Wall clock time and date at job start Tue Mar 31 2020 17:26:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35676 * 117.00066 * 2 1 4 4 C 1.38918 * 119.68072 * 180.02562 * 3 2 1 5 5 C 1.38382 * 119.10890 * 179.97438 * 4 3 2 6 6 C 1.38832 * 118.48396 * 359.73410 * 5 4 3 7 7 C 1.38051 * 119.28718 * 0.53462 * 6 5 4 8 8 C 1.50698 * 119.57863 * 179.73237 * 7 6 5 9 9 C 1.53006 * 109.47184 * 124.72592 * 8 7 6 10 10 C 1.50698 * 109.47184 * 180.02562 * 9 8 7 11 11 O 1.21282 * 120.00025 * 359.97438 * 10 9 8 12 12 N 1.34776 * 120.00035 * 180.02562 * 10 9 8 13 13 C 1.47078 * 120.87972 * 359.71553 * 12 10 9 14 14 C 1.53696 * 108.27428 * 128.75756 * 13 12 10 15 15 N 1.46901 * 109.25578 * 54.08353 * 14 13 12 16 16 C 1.46897 * 110.99859 * 172.60652 * 15 14 13 17 17 C 1.50703 * 109.47205 * 294.30004 * 16 15 14 18 18 H 1.08001 * 119.99881 * 0.02562 * 17 16 15 19 19 C 1.37885 * 119.99996 * 179.97438 * 17 16 15 20 20 N 1.31509 * 119.99716 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99699 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47123 * 90.00312 * 21 19 17 23 23 H 1.48505 * 109.46544 * 210.00068 * 21 19 17 24 24 H 1.48498 * 109.47378 * 329.99692 * 21 19 17 25 25 C 1.46899 * 111.26941 * 296.75437 * 15 14 13 26 26 C 1.47079 * 120.88234 * 179.97438 * 12 10 9 27 27 N 1.31961 * 120.83650 * 359.45006 * 7 6 5 28 28 H 1.09005 * 109.46667 * 299.99957 * 1 2 3 29 29 H 1.08994 * 109.46927 * 59.99726 * 1 2 3 30 30 H 1.08999 * 109.47246 * 180.02562 * 1 2 3 31 31 H 1.07998 * 120.44834 * 359.95585 * 4 3 2 32 32 H 1.07994 * 120.75801 * 180.02562 * 5 4 3 33 33 H 1.08000 * 120.35712 * 180.25549 * 6 5 4 34 34 H 1.09001 * 109.47612 * 4.72647 * 8 7 6 35 35 H 1.09001 * 109.47122 * 244.72478 * 8 7 6 36 36 H 1.09001 * 109.47002 * 299.99404 * 9 8 7 37 37 H 1.08993 * 109.46955 * 59.99842 * 9 8 7 38 38 H 1.09000 * 109.62637 * 248.51962 * 13 12 10 39 39 H 1.08996 * 109.62945 * 9.10502 * 13 12 10 40 40 H 1.08996 * 109.65240 * 294.07941 * 14 13 12 41 41 H 1.08998 * 109.41933 * 173.94550 * 14 13 12 42 42 H 1.09007 * 109.47530 * 54.29967 * 16 15 14 43 43 H 1.09007 * 109.47468 * 174.29901 * 16 15 14 44 44 H 0.97001 * 119.99623 * 180.02562 * 20 19 17 45 45 H 1.09003 * 109.49277 * 303.14395 * 25 15 14 46 46 H 1.08998 * 109.48979 * 183.06806 * 25 15 14 47 47 H 1.09004 * 109.62660 * 350.89373 * 26 12 10 48 48 H 1.09000 * 109.63135 * 111.46841 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4327 1.2738 -0.0005 5 6 4.0486 2.5130 -0.0011 6 6 3.2506 3.6490 -0.0067 7 6 1.8771 3.5096 -0.0003 8 6 1.0047 4.7383 -0.0003 9 6 0.0342 4.6748 -1.1815 10 6 -0.8378 5.9039 -1.1818 11 8 -0.6974 6.7473 -0.3217 12 7 -1.7745 6.0653 -2.1373 13 6 -1.9580 5.0573 -3.1925 14 6 -3.4481 4.6850 -3.2495 15 7 -4.2468 5.9071 -3.4131 16 6 -5.6606 5.5845 -3.6476 17 6 -5.8014 4.8756 -4.9701 18 1 -4.9280 4.6836 -5.5755 19 6 -7.0453 4.4713 -5.4065 20 7 -8.1088 4.7048 -4.6690 21 14 -7.2197 3.5921 -7.0454 22 1 -7.0910 2.1275 -6.8375 23 1 -8.5511 3.8941 -7.6298 24 1 -6.1558 4.0561 -7.9718 25 6 -4.0956 6.8012 -2.2574 26 6 -2.6365 7.2569 -2.1558 27 7 1.3186 2.3140 0.0001 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 4.0229 0.3694 -0.0002 32 1 5.1255 2.5945 -0.0019 33 1 3.6994 4.6314 -0.0114 34 1 1.6289 5.6273 -0.0904 35 1 0.4406 4.7834 0.9313 36 1 0.5983 4.6299 -2.1131 37 1 -0.5900 3.7860 -1.0915 38 1 -1.6435 5.4694 -4.1513 39 1 -1.3667 4.1717 -2.9597 40 1 -3.7362 4.1832 -2.3259 41 1 -3.6235 4.0201 -4.0952 42 1 -6.0233 4.9379 -2.8484 43 1 -6.2453 6.5043 -3.6643 44 1 -8.9838 4.4200 -4.9759 45 1 -4.3746 6.2698 -1.3475 46 1 -4.7405 7.6708 -2.3835 47 1 -2.4939 7.8262 -1.2373 48 1 -2.3860 7.8768 -3.0167 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001175332309.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:26:56 Heat of formation + Delta-G solvation = -31.227829 kcal Electronic energy + Delta-G solvation = -28329.775320 eV Core-core repulsion = 24385.112018 eV Total energy + Delta-G solvation = -3944.663301 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.97400 -39.97663 -38.31811 -37.53906 -34.40359 -34.23700 -32.50519 -32.32283 -31.04290 -30.08797 -28.31444 -27.53398 -25.92136 -24.82475 -23.27194 -23.23379 -22.31957 -21.66503 -20.39872 -18.64721 -18.38967 -17.26035 -16.72841 -16.40998 -16.29091 -16.27113 -15.73555 -15.67136 -14.81865 -14.62389 -14.44318 -14.28813 -14.07555 -13.96451 -13.65809 -13.64052 -13.33699 -12.99056 -12.61433 -12.42980 -12.34598 -12.11410 -11.90237 -11.86516 -11.46852 -11.30787 -11.18769 -11.06324 -10.96866 -10.76552 -10.64403 -10.55000 -10.16094 -9.91623 -9.88117 -9.62029 -9.29831 -8.71998 -8.52786 -8.43642 -7.35031 -6.08571 -4.10720 0.82247 0.99268 2.72759 2.83171 3.10761 3.27401 3.34306 3.37893 3.46614 3.85999 4.34512 4.36863 4.64592 4.72195 4.76828 4.81739 4.94549 4.96384 4.99202 5.08411 5.12816 5.24894 5.27719 5.34835 5.38590 5.44494 5.48938 5.53076 5.63671 5.64847 5.75656 5.78078 5.87391 5.89992 5.92634 6.03201 6.13926 6.27195 6.43351 6.45012 6.68009 6.96325 7.19759 7.25619 7.55424 7.60100 7.72026 7.99169 8.09740 8.26791 8.45014 8.96433 9.53883 11.02243 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012661 B = 0.002551 C = 0.002228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2211.037052 B =10975.349014 C =12563.180088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.310 6.310 3 C 0.325 3.675 4 C -0.199 4.199 5 C -0.039 4.039 6 C -0.208 4.208 7 C 0.174 3.826 8 C -0.054 4.054 9 C -0.130 4.130 10 C 0.514 3.486 11 O -0.554 6.554 12 N -0.608 5.608 13 C 0.108 3.892 14 C 0.050 3.950 15 N -0.536 5.536 16 C 0.194 3.806 17 C -0.510 4.510 18 H 0.064 0.936 19 C 0.056 3.944 20 N -0.897 5.897 21 Si 0.898 3.102 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.272 1.272 25 C 0.041 3.959 26 C 0.118 3.882 27 N -0.536 5.536 28 H 0.059 0.941 29 H 0.062 0.938 30 H 0.096 0.904 31 H 0.140 0.860 32 H 0.141 0.859 33 H 0.138 0.862 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.102 0.898 38 H 0.076 0.924 39 H 0.080 0.920 40 H 0.025 0.975 41 H 0.097 0.903 42 H -0.009 1.009 43 H 0.032 0.968 44 H 0.262 0.738 45 H 0.026 0.974 46 H 0.081 0.919 47 H 0.087 0.913 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.872 -4.914 9.219 25.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.217 6.217 3 C 0.145 3.855 4 C -0.220 4.220 5 C -0.064 4.064 6 C -0.228 4.228 7 C 0.038 3.962 8 C -0.092 4.092 9 C -0.170 4.170 10 C 0.303 3.697 11 O -0.433 6.433 12 N -0.341 5.341 13 C -0.015 4.015 14 C -0.079 4.079 15 N -0.261 5.261 16 C 0.069 3.931 17 C -0.548 4.548 18 H 0.082 0.918 19 C -0.146 4.146 20 N -0.537 5.537 21 Si 0.726 3.274 22 H -0.207 1.207 23 H -0.212 1.212 24 H -0.197 1.197 25 C -0.088 4.088 26 C -0.005 4.005 27 N -0.260 5.260 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.115 0.885 31 H 0.157 0.843 32 H 0.159 0.841 33 H 0.156 0.844 34 H 0.108 0.892 35 H 0.110 0.890 36 H 0.109 0.891 37 H 0.120 0.880 38 H 0.094 0.906 39 H 0.098 0.902 40 H 0.043 0.957 41 H 0.115 0.885 42 H 0.009 0.991 43 H 0.050 0.950 44 H 0.072 0.928 45 H 0.044 0.956 46 H 0.099 0.901 47 H 0.106 0.894 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 22.092 -4.599 9.254 24.389 hybrid contribution -0.055 -0.899 -0.267 0.939 sum 22.037 -5.498 8.986 24.425 Atomic orbital electron populations 1.22898 0.76788 1.03126 1.02802 1.86237 1.23249 1.24486 1.87679 1.19836 0.89368 0.84663 0.91593 1.21050 0.92081 0.99635 1.09210 1.21400 1.00540 0.91210 0.93276 1.21849 0.93992 1.00087 1.06892 1.20939 0.91901 0.91567 0.91801 1.20328 0.96482 0.92784 0.99584 1.21563 0.97931 0.97519 0.99983 1.20595 0.80518 0.87851 0.80767 1.90661 1.70088 1.45002 1.37538 1.48246 1.35174 1.22793 1.27869 1.22122 0.97896 0.90808 0.90630 1.22406 0.90922 0.93384 1.01178 1.62077 1.13462 1.14496 1.36080 1.19728 0.81011 0.96165 0.96212 1.21133 0.93186 1.36646 1.03880 0.91812 1.24999 0.95804 0.96246 0.97541 1.69956 0.98708 1.47134 1.37865 0.86497 0.77492 0.79713 0.83718 1.20729 1.21238 1.19727 1.22397 0.95199 0.98216 0.93032 1.21737 0.89302 0.86866 1.02568 1.67093 1.41002 0.98341 1.19556 0.92185 0.91953 0.88547 0.84255 0.84123 0.84405 0.89176 0.88987 0.89089 0.87983 0.90563 0.90154 0.95655 0.88514 0.99129 0.95016 0.92850 0.95566 0.90083 0.89424 0.90999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.34 10.38 101.05 1.05 1.39 16 2 O -0.31 -3.30 10.48 -18.73 -0.20 -3.50 16 3 C 0.32 3.52 7.49 -17.12 -0.13 3.39 16 4 C -0.20 -1.71 10.04 -39.28 -0.39 -2.11 16 5 C -0.04 -0.28 10.17 -39.31 -0.40 -0.68 16 6 C -0.21 -1.69 9.71 -39.43 -0.38 -2.07 16 7 C 0.17 1.76 6.17 -82.61 -0.51 1.25 16 8 C -0.05 -0.55 4.90 -27.88 -0.14 -0.68 16 9 C -0.13 -1.42 3.92 -27.88 -0.11 -1.53 16 10 C 0.51 7.36 7.71 -10.99 -0.08 7.28 16 11 O -0.55 -9.43 15.43 5.56 0.09 -9.35 16 12 N -0.61 -9.00 3.00 -172.21 -0.52 -9.52 16 13 C 0.11 1.51 6.53 -3.36 -0.02 1.49 16 14 C 0.05 0.90 5.47 -3.46 -0.02 0.88 16 15 N -0.54 -11.04 4.62 -235.49 -1.09 -12.13 16 16 C 0.19 4.89 4.72 -4.98 -0.02 4.87 16 17 C -0.51 -13.78 8.41 -34.44 -0.29 -14.07 16 18 H 0.06 1.68 7.13 -52.49 -0.37 1.31 16 19 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 20 N -0.90 -26.18 13.29 55.43 0.74 -25.45 16 21 Si 0.90 21.03 29.54 -169.99 -5.02 16.01 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 23 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 24 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 25 C 0.04 0.73 5.62 -3.72 -0.02 0.71 16 26 C 0.12 1.83 6.59 -3.63 -0.02 1.80 16 27 N -0.54 -6.07 8.73 -9.55 -0.08 -6.15 16 28 H 0.06 0.54 8.10 -51.93 -0.42 0.12 16 29 H 0.06 0.57 8.10 -51.93 -0.42 0.15 16 30 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.14 0.94 8.06 -52.49 -0.42 0.51 16 32 H 0.14 0.58 8.06 -52.49 -0.42 0.16 16 33 H 0.14 0.83 7.94 -52.49 -0.42 0.41 16 34 H 0.09 0.85 7.82 -51.93 -0.41 0.44 16 35 H 0.09 1.04 8.10 -51.93 -0.42 0.62 16 36 H 0.09 0.87 7.99 -51.93 -0.41 0.46 16 37 H 0.10 1.14 7.47 -51.93 -0.39 0.76 16 38 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 39 H 0.08 0.91 6.02 -51.93 -0.31 0.60 16 40 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.10 1.84 6.67 -51.93 -0.35 1.49 16 42 H -0.01 -0.25 8.13 -51.92 -0.42 -0.67 16 43 H 0.03 0.86 7.97 -51.92 -0.41 0.45 16 44 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 45 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.08 1.41 7.99 -51.93 -0.41 0.99 16 47 H 0.09 1.35 7.06 -51.93 -0.37 0.98 16 48 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 LS Contribution 391.33 15.07 5.90 5.90 Total: -1.00 -32.39 391.33 -9.41 -41.80 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: -7.63 Total: -0.98 kcal Atomic # 6 Polarization: 4.95 SS G_CDS: -1.59 Total: 3.36 kcal Atomic # 7 Polarization: -52.29 SS G_CDS: -0.95 Total: -53.24 kcal Atomic # 8 Polarization: -12.73 SS G_CDS: -0.11 Total: -12.84 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.39 -9.41 -41.80 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175332309.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.570 kcal (2) G-P(sol) polarization free energy of solvation -32.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds