SS G_CDS: -7.51 Total: 11.99 kcal Atomic # 6 Polarization: 4.43 SS G_CDS: -2.40 Total: 2.03 kcal Atomic # 7 Polarization: -57.16 SS G_CDS: 0.22 Total: -56.94 kcal Atomic # 8 Polarization: -16.61 SS G_CDS: -0.71 Total: -17.32 kcal Atomic # 14 Polarization: 18.12 SS G_CDS: -5.03 Total: 13.09 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -31.73 -9.60 -41.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169157241.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.033 kcal (2) G-P(sol) polarization free energy of solvation -31.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds