Wall clock time and date at job start Tue Mar 31 2020 18:00:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34231 * 117.00401 * 2 1 4 4 O 1.20826 * 119.99522 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00508 * 179.97438 * 3 2 1 6 6 H 1.09004 * 109.47186 * 59.99206 * 5 3 2 7 7 C 1.53001 * 109.47110 * 299.99863 * 5 3 2 8 8 C 1.52995 * 109.47311 * 175.00160 * 7 5 3 9 9 C 1.53002 * 109.46710 * 294.99536 * 8 7 5 10 10 C 1.53006 * 109.46934 * 179.97438 * 9 8 7 11 11 C 1.53008 * 109.46901 * 60.00280 * 10 9 8 12 12 C 1.52999 * 109.46909 * 300.00133 * 11 10 9 13 13 C 1.52993 * 109.47556 * 59.99762 * 12 11 10 14 14 N 1.46498 * 109.47310 * 179.97438 * 5 3 2 15 15 C 1.38797 * 120.00294 * 274.99857 * 14 5 3 16 16 C 1.40083 * 120.76045 * 179.97438 * 15 14 5 17 17 N 1.31664 * 119.13968 * 179.97438 * 16 15 14 18 18 C 1.33602 * 120.79054 * 0.02562 * 17 16 15 19 19 C 1.41148 * 119.17123 * 179.97438 * 18 17 16 20 20 H 1.07999 * 119.99497 * 353.61297 * 19 18 17 21 21 C 1.40040 * 119.99816 * 173.61365 * 19 18 17 22 22 N 1.30725 * 120.00081 * 6.33361 * 21 19 18 23 23 Si 1.86803 * 119.99808 * 186.33114 * 21 19 18 24 24 H 1.48502 * 109.46780 * 94.98840 * 23 21 19 25 25 H 1.48500 * 109.47295 * 214.98967 * 23 21 19 26 26 H 1.48496 * 109.47200 * 334.98918 * 23 21 19 27 27 N 1.33604 * 121.65433 * 359.97438 * 18 17 16 28 28 C 1.31651 * 120.79247 * 359.97438 * 27 18 17 29 29 H 1.09001 * 109.46940 * 60.00277 * 1 2 3 30 30 H 1.08997 * 109.47048 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46904 * 300.00277 * 1 2 3 32 32 H 1.09005 * 109.46524 * 294.99689 * 7 5 3 33 33 H 1.08999 * 109.47270 * 54.99288 * 7 5 3 34 34 H 1.09005 * 109.47167 * 54.99484 * 8 7 5 35 35 H 1.08991 * 109.47340 * 300.00025 * 9 8 7 36 36 H 1.09000 * 109.46921 * 60.00599 * 9 8 7 37 37 H 1.08999 * 109.47336 * 300.00615 * 10 9 8 38 38 H 1.09000 * 109.46892 * 180.02562 * 10 9 8 39 39 H 1.08993 * 109.47019 * 180.02562 * 11 10 9 40 40 H 1.09000 * 109.46615 * 59.99544 * 11 10 9 41 41 H 1.09006 * 109.46653 * 299.99449 * 12 11 10 42 42 H 1.09006 * 109.46780 * 180.02562 * 12 11 10 43 43 H 1.09005 * 109.47450 * 180.02562 * 13 12 11 44 44 H 1.09005 * 109.46872 * 60.00111 * 13 12 11 45 45 H 0.97000 * 120.00050 * 95.00026 * 14 5 3 46 46 H 1.08005 * 120.43274 * 359.96390 * 16 15 14 47 47 H 0.97003 * 119.99655 * 179.97438 * 22 21 19 48 48 H 1.08006 * 120.42831 * 180.02562 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9565 0.7804 -0.8891 7 6 4.1129 0.5816 1.2502 8 6 5.6414 0.5518 1.1896 9 6 6.0882 -0.3206 0.0147 10 6 7.6167 -0.3499 -0.0463 11 6 8.1682 -0.9295 1.2580 12 6 7.7212 -0.0573 2.4328 13 6 6.1928 -0.0278 2.4938 14 7 3.9817 2.6797 -0.0002 15 6 4.0786 3.3742 -1.1980 16 6 4.4737 4.7180 -1.2171 17 7 4.5554 5.3459 -2.3715 18 6 4.2664 4.7168 -3.5141 19 6 4.3649 5.4230 -4.7323 20 1 4.5697 6.4834 -4.7266 21 6 4.1971 4.7487 -5.9481 22 7 3.8277 3.4947 -5.9545 23 14 4.5011 5.6411 -7.5608 24 1 5.8909 5.3821 -8.0154 25 1 3.5453 5.1504 -8.5859 26 1 4.3088 7.1002 -7.3630 27 7 3.8865 3.4361 -3.5327 28 6 3.7845 2.7471 -2.4156 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 3.7951 1.1290 2.1377 33 1 3.7311 -0.4383 1.2963 34 1 6.0195 1.5651 1.0542 35 1 5.7101 -1.3338 0.1501 36 1 5.6958 0.0927 -0.9144 37 1 7.9945 0.6635 -0.1818 38 1 7.9350 -0.9710 -0.8836 39 1 9.2570 -0.9500 1.2147 40 1 7.7903 -1.9429 1.3935 41 1 8.0991 0.9562 2.2972 42 1 8.1145 -0.4700 3.3619 43 1 5.8744 0.5940 3.3305 44 1 5.8150 -1.0413 2.6294 45 1 4.1891 3.1246 0.8365 46 1 4.7082 5.2325 -0.2968 47 1 3.7111 3.0278 -6.7967 48 1 3.4772 1.7119 -2.4375 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169164133.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:33 Heat of formation + Delta-G solvation = -56.597406 kcal Electronic energy + Delta-G solvation = -29424.718828 eV Core-core repulsion = 25478.955419 eV Total energy + Delta-G solvation = -3945.763409 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.46452 -39.05367 -38.72432 -36.56556 -35.54810 -33.66457 -32.50446 -31.71171 -30.83419 -29.83353 -28.37653 -27.21679 -25.19248 -24.57610 -22.81397 -22.68579 -21.53379 -21.17829 -20.10175 -19.69017 -17.80645 -17.48228 -16.82331 -16.52309 -16.06323 -15.59602 -15.40236 -15.18367 -14.49670 -14.31358 -14.27748 -14.10785 -13.94629 -13.59301 -13.24212 -12.98889 -12.65186 -12.54955 -12.33325 -12.22232 -12.12423 -11.94894 -11.77375 -11.31649 -11.20642 -11.18386 -11.17332 -10.95347 -10.64042 -10.61111 -10.53050 -10.49647 -10.18263 -10.15324 -9.98472 -9.72461 -9.38553 -9.17831 -8.93190 -7.25835 -6.85215 -6.41174 -4.37734 2.46433 2.62891 2.89572 2.97192 3.13791 3.19009 3.23384 3.99808 4.05115 4.48712 4.60208 4.64908 4.77049 4.87624 5.01758 5.03269 5.15421 5.19235 5.23220 5.26500 5.38586 5.45259 5.47266 5.49733 5.56943 5.59660 5.67104 5.78339 5.83133 5.85572 5.92420 5.97942 6.01930 6.06273 6.12389 6.17361 6.21954 6.27443 6.34083 6.41530 6.47194 6.57187 7.07813 7.13190 7.34514 7.91711 8.11815 8.27653 8.41393 8.57984 8.75256 9.21614 10.24491 10.40292 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.010459 B = 0.003570 C = 0.003008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2676.588854 B = 7840.169439 C = 9305.903168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.366 6.366 3 C 0.429 3.571 4 O -0.488 6.488 5 C 0.178 3.822 6 H 0.113 0.887 7 C -0.114 4.114 8 C -0.083 4.083 9 C -0.117 4.117 10 C -0.120 4.120 11 C -0.119 4.119 12 C -0.119 4.119 13 C -0.113 4.113 14 N -0.717 5.717 15 C -0.040 4.040 16 C 0.112 3.888 17 N -0.566 5.566 18 C 0.372 3.628 19 C -0.413 4.413 20 H 0.089 0.911 21 C 0.069 3.931 22 N -0.725 5.725 23 Si 0.914 3.086 24 H -0.270 1.270 25 H -0.277 1.277 26 H -0.261 1.261 27 N -0.475 5.475 28 C 0.106 3.894 29 H 0.061 0.939 30 H 0.096 0.904 31 H 0.057 0.943 32 H 0.070 0.930 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.061 0.939 36 H 0.068 0.932 37 H 0.063 0.937 38 H 0.060 0.940 39 H 0.057 0.943 40 H 0.059 0.941 41 H 0.062 0.938 42 H 0.057 0.943 43 H 0.060 0.940 44 H 0.061 0.939 45 H 0.392 0.608 46 H 0.127 0.873 47 H 0.271 0.729 48 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.506 -12.687 14.171 19.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.283 6.283 3 C 0.268 3.732 4 O -0.373 6.373 5 C 0.067 3.933 6 H 0.130 0.870 7 C -0.152 4.152 8 C -0.102 4.102 9 C -0.154 4.154 10 C -0.157 4.157 11 C -0.156 4.156 12 C -0.157 4.157 13 C -0.150 4.150 14 N -0.353 5.353 15 C -0.144 4.144 16 C -0.062 4.062 17 N -0.285 5.285 18 C 0.131 3.869 19 C -0.450 4.450 20 H 0.107 0.893 21 C -0.156 4.156 22 N -0.348 5.348 23 Si 0.738 3.262 24 H -0.195 1.195 25 H -0.202 1.202 26 H -0.185 1.185 27 N -0.192 5.192 28 C -0.071 4.071 29 H 0.080 0.920 30 H 0.115 0.885 31 H 0.076 0.924 32 H 0.088 0.912 33 H 0.103 0.897 34 H 0.099 0.901 35 H 0.080 0.920 36 H 0.086 0.914 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.078 0.922 41 H 0.080 0.920 42 H 0.076 0.924 43 H 0.078 0.922 44 H 0.079 0.921 45 H 0.226 0.774 46 H 0.144 0.856 47 H 0.082 0.918 48 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 2.240 -12.138 12.975 17.908 hybrid contribution -0.374 -0.001 0.462 0.595 sum 1.866 -12.139 13.437 18.205 Atomic orbital electron populations 1.23177 0.77349 1.03095 1.02341 1.86529 1.22777 1.34411 1.84557 1.25550 0.93667 0.81304 0.72683 1.90673 1.66729 1.36393 1.43502 1.20281 0.85090 0.86325 1.01645 0.87015 1.21836 0.96292 1.01194 0.95858 1.21133 0.93353 1.00681 0.94986 1.21637 0.95632 0.99676 0.98481 1.21515 0.95782 1.01382 0.97039 1.21535 0.99932 0.99110 0.95028 1.21520 0.95842 1.00327 0.97973 1.21570 0.95387 1.00990 0.97060 1.43281 1.77290 1.08619 1.06116 1.19081 1.13057 0.94930 0.87298 1.22156 0.98278 0.89361 0.96393 1.68573 1.22822 1.38781 0.98298 1.19803 0.90128 0.86231 0.90718 1.19107 1.41828 0.96322 0.87702 0.89273 1.26002 0.93644 0.94916 1.01029 1.70150 1.27980 1.09183 1.27504 0.86206 0.78813 0.80675 0.80459 1.19522 1.20223 1.18452 1.69260 1.15991 1.08366 1.25586 1.22557 0.98275 0.98585 0.87657 0.92032 0.88524 0.92400 0.91182 0.89664 0.90054 0.92010 0.91381 0.91855 0.92141 0.92437 0.92228 0.91967 0.92397 0.92166 0.92053 0.77391 0.85570 0.91752 0.86472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.56 101.05 1.07 1.46 16 2 O -0.37 -5.08 10.37 -39.26 -0.41 -5.49 16 3 C 0.43 6.94 7.23 36.00 0.26 7.20 16 4 O -0.49 -9.78 16.10 -18.75 -0.30 -10.09 16 5 C 0.18 2.50 2.06 -69.08 -0.14 2.35 16 6 H 0.11 1.64 4.73 -51.93 -0.25 1.39 16 7 C -0.11 -1.17 4.19 -26.73 -0.11 -1.28 16 8 C -0.08 -0.82 2.13 -90.62 -0.19 -1.01 16 9 C -0.12 -1.22 4.97 -26.73 -0.13 -1.35 16 10 C -0.12 -1.22 5.92 -26.72 -0.16 -1.38 16 11 C -0.12 -1.02 5.92 -26.73 -0.16 -1.18 16 12 C -0.12 -0.99 5.92 -26.74 -0.16 -1.15 16 13 C -0.11 -0.93 5.20 -26.74 -0.14 -1.07 16 14 N -0.72 -11.64 4.11 -52.89 -0.22 -11.86 16 15 C -0.04 -0.85 6.60 -83.32 -0.55 -1.40 16 16 C 0.11 2.58 11.20 -16.93 -0.19 2.39 16 17 N -0.57 -15.26 10.34 -12.48 -0.13 -15.38 16 18 C 0.37 10.76 7.35 -158.22 -1.16 9.60 16 19 C -0.41 -11.71 9.35 -37.80 -0.35 -12.06 16 20 H 0.09 2.45 7.86 -52.49 -0.41 2.03 16 21 C 0.07 1.81 5.49 -17.35 -0.10 1.72 16 22 N -0.72 -19.67 11.44 55.55 0.64 -19.04 16 23 Si 0.91 19.25 29.56 -169.99 -5.03 14.23 16 24 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 25 H -0.28 -5.67 7.11 56.52 0.40 -5.26 16 26 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 27 N -0.48 -13.40 7.87 -12.49 -0.10 -13.50 16 28 C 0.11 2.56 10.43 -16.94 -0.18 2.38 16 29 H 0.06 0.77 8.13 -51.93 -0.42 0.35 16 30 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.06 0.63 8.13 -51.93 -0.42 0.21 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.08 0.79 7.99 -51.93 -0.42 0.38 16 34 H 0.08 0.92 7.62 -51.93 -0.40 0.53 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.84 6.46 -51.93 -0.34 0.50 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 43 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.39 5.60 8.63 -40.82 -0.35 5.25 16 46 H 0.13 2.44 8.06 -52.48 -0.42 2.02 16 47 H 0.27 6.65 8.29 -40.82 -0.34 6.31 16 48 H 0.12 2.58 6.35 -52.48 -0.33 2.25 16 LS Contribution 387.46 15.07 5.84 5.84 Total: -1.00 -33.08 387.46 -9.64 -42.72 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: -7.54 Total: 7.34 kcal Atomic # 6 Polarization: 7.62 SS G_CDS: -2.39 Total: 5.23 kcal Atomic # 7 Polarization: -59.97 SS G_CDS: 0.19 Total: -59.78 kcal Atomic # 8 Polarization: -14.86 SS G_CDS: -0.71 Total: -15.57 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -5.03 Total: 14.23 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.08 -9.64 -42.72 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169164133.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.879 kcal (2) G-P(sol) polarization free energy of solvation -33.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds