Wall clock time and date at job start Tue Mar 31 2020 18:00:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34231 * 117.00401 * 2 1 4 4 O 1.20826 * 119.99522 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00508 * 179.97438 * 3 2 1 6 6 H 1.09004 * 109.47186 * 59.99206 * 5 3 2 7 7 C 1.53001 * 109.47110 * 299.99863 * 5 3 2 8 8 C 1.52995 * 109.47311 * 175.00160 * 7 5 3 9 9 C 1.53002 * 109.46710 * 294.99536 * 8 7 5 10 10 C 1.53006 * 109.46934 * 179.97438 * 9 8 7 11 11 C 1.53008 * 109.46901 * 60.00280 * 10 9 8 12 12 C 1.52999 * 109.46909 * 300.00133 * 11 10 9 13 13 C 1.52993 * 109.47556 * 59.99762 * 12 11 10 14 14 N 1.46498 * 109.47310 * 179.97438 * 5 3 2 15 15 C 1.38797 * 120.00294 * 274.99857 * 14 5 3 16 16 C 1.40083 * 120.76045 * 179.97438 * 15 14 5 17 17 N 1.31664 * 119.13968 * 179.97438 * 16 15 14 18 18 C 1.33602 * 120.79054 * 0.02562 * 17 16 15 19 19 C 1.41148 * 119.17123 * 179.97438 * 18 17 16 20 20 H 1.07999 * 119.99497 * 353.61297 * 19 18 17 21 21 C 1.40040 * 119.99816 * 173.61365 * 19 18 17 22 22 N 1.30725 * 120.00081 * 6.33361 * 21 19 18 23 23 Si 1.86803 * 119.99808 * 186.33114 * 21 19 18 24 24 H 1.48502 * 109.46780 * 94.98840 * 23 21 19 25 25 H 1.48500 * 109.47295 * 214.98967 * 23 21 19 26 26 H 1.48496 * 109.47200 * 334.98918 * 23 21 19 27 27 N 1.33604 * 121.65433 * 359.97438 * 18 17 16 28 28 C 1.31651 * 120.79247 * 359.97438 * 27 18 17 29 29 H 1.09001 * 109.46940 * 60.00277 * 1 2 3 30 30 H 1.08997 * 109.47048 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46904 * 300.00277 * 1 2 3 32 32 H 1.09005 * 109.46524 * 294.99689 * 7 5 3 33 33 H 1.08999 * 109.47270 * 54.99288 * 7 5 3 34 34 H 1.09005 * 109.47167 * 54.99484 * 8 7 5 35 35 H 1.08991 * 109.47340 * 300.00025 * 9 8 7 36 36 H 1.09000 * 109.46921 * 60.00599 * 9 8 7 37 37 H 1.08999 * 109.47336 * 300.00615 * 10 9 8 38 38 H 1.09000 * 109.46892 * 180.02562 * 10 9 8 39 39 H 1.08993 * 109.47019 * 180.02562 * 11 10 9 40 40 H 1.09000 * 109.46615 * 59.99544 * 11 10 9 41 41 H 1.09006 * 109.46653 * 299.99449 * 12 11 10 42 42 H 1.09006 * 109.46780 * 180.02562 * 12 11 10 43 43 H 1.09005 * 109.47450 * 180.02562 * 13 12 11 44 44 H 1.09005 * 109.46872 * 60.00111 * 13 12 11 45 45 H 0.97000 * 120.00050 * 95.00026 * 14 5 3 46 46 H 1.08005 * 120.43274 * 359.96390 * 16 15 14 47 47 H 0.97003 * 119.99655 * 179.97438 * 22 21 19 48 48 H 1.08006 * 120.42831 * 180.02562 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9565 0.7804 -0.8891 7 6 4.1129 0.5816 1.2502 8 6 5.6414 0.5518 1.1896 9 6 6.0882 -0.3206 0.0147 10 6 7.6167 -0.3499 -0.0463 11 6 8.1682 -0.9295 1.2580 12 6 7.7212 -0.0573 2.4328 13 6 6.1928 -0.0278 2.4938 14 7 3.9817 2.6797 -0.0002 15 6 4.0786 3.3742 -1.1980 16 6 4.4737 4.7180 -1.2171 17 7 4.5554 5.3459 -2.3715 18 6 4.2664 4.7168 -3.5141 19 6 4.3649 5.4230 -4.7323 20 1 4.5697 6.4834 -4.7266 21 6 4.1971 4.7487 -5.9481 22 7 3.8277 3.4947 -5.9545 23 14 4.5011 5.6411 -7.5608 24 1 5.8909 5.3821 -8.0154 25 1 3.5453 5.1504 -8.5859 26 1 4.3088 7.1002 -7.3630 27 7 3.8865 3.4361 -3.5327 28 6 3.7845 2.7471 -2.4156 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 3.7951 1.1290 2.1377 33 1 3.7311 -0.4383 1.2963 34 1 6.0195 1.5651 1.0542 35 1 5.7101 -1.3338 0.1501 36 1 5.6958 0.0927 -0.9144 37 1 7.9945 0.6635 -0.1818 38 1 7.9350 -0.9710 -0.8836 39 1 9.2570 -0.9500 1.2147 40 1 7.7903 -1.9429 1.3935 41 1 8.0991 0.9562 2.2972 42 1 8.1145 -0.4700 3.3619 43 1 5.8744 0.5940 3.3305 44 1 5.8150 -1.0413 2.6294 45 1 4.1891 3.1246 0.8365 46 1 4.7082 5.2325 -0.2968 47 1 3.7111 3.0278 -6.7967 48 1 3.4772 1.7119 -2.4375 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169164133.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:32 Heat of formation + Delta-G solvation = -76.017390 kcal Electronic energy + Delta-G solvation = -29425.560942 eV Core-core repulsion = 25478.955419 eV Total energy + Delta-G solvation = -3946.605522 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.76764 -40.78159 -39.72221 -37.84302 -36.91705 -35.45823 -33.83486 -33.67494 -31.60226 -31.17538 -29.88395 -28.32461 -26.89182 -25.78993 -24.54634 -23.46388 -23.32765 -22.11983 -21.31463 -20.49275 -19.75918 -18.78936 -18.28569 -17.88495 -17.49293 -17.10594 -16.96460 -16.18438 -16.10231 -15.68142 -15.23698 -15.08723 -14.97192 -14.85468 -14.51284 -14.49390 -14.32223 -13.92583 -13.36815 -13.19952 -13.12252 -13.00505 -12.96834 -12.88454 -12.73895 -12.54959 -12.20114 -12.06963 -11.92832 -11.91455 -11.80963 -11.71930 -11.41665 -11.31793 -11.23174 -11.16697 -10.88841 -10.76632 -10.72626 -9.25781 -8.61911 -8.34287 -6.37306 0.81497 0.99328 1.17449 1.41698 1.51036 1.57366 1.74651 2.25973 2.66503 2.83426 3.55615 3.76202 3.81226 3.88449 3.94736 4.00391 4.06662 4.08656 4.16083 4.28789 4.29886 4.31664 4.36026 4.47693 4.58284 4.61515 4.67712 4.68493 4.70188 4.73145 4.86420 4.90686 5.03692 5.11313 5.13564 5.24326 5.29761 5.33929 5.35621 5.38091 5.40170 5.47803 5.49257 5.55287 5.70208 6.21356 6.32762 6.55573 6.75628 6.78676 6.94843 7.27750 8.26816 8.48898 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.010459 B = 0.003570 C = 0.003008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2676.588854 B = 7840.169439 C = 9305.903168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.360 6.360 3 C 0.433 3.567 4 O -0.533 6.533 5 C 0.175 3.825 6 H 0.108 0.892 7 C -0.102 4.102 8 C -0.078 4.078 9 C -0.117 4.117 10 C -0.121 4.121 11 C -0.115 4.115 12 C -0.119 4.119 13 C -0.107 4.107 14 N -0.704 5.704 15 C -0.002 4.002 16 C 0.094 3.906 17 N -0.587 5.587 18 C 0.340 3.660 19 C -0.457 4.457 20 H 0.082 0.918 21 C 0.027 3.973 22 N -0.763 5.763 23 Si 0.995 3.005 24 H -0.261 1.261 25 H -0.264 1.264 26 H -0.259 1.259 27 N -0.506 5.506 28 C 0.081 3.919 29 H 0.045 0.955 30 H 0.137 0.863 31 H 0.062 0.938 32 H 0.084 0.916 33 H 0.105 0.895 34 H 0.064 0.936 35 H 0.076 0.924 36 H 0.042 0.958 37 H 0.044 0.956 38 H 0.057 0.943 39 H 0.060 0.940 40 H 0.070 0.930 41 H 0.051 0.949 42 H 0.072 0.928 43 H 0.070 0.930 44 H 0.074 0.926 45 H 0.406 0.594 46 H 0.165 0.835 47 H 0.279 0.721 48 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.641 -14.393 16.055 21.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.275 6.275 3 C 0.274 3.726 4 O -0.421 6.421 5 C 0.065 3.935 6 H 0.125 0.875 7 C -0.139 4.139 8 C -0.096 4.096 9 C -0.155 4.155 10 C -0.159 4.159 11 C -0.153 4.153 12 C -0.157 4.157 13 C -0.145 4.145 14 N -0.340 5.340 15 C -0.108 4.108 16 C -0.079 4.079 17 N -0.306 5.306 18 C 0.097 3.903 19 C -0.494 4.494 20 H 0.101 0.899 21 C -0.195 4.195 22 N -0.388 5.388 23 Si 0.814 3.186 24 H -0.186 1.186 25 H -0.189 1.189 26 H -0.182 1.182 27 N -0.223 5.223 28 C -0.095 4.095 29 H 0.063 0.937 30 H 0.155 0.845 31 H 0.081 0.919 32 H 0.103 0.897 33 H 0.123 0.877 34 H 0.083 0.917 35 H 0.095 0.905 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.076 0.924 39 H 0.079 0.921 40 H 0.088 0.912 41 H 0.070 0.930 42 H 0.091 0.909 43 H 0.088 0.912 44 H 0.092 0.908 45 H 0.243 0.757 46 H 0.182 0.818 47 H 0.090 0.910 48 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 2.370 -13.916 14.953 20.564 hybrid contribution -0.466 0.364 0.128 0.605 sum 1.904 -13.552 15.081 20.365 Atomic orbital electron populations 1.23485 0.75651 1.05611 1.01824 1.86510 1.24356 1.32870 1.83791 1.25736 0.94179 0.81278 0.71400 1.90667 1.67772 1.37859 1.45846 1.20542 0.84236 0.84955 1.03758 0.87455 1.21836 0.96292 1.01829 0.93981 1.21071 0.92975 0.99781 0.95817 1.21633 0.95704 1.00480 0.97636 1.21516 0.95774 1.00408 0.98210 1.21514 1.00143 0.99548 0.94051 1.21529 0.95979 0.99782 0.98394 1.21538 0.95180 1.01743 0.96021 1.43282 1.76262 1.09522 1.04912 1.19038 1.08973 0.94466 0.88326 1.22792 0.98230 0.90253 0.96663 1.68555 1.23328 1.39645 0.99075 1.20119 0.91556 0.86960 0.91643 1.19371 1.44599 0.96388 0.89084 0.89947 1.26913 0.92652 0.95657 1.04232 1.70227 1.28913 1.10735 1.28901 0.85021 0.79102 0.79113 0.75320 1.18602 1.18886 1.18227 1.69167 1.17075 1.08556 1.27551 1.22850 0.99279 0.99276 0.88062 0.93658 0.84500 0.91898 0.89749 0.87690 0.91745 0.90491 0.93903 0.93727 0.92412 0.92118 0.91173 0.92974 0.90913 0.91150 0.90775 0.75739 0.81806 0.91038 0.85088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 10.56 113.37 1.20 1.77 16 2 O -0.36 -9.23 10.37 -51.43 -0.53 -9.76 16 3 C 0.43 13.43 7.23 71.23 0.52 13.94 16 4 O -0.53 -21.09 16.10 21.96 0.35 -20.74 16 5 C 0.18 4.66 2.06 44.24 0.09 4.75 16 6 H 0.11 3.06 4.73 -2.39 -0.01 3.05 16 7 C -0.10 -1.78 4.19 30.59 0.13 -1.65 16 8 C -0.08 -1.35 2.13 -10.79 -0.02 -1.38 16 9 C -0.12 -2.29 4.97 30.60 0.15 -2.14 16 10 C -0.12 -2.38 5.92 30.60 0.18 -2.20 16 11 C -0.12 -1.74 5.92 30.60 0.18 -1.56 16 12 C -0.12 -1.67 5.92 30.59 0.18 -1.49 16 13 C -0.11 -1.42 5.20 30.59 0.16 -1.26 16 14 N -0.70 -22.03 4.11 -321.25 -1.32 -23.35 16 15 C 0.00 -0.10 6.60 38.94 0.26 0.16 16 16 C 0.09 4.34 11.20 85.17 0.95 5.29 16 17 N -0.59 -32.60 10.34 -193.41 -2.00 -34.60 16 18 C 0.34 20.55 7.35 134.95 0.99 21.54 16 19 C -0.46 -27.15 9.35 23.42 0.22 -26.93 16 20 H 0.08 4.77 7.86 -2.91 -0.02 4.74 16 21 C 0.03 1.44 5.49 85.29 0.47 1.91 16 22 N -0.76 -42.91 11.44 21.84 0.25 -42.66 16 23 Si 0.99 40.45 29.56 68.60 2.03 42.48 16 24 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 25 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 26 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 27 N -0.51 -29.73 7.87 -193.42 -1.52 -31.25 16 28 C 0.08 3.99 10.43 85.17 0.89 4.88 16 29 H 0.04 1.10 8.13 -2.39 -0.02 1.08 16 30 H 0.14 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.06 1.26 8.13 -2.39 -0.02 1.24 16 32 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 33 H 0.10 1.53 7.99 -2.39 -0.02 1.51 16 34 H 0.06 1.36 7.62 -2.38 -0.02 1.34 16 35 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.04 1.05 6.46 -2.39 -0.02 1.03 16 37 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 42 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 43 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 44 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 45 H 0.41 10.74 8.63 -92.71 -0.80 9.94 16 46 H 0.16 6.10 8.06 -2.91 -0.02 6.08 16 47 H 0.28 14.06 8.29 -92.71 -0.77 13.29 16 48 H 0.13 5.93 6.35 -2.91 -0.02 5.91 16 Total: -1.00 -75.99 387.46 3.97 -72.03 By element: Atomic # 1 Polarization: 32.04 SS G_CDS: 0.17 Total: 32.21 kcal Atomic # 6 Polarization: 9.09 SS G_CDS: 6.54 Total: 15.63 kcal Atomic # 7 Polarization: -127.26 SS G_CDS: -4.59 Total: -131.85 kcal Atomic # 8 Polarization: -30.32 SS G_CDS: -0.18 Total: -30.50 kcal Atomic # 14 Polarization: 40.45 SS G_CDS: 2.03 Total: 42.48 kcal Total: -75.99 3.97 -72.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169164133.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.990 kcal (2) G-P(sol) polarization free energy of solvation -75.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds