Wall clock time and date at job start Tue Mar 31 2020 17:26:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35676 * 117.00066 * 2 1 4 4 C 1.38918 * 119.68072 * 180.02562 * 3 2 1 5 5 C 1.38382 * 119.10890 * 179.97438 * 4 3 2 6 6 C 1.38832 * 118.48396 * 359.73410 * 5 4 3 7 7 C 1.38051 * 119.28718 * 0.53462 * 6 5 4 8 8 C 1.50698 * 119.57863 * 179.73237 * 7 6 5 9 9 C 1.53006 * 109.47184 * 124.72592 * 8 7 6 10 10 C 1.50698 * 109.47184 * 180.02562 * 9 8 7 11 11 O 1.21282 * 120.00025 * 359.97438 * 10 9 8 12 12 N 1.34776 * 120.00035 * 180.02562 * 10 9 8 13 13 C 1.47078 * 120.87972 * 359.71553 * 12 10 9 14 14 C 1.53696 * 108.27428 * 128.75756 * 13 12 10 15 15 N 1.46901 * 109.25578 * 54.08353 * 14 13 12 16 16 C 1.46897 * 110.99859 * 172.60652 * 15 14 13 17 17 C 1.50703 * 109.47205 * 294.30004 * 16 15 14 18 18 H 1.08001 * 119.99881 * 0.02562 * 17 16 15 19 19 C 1.37885 * 119.99996 * 179.97438 * 17 16 15 20 20 N 1.31509 * 119.99716 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99699 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47123 * 90.00312 * 21 19 17 23 23 H 1.48505 * 109.46544 * 210.00068 * 21 19 17 24 24 H 1.48498 * 109.47378 * 329.99692 * 21 19 17 25 25 C 1.46899 * 111.26941 * 296.75437 * 15 14 13 26 26 C 1.47079 * 120.88234 * 179.97438 * 12 10 9 27 27 N 1.31961 * 120.83650 * 359.45006 * 7 6 5 28 28 H 1.09005 * 109.46667 * 299.99957 * 1 2 3 29 29 H 1.08994 * 109.46927 * 59.99726 * 1 2 3 30 30 H 1.08999 * 109.47246 * 180.02562 * 1 2 3 31 31 H 1.07998 * 120.44834 * 359.95585 * 4 3 2 32 32 H 1.07994 * 120.75801 * 180.02562 * 5 4 3 33 33 H 1.08000 * 120.35712 * 180.25549 * 6 5 4 34 34 H 1.09001 * 109.47612 * 4.72647 * 8 7 6 35 35 H 1.09001 * 109.47122 * 244.72478 * 8 7 6 36 36 H 1.09001 * 109.47002 * 299.99404 * 9 8 7 37 37 H 1.08993 * 109.46955 * 59.99842 * 9 8 7 38 38 H 1.09000 * 109.62637 * 248.51962 * 13 12 10 39 39 H 1.08996 * 109.62945 * 9.10502 * 13 12 10 40 40 H 1.08996 * 109.65240 * 294.07941 * 14 13 12 41 41 H 1.08998 * 109.41933 * 173.94550 * 14 13 12 42 42 H 1.09007 * 109.47530 * 54.29967 * 16 15 14 43 43 H 1.09007 * 109.47468 * 174.29901 * 16 15 14 44 44 H 0.97001 * 119.99623 * 180.02562 * 20 19 17 45 45 H 1.09003 * 109.49277 * 303.14395 * 25 15 14 46 46 H 1.08998 * 109.48979 * 183.06806 * 25 15 14 47 47 H 1.09004 * 109.62660 * 350.89373 * 26 12 10 48 48 H 1.09000 * 109.63135 * 111.46841 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4327 1.2738 -0.0005 5 6 4.0486 2.5130 -0.0011 6 6 3.2506 3.6490 -0.0067 7 6 1.8771 3.5096 -0.0003 8 6 1.0047 4.7383 -0.0003 9 6 0.0342 4.6748 -1.1815 10 6 -0.8378 5.9039 -1.1818 11 8 -0.6974 6.7473 -0.3217 12 7 -1.7745 6.0653 -2.1373 13 6 -1.9580 5.0573 -3.1925 14 6 -3.4481 4.6850 -3.2495 15 7 -4.2468 5.9071 -3.4131 16 6 -5.6606 5.5845 -3.6476 17 6 -5.8014 4.8756 -4.9701 18 1 -4.9280 4.6836 -5.5755 19 6 -7.0453 4.4713 -5.4065 20 7 -8.1088 4.7048 -4.6690 21 14 -7.2197 3.5921 -7.0454 22 1 -7.0910 2.1275 -6.8375 23 1 -8.5511 3.8941 -7.6298 24 1 -6.1558 4.0561 -7.9718 25 6 -4.0956 6.8012 -2.2574 26 6 -2.6365 7.2569 -2.1558 27 7 1.3186 2.3140 0.0001 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 4.0229 0.3694 -0.0002 32 1 5.1255 2.5945 -0.0019 33 1 3.6994 4.6314 -0.0114 34 1 1.6289 5.6273 -0.0904 35 1 0.4406 4.7834 0.9313 36 1 0.5983 4.6299 -2.1131 37 1 -0.5900 3.7860 -1.0915 38 1 -1.6435 5.4694 -4.1513 39 1 -1.3667 4.1717 -2.9597 40 1 -3.7362 4.1832 -2.3259 41 1 -3.6235 4.0201 -4.0952 42 1 -6.0233 4.9379 -2.8484 43 1 -6.2453 6.5043 -3.6643 44 1 -8.9838 4.4200 -4.9759 45 1 -4.3746 6.2698 -1.3475 46 1 -4.7405 7.6708 -2.3835 47 1 -2.4939 7.8262 -1.2373 48 1 -2.3860 7.8768 -3.0167 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001175332309.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:26:56 Heat of formation + Delta-G solvation = -53.656577 kcal Electronic energy + Delta-G solvation = -28330.747903 eV Core-core repulsion = 24385.112018 eV Total energy + Delta-G solvation = -3945.635885 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.68945 -41.16058 -39.17446 -38.83904 -35.97326 -35.04849 -34.39181 -33.08646 -32.27872 -30.98682 -29.96078 -28.34128 -27.37632 -25.94074 -24.63288 -23.92358 -23.80357 -22.77311 -21.74630 -19.80253 -19.20026 -18.49848 -18.27772 -17.55979 -17.07654 -16.87106 -16.84321 -16.77403 -16.65275 -16.01977 -15.60693 -15.35286 -15.32424 -15.09526 -14.90855 -14.59484 -14.36945 -14.09648 -13.80704 -13.76260 -13.51356 -13.10070 -13.01395 -12.93455 -12.75161 -12.61168 -12.56581 -12.42132 -12.34642 -12.16575 -12.12937 -11.93613 -11.77194 -11.28799 -10.90167 -10.75103 -10.62641 -10.55481 -9.76889 -9.39761 -9.07924 -8.20838 -6.31328 0.15854 0.36882 1.42976 1.44386 1.55868 1.58551 1.96116 2.17966 2.40702 2.77949 3.11495 3.12657 3.21993 3.49282 3.84583 3.93868 4.02070 4.11058 4.13943 4.19365 4.22916 4.24453 4.29903 4.39289 4.42065 4.42937 4.47165 4.50269 4.65274 4.72553 4.74672 4.78943 4.84028 4.92753 4.93654 5.00764 5.08389 5.12941 5.18057 5.22285 5.29450 5.44766 5.55134 5.63245 6.01383 6.21610 6.26709 6.42384 6.54763 6.84614 6.90884 7.11003 7.38786 8.90612 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012661 B = 0.002551 C = 0.002228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2211.037052 B =10975.349014 C =12563.180088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.322 6.322 3 C 0.297 3.703 4 C -0.201 4.201 5 C -0.033 4.033 6 C -0.203 4.203 7 C 0.155 3.845 8 C -0.046 4.046 9 C -0.120 4.120 10 C 0.515 3.485 11 O -0.582 6.582 12 N -0.613 5.613 13 C 0.121 3.879 14 C 0.049 3.951 15 N -0.539 5.539 16 C 0.208 3.792 17 C -0.521 4.521 18 H 0.070 0.930 19 C 0.000 4.000 20 N -0.937 5.937 21 Si 0.971 3.029 22 H -0.272 1.272 23 H -0.286 1.286 24 H -0.261 1.261 25 C 0.043 3.957 26 C 0.127 3.873 27 N -0.557 5.557 28 H 0.051 0.949 29 H 0.055 0.945 30 H 0.118 0.882 31 H 0.156 0.844 32 H 0.177 0.823 33 H 0.161 0.839 34 H 0.100 0.900 35 H 0.073 0.927 36 H 0.113 0.887 37 H 0.100 0.900 38 H 0.088 0.912 39 H 0.113 0.887 40 H 0.013 0.987 41 H 0.086 0.914 42 H -0.042 1.042 43 H 0.004 0.996 44 H 0.264 0.736 45 H 0.013 0.987 46 H 0.081 0.919 47 H 0.090 0.910 48 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.966 -5.578 8.073 27.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.229 6.229 3 C 0.118 3.882 4 C -0.222 4.222 5 C -0.058 4.058 6 C -0.223 4.223 7 C 0.019 3.981 8 C -0.085 4.085 9 C -0.160 4.160 10 C 0.305 3.695 11 O -0.462 6.462 12 N -0.346 5.346 13 C -0.001 4.001 14 C -0.080 4.080 15 N -0.263 5.263 16 C 0.082 3.918 17 C -0.559 4.559 18 H 0.088 0.912 19 C -0.198 4.198 20 N -0.577 5.577 21 Si 0.795 3.205 22 H -0.198 1.198 23 H -0.212 1.212 24 H -0.185 1.185 25 C -0.086 4.086 26 C 0.004 3.996 27 N -0.281 5.281 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.136 0.864 31 H 0.174 0.826 32 H 0.194 0.806 33 H 0.179 0.821 34 H 0.118 0.882 35 H 0.092 0.908 36 H 0.131 0.869 37 H 0.118 0.882 38 H 0.106 0.894 39 H 0.131 0.869 40 H 0.031 0.969 41 H 0.104 0.896 42 H -0.025 1.025 43 H 0.023 0.977 44 H 0.073 0.927 45 H 0.031 0.969 46 H 0.099 0.901 47 H 0.108 0.892 48 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 25.218 -5.262 8.113 27.008 hybrid contribution -0.992 -0.666 0.176 1.207 sum 24.226 -5.928 8.289 26.282 Atomic orbital electron populations 1.22960 0.76329 1.04298 1.01993 1.86216 1.23830 1.24859 1.88001 1.20195 0.90380 0.84541 0.93058 1.21392 0.91352 1.01122 1.08294 1.21834 1.02246 0.90119 0.91559 1.22158 0.93194 1.01642 1.05329 1.20984 0.92858 0.90950 0.93303 1.20236 0.96333 0.93567 0.98329 1.21540 0.97618 0.95335 1.01501 1.21146 0.80291 0.88344 0.79724 1.90650 1.70893 1.46283 1.38417 1.48338 1.35243 1.22634 1.28340 1.22088 0.94964 0.91985 0.91084 1.22457 0.93314 0.92132 1.00074 1.62020 1.10796 1.15913 1.37603 1.19377 0.83578 0.93938 0.94893 1.21453 0.93546 1.36538 1.04366 0.91169 1.25953 0.95408 0.96996 1.01454 1.70098 0.99299 1.48396 1.39943 0.85353 0.77555 0.78623 0.78926 1.19778 1.21161 1.18494 1.22435 0.97357 0.97475 0.91363 1.21585 0.87475 0.87362 1.03165 1.66997 1.41971 0.98945 1.20236 0.93038 0.92668 0.86423 0.82616 0.80552 0.82090 0.88184 0.90806 0.86873 0.88154 0.89374 0.86917 0.96859 0.89556 1.02472 0.97742 0.92740 0.96911 0.90094 0.89187 0.89890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.68 10.38 113.37 1.18 1.86 16 2 O -0.32 -6.72 10.48 -89.94 -0.94 -7.66 16 3 C 0.30 6.16 7.49 84.79 0.63 6.80 16 4 C -0.20 -3.03 10.04 22.47 0.23 -2.80 16 5 C -0.03 -0.36 10.17 22.45 0.23 -0.13 16 6 C -0.20 -2.70 9.71 22.37 0.22 -2.48 16 7 C 0.15 2.88 6.17 42.49 0.26 3.14 16 8 C -0.05 -0.89 4.90 29.85 0.15 -0.74 16 9 C -0.12 -2.41 3.92 29.85 0.12 -2.30 16 10 C 0.51 14.00 7.71 87.66 0.68 14.67 16 11 O -0.58 -19.29 15.43 -3.04 -0.05 -19.34 16 12 N -0.61 -17.26 3.00 -817.14 -2.45 -19.72 16 13 C 0.12 3.15 6.53 86.50 0.57 3.71 16 14 C 0.05 1.76 5.47 86.54 0.47 2.23 16 15 N -0.54 -22.56 4.62 -898.96 -4.15 -26.71 16 16 C 0.21 10.97 4.72 85.56 0.40 11.37 16 17 C -0.52 -28.55 8.41 25.60 0.22 -28.34 16 18 H 0.07 3.68 7.13 -2.91 -0.02 3.66 16 19 C 0.00 -0.01 5.46 84.66 0.46 0.45 16 20 N -0.94 -55.99 13.29 21.45 0.28 -55.70 16 21 Si 0.97 43.08 29.54 68.60 2.03 45.10 16 22 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 23 H -0.29 -12.58 7.11 99.48 0.71 -11.87 16 24 H -0.26 -11.00 7.11 99.48 0.71 -10.30 16 25 C 0.04 1.56 5.62 86.37 0.49 2.05 16 26 C 0.13 3.84 6.59 86.33 0.57 4.41 16 27 N -0.56 -12.18 8.73 -296.99 -2.59 -14.77 16 28 H 0.05 0.96 8.10 -2.38 -0.02 0.94 16 29 H 0.05 1.01 8.10 -2.39 -0.02 0.99 16 30 H 0.12 1.44 8.14 -2.39 -0.02 1.43 16 31 H 0.16 1.72 8.06 -2.91 -0.02 1.69 16 32 H 0.18 0.63 8.06 -2.91 -0.02 0.60 16 33 H 0.16 1.33 7.94 -2.91 -0.02 1.30 16 34 H 0.10 1.68 7.82 -2.39 -0.02 1.67 16 35 H 0.07 1.66 8.10 -2.39 -0.02 1.65 16 36 H 0.11 1.81 7.99 -2.39 -0.02 1.79 16 37 H 0.10 2.11 7.47 -2.39 -0.02 2.09 16 38 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 39 H 0.11 2.23 6.02 -2.39 -0.01 2.22 16 40 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 41 H 0.09 3.27 6.67 -2.39 -0.02 3.25 16 42 H -0.04 -2.47 8.13 -2.38 -0.02 -2.49 16 43 H 0.00 0.26 7.97 -2.38 -0.02 0.24 16 44 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 45 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 46 H 0.08 2.90 7.99 -2.39 -0.02 2.89 16 47 H 0.09 2.72 7.06 -2.39 -0.02 2.70 16 48 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 Total: -1.00 -71.81 391.33 -0.08 -71.88 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: 0.94 Total: 13.02 kcal Atomic # 6 Polarization: 7.04 SS G_CDS: 6.86 Total: 13.90 kcal Atomic # 7 Polarization: -107.99 SS G_CDS: -8.92 Total: -116.90 kcal Atomic # 8 Polarization: -26.01 SS G_CDS: -0.99 Total: -27.00 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.10 kcal Total: -71.81 -0.08 -71.88 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175332309.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.225 kcal (2) G-P(sol) polarization free energy of solvation -71.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds