Wall clock time and date at job start Tue Mar 31 2020 17:20:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36936 * 120.00035 * 2 1 4 4 H 1.07993 * 119.99754 * 148.75214 * 3 2 1 5 5 C 1.38804 * 119.99708 * 328.75025 * 3 2 1 6 6 N 1.31624 * 119.99953 * 153.54074 * 5 3 2 7 7 Si 1.86797 * 120.00465 * 333.53624 * 5 3 2 8 8 H 1.48507 * 109.46992 * 94.76575 * 7 5 3 9 9 H 1.48500 * 109.47472 * 214.76785 * 7 5 3 10 10 H 1.48497 * 109.46901 * 334.76865 * 7 5 3 11 11 C 1.46505 * 119.99673 * 180.02562 * 2 1 3 12 12 H 1.09002 * 110.88545 * 182.42503 * 11 2 1 13 13 C 1.55153 * 111.00628 * 58.54290 * 11 2 1 14 14 C 1.54320 * 102.94564 * 206.38320 * 13 11 2 15 15 N 1.47023 * 107.27014 * 22.19203 * 14 13 11 16 16 C 1.34771 * 125.65146 * 181.09943 * 15 14 13 17 17 O 1.21281 * 120.00555 * 179.97438 * 16 15 14 18 18 C 1.50702 * 119.99806 * 359.95486 * 16 15 14 19 19 C 1.53004 * 109.47058 * 179.97438 * 18 16 15 20 20 C 1.53004 * 109.47173 * 180.02562 * 19 18 16 21 21 N 1.46498 * 109.46875 * 180.02562 * 20 19 18 22 22 C 1.35763 * 119.62080 * 269.72056 * 21 20 19 23 23 C 1.35354 * 120.70006 * 179.76845 * 22 21 20 24 24 C 1.40192 * 119.94529 * 0.50814 * 23 22 21 25 25 C 1.36405 * 119.26835 * 359.75054 * 24 23 22 26 26 C 1.34658 * 119.62884 * 90.00038 * 21 20 19 27 27 O 1.22063 * 119.97864 * 359.97438 * 26 21 20 28 28 C 1.47428 * 108.70031 * 1.06153 * 15 14 13 29 29 H 1.09006 * 109.46982 * 275.57442 * 1 2 3 30 30 H 1.08998 * 109.47493 * 35.57727 * 1 2 3 31 31 H 1.09001 * 109.47380 * 155.57689 * 1 2 3 32 32 H 0.96999 * 120.00504 * 179.97438 * 6 5 3 33 33 H 1.08999 * 110.72313 * 324.74879 * 13 11 2 34 34 H 1.09008 * 110.72020 * 88.02382 * 13 11 2 35 35 H 1.08996 * 109.88648 * 141.61203 * 14 13 11 36 36 H 1.09000 * 109.88594 * 262.78016 * 14 13 11 37 37 H 1.09001 * 109.47207 * 299.99357 * 18 16 15 38 38 H 1.08997 * 109.47256 * 59.99987 * 18 16 15 39 39 H 1.09001 * 109.46890 * 299.99923 * 19 18 16 40 40 H 1.09001 * 109.47395 * 59.99654 * 19 18 16 41 41 H 1.09004 * 109.46574 * 299.99970 * 20 19 18 42 42 H 1.08997 * 109.47041 * 59.99786 * 20 19 18 43 43 H 1.07999 * 119.64979 * 359.97438 * 22 21 20 44 44 H 1.07999 * 120.02435 * 180.23766 * 23 22 21 45 45 H 1.08001 * 120.36828 * 179.77290 * 24 23 22 46 46 H 1.07995 * 120.34348 * 180.02562 * 25 24 23 47 47 H 1.08999 * 110.36491 * 217.03019 * 28 15 14 48 48 H 1.09003 * 110.45910 * 94.75943 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1121 1.2537 0.4852 5 6 1.6067 2.3007 -0.6236 6 7 1.9407 3.5084 -0.2204 7 14 0.4020 2.0874 -2.0352 8 1 -0.9871 2.1369 -1.5122 9 1 0.5983 3.1788 -3.0229 10 1 0.6369 0.7767 -2.6925 11 6 2.1975 -1.2688 -0.0006 12 1 3.2730 -1.0967 0.0426 13 6 1.8209 -2.1278 -1.2365 14 6 2.0904 -3.5679 -0.7517 15 7 2.0434 -3.5498 0.7177 16 6 2.2500 -4.6102 1.5234 17 8 2.1866 -4.4786 2.7274 18 6 2.5593 -5.9597 0.9282 19 6 2.7490 -6.9811 2.0515 20 6 3.0637 -8.3511 1.4472 21 7 3.2448 -9.3292 2.5228 22 6 4.4816 -9.5312 3.0449 23 6 4.6730 -10.4260 4.0423 24 6 3.5887 -11.1630 4.5388 25 6 2.3477 -10.9624 4.0094 26 6 2.1836 -10.0217 2.9784 27 8 1.0787 -9.8322 2.4955 28 6 1.7337 -2.1792 1.1638 29 1 -0.3633 0.0998 1.0229 30 1 -0.3634 0.8358 -0.5979 31 1 -0.3634 -0.9357 -0.4249 32 1 1.5615 4.2875 -0.6564 33 1 0.7692 -1.9971 -1.4911 34 1 2.4580 -1.8814 -2.0860 35 1 1.3237 -4.2390 -1.1388 36 1 3.0750 -3.8939 -1.0870 37 1 1.7343 -6.2722 0.2880 38 1 3.4733 -5.8956 0.3378 39 1 3.5742 -6.6684 2.6913 40 1 1.8353 -7.0454 2.6423 41 1 2.2388 -8.6640 0.8071 42 1 3.9776 -8.2865 0.8567 43 1 5.3211 -8.9696 2.6626 44 1 5.6609 -10.5753 4.4522 45 1 3.7343 -11.8814 5.3319 46 1 1.5001 -11.5204 4.3791 47 1 2.2858 -1.9425 2.0734 48 1 0.6625 -2.0657 1.3307 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001191727231.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:20:08 Heat of formation + Delta-G solvation = -1.150641 kcal Electronic energy + Delta-G solvation = -28023.272517 eV Core-core repulsion = 24079.913460 eV Total energy + Delta-G solvation = -3943.359057 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.66644 -39.95692 -37.77110 -37.19813 -35.83919 -35.03177 -33.08890 -31.85406 -30.33762 -30.17890 -28.75204 -27.44170 -26.26108 -24.56273 -23.94668 -23.04972 -22.47436 -21.81113 -19.50431 -19.10777 -17.94925 -17.65046 -17.13046 -16.94909 -16.65379 -16.34209 -15.87737 -15.75657 -15.27507 -14.93201 -14.69316 -14.48080 -14.02571 -13.80067 -13.35093 -13.11544 -13.02532 -12.85440 -12.69877 -12.52056 -12.38288 -12.32801 -12.20214 -12.07937 -11.96448 -11.90544 -11.50599 -11.13056 -11.03386 -10.87173 -10.58457 -10.47726 -10.23210 -10.22354 -10.00985 -9.76080 -9.56870 -8.61608 -8.44236 -8.33446 -7.03713 -6.07523 -3.42409 0.46359 1.52510 2.25116 2.69775 3.07313 3.26340 3.32520 3.42055 3.45760 4.14562 4.21725 4.34361 4.45708 4.48720 4.62385 4.71005 4.72882 4.84298 4.87475 4.89163 5.02865 5.07795 5.10777 5.17129 5.26196 5.28224 5.40614 5.59257 5.63759 5.66757 5.68829 5.71651 5.84072 5.90105 5.93125 6.05198 6.15427 6.16729 6.25255 6.37423 6.40039 6.57240 6.66066 6.72821 6.73181 7.65722 7.72452 7.90120 8.23522 8.26823 8.86219 9.62404 9.98350 11.07861 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.034273 B = 0.001895 C = 0.001871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.779714 B =14774.295245 C =14960.285771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.595 5.595 3 C -0.274 4.274 4 H 0.083 0.917 5 C 0.034 3.966 6 N -0.893 5.893 7 Si 0.882 3.118 8 H -0.286 1.286 9 H -0.303 1.303 10 H -0.272 1.272 11 C 0.173 3.827 12 H 0.087 0.913 13 C -0.159 4.159 14 C 0.103 3.897 15 N -0.615 5.615 16 C 0.525 3.475 17 O -0.545 6.545 18 C -0.132 4.132 19 C -0.118 4.118 20 C 0.089 3.911 21 N -0.494 5.494 22 C 0.137 3.863 23 C -0.237 4.237 24 C -0.017 4.017 25 C -0.246 4.246 26 C 0.511 3.489 27 O -0.550 6.550 28 C 0.088 3.912 29 H 0.022 0.978 30 H 0.041 0.959 31 H 0.036 0.964 32 H 0.264 0.736 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.062 0.938 36 H 0.066 0.934 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.076 0.924 40 H 0.080 0.920 41 H 0.102 0.898 42 H 0.093 0.907 43 H 0.162 0.838 44 H 0.145 0.855 45 H 0.134 0.866 46 H 0.147 0.853 47 H 0.076 0.924 48 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.985 -29.032 2.141 29.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.317 5.317 3 C -0.402 4.402 4 H 0.101 0.899 5 C -0.167 4.167 6 N -0.533 5.533 7 Si 0.713 3.287 8 H -0.215 1.215 9 H -0.231 1.231 10 H -0.197 1.197 11 C 0.063 3.937 12 H 0.106 0.894 13 C -0.199 4.199 14 C -0.021 4.021 15 N -0.349 5.349 16 C 0.313 3.687 17 O -0.423 6.423 18 C -0.172 4.172 19 C -0.156 4.156 20 C -0.032 4.032 21 N -0.204 5.204 22 C 0.009 3.991 23 C -0.260 4.260 24 C -0.039 4.039 25 C -0.267 4.267 26 C 0.313 3.687 27 O -0.433 6.433 28 C -0.036 4.036 29 H 0.040 0.960 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.074 0.926 33 H 0.092 0.908 34 H 0.099 0.901 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.114 0.886 38 H 0.113 0.887 39 H 0.095 0.905 40 H 0.099 0.901 41 H 0.120 0.880 42 H 0.111 0.889 43 H 0.179 0.821 44 H 0.162 0.838 45 H 0.151 0.849 46 H 0.165 0.835 47 H 0.094 0.906 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 6.216 -28.645 2.465 29.415 hybrid contribution -0.657 0.027 -0.891 1.107 sum 5.559 -28.617 1.574 29.195 Atomic orbital electron populations 1.21356 0.84591 0.98731 0.98979 1.43982 1.00603 1.01333 1.85754 1.18786 1.05430 0.85214 1.30795 0.89921 1.25306 0.98230 0.94973 0.98146 1.69920 1.45747 0.97590 1.40091 0.86918 0.80486 0.77197 0.84088 1.21481 1.23123 1.19672 1.21551 0.96889 0.85169 0.90070 0.89450 1.23298 1.02813 0.92842 1.00918 1.22055 1.00913 0.99132 0.79969 1.48507 1.69463 1.09629 1.07305 1.20151 0.76966 0.85109 0.86424 1.90714 1.52091 1.85009 1.14506 1.21513 1.04069 0.92361 0.99275 1.21647 1.04407 0.91580 0.97995 1.22083 1.04407 0.87922 0.88834 1.45570 1.08164 1.34270 1.32392 1.22013 0.87612 0.95898 0.93577 1.20669 1.00823 1.02537 1.01992 1.21452 0.92059 0.94754 0.95625 1.22149 0.99453 1.03743 1.01400 1.17194 0.83882 0.82625 0.84994 1.90978 1.23249 1.68522 1.60521 1.22885 1.00917 0.79864 0.99945 0.95978 0.94153 0.94525 0.92592 0.90786 0.90141 0.91923 0.91572 0.88606 0.88675 0.90541 0.90115 0.87965 0.88855 0.82051 0.83766 0.84858 0.83545 0.90595 0.91552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.29 8.37 59.85 0.50 2.79 16 2 N -0.60 -13.54 2.62 -171.03 -0.45 -13.98 16 3 C -0.27 -7.42 9.89 -15.06 -0.15 -7.57 16 4 H 0.08 2.40 8.06 -52.49 -0.42 1.97 16 5 C 0.03 0.97 5.29 -17.43 -0.09 0.87 16 6 N -0.89 -26.72 13.97 55.49 0.78 -25.94 16 7 Si 0.88 21.63 25.09 -169.99 -4.26 17.37 16 8 H -0.29 -6.88 6.61 56.52 0.37 -6.51 16 9 H -0.30 -7.57 7.11 56.52 0.40 -7.17 16 10 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 11 C 0.17 3.18 3.53 -65.78 -0.23 2.95 16 12 H 0.09 1.65 7.96 -51.93 -0.41 1.23 16 13 C -0.16 -2.36 6.49 -24.90 -0.16 -2.52 16 14 C 0.10 1.20 6.49 -3.07 -0.02 1.18 16 15 N -0.61 -8.92 3.33 -170.52 -0.57 -9.48 16 16 C 0.53 7.56 7.85 -10.99 -0.09 7.47 16 17 O -0.55 -10.10 16.24 5.56 0.09 -10.01 16 18 C -0.13 -1.21 4.89 -27.88 -0.14 -1.35 16 19 C -0.12 -1.12 4.83 -26.73 -0.13 -1.25 16 20 C 0.09 0.64 5.33 -4.04 -0.02 0.62 16 21 N -0.49 -4.13 2.58 -119.77 -0.31 -4.44 16 22 C 0.14 0.73 10.28 -16.84 -0.17 0.56 16 23 C -0.24 -1.16 10.01 -39.88 -0.40 -1.56 16 24 C -0.02 -0.10 10.10 -39.51 -0.40 -0.50 16 25 C -0.25 -2.18 9.99 -39.38 -0.39 -2.57 16 26 C 0.51 5.86 7.41 -15.45 -0.11 5.75 16 27 O -0.55 -8.50 16.64 4.86 0.08 -8.42 16 28 C 0.09 1.53 6.47 -2.53 -0.02 1.51 16 29 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.04 0.93 2.54 -51.93 -0.13 0.80 16 31 H 0.04 0.67 6.33 -51.93 -0.33 0.34 16 32 H 0.26 7.48 8.31 -40.82 -0.34 7.15 16 33 H 0.07 1.15 6.37 -51.93 -0.33 0.82 16 34 H 0.08 1.15 8.14 -51.92 -0.42 0.73 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.08 0.75 8.10 -51.93 -0.42 0.33 16 40 H 0.08 1.04 8.10 -51.93 -0.42 0.62 16 41 H 0.10 0.84 7.39 -51.93 -0.38 0.46 16 42 H 0.09 0.35 8.01 -51.93 -0.42 -0.07 16 43 H 0.16 0.33 8.03 -52.49 -0.42 -0.10 16 44 H 0.14 0.34 8.06 -52.49 -0.42 -0.08 16 45 H 0.13 0.43 8.06 -52.49 -0.42 0.01 16 46 H 0.15 1.18 8.06 -52.49 -0.42 0.76 16 47 H 0.08 1.43 8.04 -51.93 -0.42 1.02 16 48 H 0.07 1.20 7.05 -51.93 -0.37 0.84 16 LS Contribution 385.81 15.07 5.81 5.81 Total: -1.00 -36.32 385.81 -8.29 -44.61 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: -7.44 Total: -1.89 kcal Atomic # 6 Polarization: 8.40 SS G_CDS: -2.02 Total: 6.38 kcal Atomic # 7 Polarization: -53.30 SS G_CDS: -0.55 Total: -53.85 kcal Atomic # 8 Polarization: -18.60 SS G_CDS: 0.17 Total: -18.43 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.26 Total: 17.37 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -36.32 -8.29 -44.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191727231.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.458 kcal (2) G-P(sol) polarization free energy of solvation -36.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds