Wall clock time and date at job start Tue Mar 31 2020 17:34:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35913 * 116.99473 * 2 1 4 4 C 1.38746 * 120.47975 * 0.02562 * 3 2 1 5 5 N 1.31809 * 120.68863 * 179.97438 * 4 3 2 6 6 C 1.31883 * 121.77412 * 359.97438 * 5 4 3 7 7 C 1.38207 * 120.88923 * 0.02562 * 6 5 4 8 8 C 1.50707 * 120.38379 * 180.02562 * 7 6 5 9 9 C 1.53001 * 109.47125 * 269.97813 * 8 7 6 10 10 C 1.50697 * 109.47123 * 180.02562 * 9 8 7 11 11 O 1.21281 * 120.00243 * 359.97438 * 10 9 8 12 12 N 1.34776 * 119.99897 * 180.02562 * 10 9 8 13 13 C 1.47074 * 120.88479 * 359.71668 * 12 10 9 14 14 C 1.53700 * 108.27718 * 128.75382 * 13 12 10 15 15 N 1.46903 * 109.25254 * 54.08478 * 14 13 12 16 16 C 1.46901 * 110.99700 * 172.60683 * 15 14 13 17 17 C 1.50702 * 109.47051 * 294.30231 * 16 15 14 18 18 H 1.08000 * 120.00333 * 359.97438 * 17 16 15 19 19 C 1.37877 * 119.99907 * 180.02562 * 17 16 15 20 20 N 1.31516 * 120.00140 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00122 * 180.02562 * 19 17 16 22 22 H 1.48508 * 109.47209 * 89.99661 * 21 19 17 23 23 H 1.48499 * 109.47590 * 209.99604 * 21 19 17 24 24 H 1.48505 * 109.47237 * 330.00066 * 21 19 17 25 25 C 1.46897 * 111.27201 * 296.75709 * 15 14 13 26 26 C 1.47085 * 120.87847 * 180.02562 * 12 10 9 27 27 C 1.38579 * 119.22492 * 0.02562 * 7 6 5 28 28 H 1.09000 * 109.47004 * 60.01029 * 1 2 3 29 29 H 1.09001 * 109.46483 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47414 * 300.00005 * 1 2 3 31 31 H 1.08003 * 119.65650 * 0.02562 * 4 3 2 32 32 H 1.07998 * 119.55071 * 180.02562 * 6 5 4 33 33 H 1.08994 * 109.47073 * 29.98340 * 8 7 6 34 34 H 1.08999 * 109.46877 * 149.98070 * 8 7 6 35 35 H 1.09005 * 109.47173 * 300.00411 * 9 8 7 36 36 H 1.08999 * 109.47033 * 60.00353 * 9 8 7 37 37 H 1.08991 * 109.63239 * 248.52784 * 13 12 10 38 38 H 1.09007 * 109.62521 * 9.10950 * 13 12 10 39 39 H 1.08998 * 109.64842 * 294.08613 * 14 13 12 40 40 H 1.08997 * 109.42438 * 173.94843 * 14 13 12 41 41 H 1.08993 * 109.47214 * 54.30316 * 16 15 14 42 42 H 1.09003 * 109.47258 * 174.30675 * 16 15 14 43 43 H 0.97002 * 120.00144 * 180.02562 * 20 19 17 44 44 H 1.09004 * 109.48915 * 303.14593 * 25 15 14 45 45 H 1.09002 * 109.49374 * 183.06547 * 25 15 14 46 46 H 1.08999 * 109.63024 * 350.89256 * 26 12 10 47 47 H 1.08993 * 109.63158 * 111.47408 * 26 12 10 48 48 H 1.07997 * 120.80829 * 180.27240 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.3000 2.3809 0.0005 5 7 1.8940 3.5575 0.0010 6 6 3.2078 3.6722 0.0016 7 6 4.0178 2.5524 0.0011 8 6 5.5179 2.6966 0.0023 9 6 6.0267 2.7463 -1.4398 10 6 7.5268 2.8899 -1.4387 11 8 8.1296 2.9474 -0.3879 12 7 8.1984 2.9555 -2.6053 13 6 7.4875 2.8826 -3.8908 14 6 7.9357 4.0701 -4.7576 15 7 9.4013 4.0704 -4.8581 16 6 9.8628 5.0820 -5.8181 17 6 9.4011 4.7078 -7.2030 18 1 8.8231 3.8083 -7.3549 19 6 9.7176 5.5134 -8.2763 20 7 10.4220 6.6085 -8.0914 21 14 9.1448 5.0500 -9.9928 22 1 7.8128 5.6541 -10.2501 23 1 10.1190 5.5554 -10.9932 24 1 9.0470 3.5720 -10.0999 25 6 10.0256 4.2689 -3.5433 26 6 9.6624 3.0952 -2.6267 27 6 3.4344 1.2954 -0.0005 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 0.2213 2.3268 0.0014 32 1 3.6567 4.6545 0.0024 33 1 5.7940 3.6169 0.5169 34 1 5.9644 1.8452 0.5159 35 1 5.7505 1.8259 -1.9545 36 1 5.5802 3.5977 -1.9535 37 1 7.7324 1.9463 -4.3921 38 1 6.4126 2.9386 -3.7184 39 1 7.6022 5.0026 -4.3024 40 1 7.5029 3.9757 -5.7534 41 1 9.4505 6.0541 -5.5479 42 1 10.9516 5.1311 -5.7990 43 1 10.6443 7.1754 -8.8465 44 1 9.6629 5.1987 -3.1050 45 1 11.1084 4.3187 -3.6585 46 1 10.0263 3.2918 -1.6183 47 1 10.1121 2.1789 -3.0091 48 1 4.0429 0.4031 0.0035 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001175789393.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:34:19 Heat of formation + Delta-G solvation = -54.761604 kcal Electronic energy + Delta-G solvation = -27917.393832 eV Core-core repulsion = 23971.710029 eV Total energy + Delta-G solvation = -3945.683802 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.72498 -41.15785 -39.26971 -38.92031 -35.96021 -35.58480 -34.39541 -32.70141 -32.07669 -30.78763 -29.88722 -28.40293 -27.38335 -25.81945 -24.62703 -24.51263 -23.73163 -22.50693 -21.69220 -19.77319 -18.91043 -18.48590 -18.19249 -18.03246 -17.60975 -16.96431 -16.77219 -16.68770 -16.62601 -15.99684 -15.55562 -15.32537 -15.27378 -15.02861 -14.74701 -14.62574 -14.23728 -14.10898 -14.05394 -13.80266 -13.55917 -13.16378 -13.02561 -12.97589 -12.73991 -12.71255 -12.58199 -12.40999 -12.36703 -12.29108 -12.10977 -12.02252 -11.75688 -11.27513 -10.87532 -10.61567 -10.44718 -10.42500 -9.74487 -9.43670 -9.05215 -8.19768 -6.30115 0.05749 0.27160 1.43685 1.45030 1.56401 1.61934 1.98437 2.23058 2.41434 2.74255 3.12795 3.23667 3.38419 3.58138 3.66644 3.88476 3.94146 3.98767 4.03235 4.07980 4.14272 4.23576 4.28077 4.33384 4.39325 4.41772 4.45578 4.48062 4.56629 4.68303 4.75432 4.76539 4.86629 4.91040 4.95372 4.96071 5.03385 5.15180 5.20626 5.24344 5.29969 5.46639 5.51960 5.64407 6.02867 6.22815 6.24102 6.45829 6.56889 6.85949 6.93890 7.14245 7.39901 8.91483 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013981 B = 0.002195 C = 0.002004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2002.266447 B =12754.725209 C =13967.080984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.326 6.326 3 C 0.075 3.925 4 C 0.005 3.995 5 N -0.472 5.472 6 C 0.054 3.946 7 C -0.085 4.085 8 C -0.052 4.052 9 C -0.128 4.128 10 C 0.513 3.487 11 O -0.583 6.583 12 N -0.613 5.613 13 C 0.120 3.880 14 C 0.047 3.953 15 N -0.539 5.539 16 C 0.207 3.793 17 C -0.520 4.520 18 H 0.070 0.930 19 C -0.001 4.001 20 N -0.936 5.936 21 Si 0.971 3.029 22 H -0.272 1.272 23 H -0.287 1.287 24 H -0.261 1.261 25 C 0.043 3.957 26 C 0.127 3.873 27 C -0.113 4.113 28 H 0.067 0.933 29 H 0.122 0.878 30 H 0.067 0.933 31 H 0.176 0.824 32 H 0.168 0.832 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.117 0.883 36 H 0.110 0.890 37 H 0.086 0.914 38 H 0.119 0.881 39 H 0.016 0.984 40 H 0.086 0.914 41 H -0.041 1.041 42 H 0.004 0.996 43 H 0.263 0.737 44 H 0.014 0.986 45 H 0.079 0.921 46 H 0.089 0.911 47 H 0.081 0.919 48 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.487 -13.408 16.426 28.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.239 6.239 3 C 0.027 3.973 4 C -0.153 4.153 5 N -0.181 5.181 6 C -0.103 4.103 7 C -0.087 4.087 8 C -0.091 4.091 9 C -0.167 4.167 10 C 0.304 3.696 11 O -0.464 6.464 12 N -0.346 5.346 13 C -0.002 4.002 14 C -0.082 4.082 15 N -0.264 5.264 16 C 0.081 3.919 17 C -0.558 4.558 18 H 0.088 0.912 19 C -0.199 4.199 20 N -0.577 5.577 21 Si 0.796 3.204 22 H -0.198 1.198 23 H -0.212 1.212 24 H -0.185 1.185 25 C -0.086 4.086 26 C 0.004 3.996 27 C -0.140 4.140 28 H 0.086 0.914 29 H 0.140 0.860 30 H 0.086 0.914 31 H 0.193 0.807 32 H 0.186 0.814 33 H 0.100 0.900 34 H 0.101 0.899 35 H 0.136 0.864 36 H 0.128 0.872 37 H 0.104 0.896 38 H 0.137 0.863 39 H 0.034 0.966 40 H 0.104 0.896 41 H -0.023 1.023 42 H 0.022 0.978 43 H 0.072 0.928 44 H 0.033 0.967 45 H 0.097 0.903 46 H 0.108 0.892 47 H 0.099 0.901 48 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -19.409 -13.159 16.711 28.794 hybrid contribution 0.371 0.682 -0.767 1.091 sum -19.037 -12.477 15.944 27.791 Atomic orbital electron populations 1.23425 0.76008 1.06032 1.02539 1.86078 1.23747 1.25697 1.88349 1.20159 0.93349 0.86118 0.97651 1.23232 1.01586 0.86956 1.03523 1.67570 1.12741 1.27338 1.10437 1.22868 0.88522 0.99627 0.99282 1.20686 0.97005 0.92780 0.98219 1.20190 0.88467 1.04709 0.95723 1.21702 0.89439 1.06375 0.99204 1.21189 0.91201 0.74862 0.82357 1.90662 1.71320 1.52473 1.31940 1.48352 1.07728 1.71756 1.06760 1.22117 0.97683 0.98532 0.81885 1.22485 0.88409 0.96635 1.00639 1.62011 1.07015 1.50151 1.07223 1.19383 0.94198 0.87312 0.91002 1.21448 1.33895 1.08426 0.92013 0.91165 1.25955 0.95281 0.94816 1.03853 1.70099 1.39953 1.14942 1.32694 0.85355 0.77921 0.78951 0.78220 1.19792 1.21239 1.18540 1.22440 0.99970 0.96413 0.89766 1.21586 0.80327 0.98109 0.99611 1.21075 0.91951 0.98971 1.01961 0.91436 0.86013 0.91408 0.80706 0.81441 0.89961 0.89858 0.86445 0.87161 0.89567 0.86324 0.96589 0.89600 1.02342 0.97809 0.92778 0.96740 0.90298 0.89239 0.90110 0.82823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.09 9.82 113.37 1.11 1.21 16 2 O -0.33 -4.78 10.51 -92.57 -0.97 -5.76 16 3 C 0.07 1.23 6.71 22.60 0.15 1.39 16 4 C 0.00 0.08 10.22 84.82 0.87 0.95 16 5 N -0.47 -9.58 10.36 -195.44 -2.02 -11.60 16 6 C 0.05 0.98 10.85 84.68 0.92 1.90 16 7 C -0.08 -1.38 5.15 -19.79 -0.10 -1.48 16 8 C -0.05 -0.86 4.66 29.85 0.14 -0.72 16 9 C -0.13 -2.11 4.05 29.85 0.12 -1.98 16 10 C 0.51 12.90 7.71 87.66 0.68 13.58 16 11 O -0.58 -18.55 15.43 -3.03 -0.05 -18.60 16 12 N -0.61 -16.31 3.00 -816.98 -2.45 -18.76 16 13 C 0.12 2.91 6.53 86.51 0.57 3.47 16 14 C 0.05 1.63 5.47 86.54 0.47 2.10 16 15 N -0.54 -22.13 4.62 -898.78 -4.15 -26.28 16 16 C 0.21 10.79 4.72 85.56 0.40 11.19 16 17 C -0.52 -28.24 8.41 25.60 0.22 -28.02 16 18 H 0.07 3.65 7.13 -2.91 -0.02 3.63 16 19 C 0.00 -0.06 5.46 84.65 0.46 0.40 16 20 N -0.94 -55.66 13.29 21.45 0.28 -55.38 16 21 Si 0.97 42.89 29.54 68.60 2.03 44.91 16 22 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 23 H -0.29 -12.58 7.11 99.48 0.71 -11.87 16 24 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 25 C 0.04 1.54 5.62 86.40 0.49 2.03 16 26 C 0.13 3.72 6.60 86.36 0.57 4.29 16 27 C -0.11 -1.82 9.81 22.56 0.22 -1.60 16 28 H 0.07 0.33 7.68 -2.39 -0.02 0.32 16 29 H 0.12 0.33 8.14 -2.39 -0.02 0.31 16 30 H 0.07 0.31 7.68 -2.39 -0.02 0.30 16 31 H 0.18 1.97 6.32 -2.91 -0.02 1.95 16 32 H 0.17 2.51 8.06 -2.91 -0.02 2.49 16 33 H 0.08 1.46 8.05 -2.39 -0.02 1.44 16 34 H 0.08 1.42 8.05 -2.39 -0.02 1.40 16 35 H 0.12 1.47 7.99 -2.38 -0.02 1.45 16 36 H 0.11 1.59 7.67 -2.39 -0.02 1.57 16 37 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 38 H 0.12 2.00 6.02 -2.38 -0.01 1.98 16 39 H 0.02 0.58 8.14 -2.39 -0.02 0.56 16 40 H 0.09 3.15 6.67 -2.39 -0.02 3.13 16 41 H -0.04 -2.36 8.12 -2.39 -0.02 -2.38 16 42 H 0.00 0.22 7.97 -2.39 -0.02 0.20 16 43 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 44 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 45 H 0.08 2.79 7.99 -2.39 -0.02 2.77 16 46 H 0.09 2.64 7.06 -2.39 -0.02 2.62 16 47 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 48 H 0.15 2.04 8.06 -2.91 -0.02 2.02 16 Total: -1.00 -72.18 389.39 0.89 -71.29 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: 0.95 Total: 11.48 kcal Atomic # 6 Polarization: 1.41 SS G_CDS: 7.28 Total: 8.69 kcal Atomic # 7 Polarization: -103.67 SS G_CDS: -8.34 Total: -112.02 kcal Atomic # 8 Polarization: -23.34 SS G_CDS: -1.02 Total: -24.36 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.91 kcal Total: -72.18 0.89 -71.29 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175789393.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.525 kcal (2) G-P(sol) polarization free energy of solvation -72.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds