Wall clock time and date at job start Tue Mar 31 2020 17:49:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42903 * 113.99846 * 2 1 4 4 C 1.50700 * 109.47277 * 179.97438 * 3 2 1 5 5 C 1.38352 * 120.34974 * 270.02332 * 4 3 2 6 6 N 1.31917 * 121.08083 * 179.97438 * 5 4 3 7 7 C 1.31694 * 121.87979 * 359.72487 * 6 5 4 8 8 C 1.39524 * 120.56784 * 0.53723 * 7 6 5 9 9 C 1.47838 * 120.56370 * 179.75813 * 8 7 6 10 10 O 1.21552 * 119.99839 * 40.97632 * 9 8 7 11 11 N 1.34779 * 119.99861 * 220.71525 * 9 8 7 12 12 C 1.46921 * 120.63053 * 5.72373 * 11 9 8 13 13 C 1.53620 * 108.54265 * 126.37226 * 12 11 9 14 14 C 1.53041 * 109.24071 * 54.85861 * 13 12 11 15 15 C 1.53001 * 109.46523 * 178.49167 * 14 13 12 16 16 N 1.46497 * 109.47033 * 295.07340 * 15 14 13 17 17 C 1.36935 * 120.00289 * 179.97438 * 16 15 14 18 18 H 1.08001 * 119.99920 * 359.97438 * 17 16 15 19 19 C 1.38811 * 120.00250 * 179.97438 * 17 16 15 20 20 N 1.31616 * 119.99946 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99949 * 179.97438 * 19 17 16 22 22 H 1.48492 * 109.47377 * 0.02562 * 21 19 17 23 23 H 1.48510 * 109.46690 * 120.00415 * 21 19 17 24 24 H 1.48496 * 109.47439 * 240.00095 * 21 19 17 25 25 C 1.53041 * 109.53747 * 298.51101 * 14 13 12 26 26 C 1.46923 * 120.62958 * 186.01487 * 11 9 8 27 27 C 1.38359 * 120.34733 * 89.99990 * 4 3 2 28 28 H 1.09001 * 109.47342 * 299.99994 * 1 2 3 29 29 H 1.08999 * 109.47045 * 60.00525 * 1 2 3 30 30 H 1.09006 * 109.46843 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47070 * 59.99359 * 3 2 1 32 32 H 1.09004 * 109.46800 * 300.00030 * 3 2 1 33 33 H 1.07998 * 119.45584 * 359.97438 * 5 4 3 34 34 H 1.08003 * 119.71809 * 180.27645 * 7 6 5 35 35 H 1.08998 * 109.59175 * 246.20484 * 12 11 9 36 36 H 1.09000 * 109.58665 * 6.63905 * 12 11 9 37 37 H 1.09000 * 109.63776 * 294.87118 * 13 12 11 38 38 H 1.08995 * 109.43705 * 174.72699 * 13 12 11 39 39 H 1.09001 * 109.45247 * 58.52428 * 14 13 12 40 40 H 1.09003 * 109.46806 * 55.06277 * 15 14 13 41 41 H 1.08991 * 109.47412 * 175.06548 * 15 14 13 42 42 H 0.97000 * 120.00155 * 359.97438 * 16 15 14 43 43 H 0.96998 * 120.00384 * 179.97438 * 20 19 17 44 44 H 1.09001 * 109.50115 * 301.41518 * 25 14 13 45 45 H 1.09005 * 109.50047 * 181.31410 * 25 14 13 46 46 H 1.09007 * 109.58548 * 353.36495 * 26 11 9 47 47 H 1.08991 * 109.59236 * 113.65007 * 26 11 9 48 48 H 1.08005 * 120.85290 * 359.97438 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 0.0006 5 6 4.2088 1.1312 1.1948 6 7 5.5237 1.0266 1.2122 7 6 6.2313 0.9649 0.1032 8 6 5.6047 1.0202 -1.1422 9 6 6.3995 0.9563 -2.3871 10 8 7.3355 0.1854 -2.4717 11 7 6.0831 1.7492 -3.4301 12 6 5.0329 2.7688 -3.3036 13 6 5.6145 4.1248 -3.7313 14 6 6.2026 4.0000 -5.1387 15 6 6.7498 5.3574 -5.5849 16 7 5.6457 6.3124 -5.7077 17 6 5.8956 7.6015 -6.0963 18 1 6.9066 7.9143 -6.3117 19 6 4.8494 8.5063 -6.2132 20 7 3.6173 8.1254 -5.9502 21 14 5.1904 10.2650 -6.7426 22 1 6.6465 10.4382 -6.9763 23 1 4.4500 10.5569 -7.9965 24 1 4.7454 11.1980 -5.6765 25 6 7.3357 2.9713 -5.1305 26 6 6.7774 1.6060 -4.7169 27 6 4.2098 1.1312 -1.1931 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6884 1.8465 0.8900 32 1 1.6885 1.8464 -0.8900 33 1 3.6670 1.1742 2.1281 34 1 7.3062 0.8751 0.1582 35 1 4.1922 2.5094 -3.9471 36 1 4.6994 2.8233 -2.2673 37 1 6.3980 4.4234 -3.0349 38 1 4.8233 4.8745 -3.7329 39 1 5.4242 3.6773 -5.8301 40 1 7.4645 5.7214 -4.8467 41 1 7.2463 5.2498 -6.5491 42 1 4.7377 6.0317 -5.5139 43 1 2.8863 8.7577 -6.0315 44 1 8.1029 3.2807 -4.4208 45 1 7.7695 2.8999 -6.1280 46 1 7.5953 0.8928 -4.6135 47 1 6.0768 1.2512 -5.4727 48 1 3.6915 1.1717 -2.1398 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205479179.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:49 Heat of formation + Delta-G solvation = -31.586237 kcal Electronic energy + Delta-G solvation = -28556.142557 eV Core-core repulsion = 24611.463714 eV Total energy + Delta-G solvation = -3944.678843 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.17117 -39.70818 -38.15188 -37.67538 -35.07061 -33.65379 -32.97730 -32.29612 -30.84662 -30.34509 -27.88409 -26.95024 -25.91908 -24.91063 -23.80284 -23.36379 -22.71972 -21.62519 -20.36660 -19.27588 -17.69588 -17.36423 -17.11640 -16.93945 -16.82285 -16.20900 -15.72759 -15.56705 -15.16225 -14.82357 -14.37556 -14.15539 -14.02142 -13.78035 -13.68500 -13.51390 -13.35838 -13.21057 -12.83815 -12.78824 -12.44040 -12.29079 -12.25783 -11.87295 -11.85155 -11.23989 -11.04078 -10.88641 -10.48934 -10.45004 -10.39864 -10.34258 -10.18430 -10.03919 -9.92020 -9.69515 -9.67836 -9.42977 -8.91195 -8.72233 -6.95160 -5.80912 -3.08783 0.41437 0.75750 2.50477 2.79374 3.19216 3.40373 3.46651 3.48411 3.69415 3.99874 4.22027 4.34817 4.43999 4.54727 4.55614 4.62129 4.78699 4.85710 4.95539 4.98367 5.02080 5.03024 5.10823 5.18786 5.25392 5.28808 5.29909 5.40071 5.50503 5.57887 5.63181 5.70800 5.74238 5.88713 5.90621 6.03404 6.14480 6.18557 6.22629 6.37215 6.41555 6.56949 6.66332 6.76108 6.87702 7.20523 7.53896 7.67679 7.93677 8.38593 9.49988 10.07677 10.42401 11.42184 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011007 B = 0.002761 C = 0.002397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2543.173254 B =10137.583985 C =11680.425707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.387 6.387 3 C 0.106 3.894 4 C -0.150 4.150 5 C 0.140 3.860 6 N -0.486 5.486 7 C 0.159 3.841 8 C -0.180 4.180 9 C 0.566 3.434 10 O -0.536 6.536 11 N -0.600 5.600 12 C 0.097 3.903 13 C -0.124 4.124 14 C -0.094 4.094 15 C 0.158 3.842 16 N -0.732 5.732 17 C -0.237 4.237 18 H 0.070 0.930 19 C -0.015 4.015 20 N -0.934 5.934 21 Si 0.906 3.094 22 H -0.281 1.281 23 H -0.292 1.292 24 H -0.292 1.292 25 C -0.126 4.126 26 C 0.113 3.887 27 C -0.022 4.022 28 H 0.044 0.956 29 H 0.045 0.955 30 H 0.087 0.913 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.161 0.839 34 H 0.166 0.834 35 H 0.074 0.926 36 H 0.085 0.915 37 H 0.065 0.935 38 H 0.089 0.911 39 H 0.072 0.928 40 H 0.018 0.982 41 H 0.019 0.981 42 H 0.383 0.617 43 H 0.254 0.746 44 H 0.067 0.933 45 H 0.077 0.923 46 H 0.092 0.908 47 H 0.070 0.930 48 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.610 -17.313 11.950 21.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.306 6.306 3 C 0.029 3.971 4 C -0.153 4.153 5 C -0.017 4.017 6 N -0.193 5.193 7 C 0.001 3.999 8 C -0.185 4.185 9 C 0.353 3.647 10 O -0.414 6.414 11 N -0.332 5.332 12 C -0.026 4.026 13 C -0.162 4.162 14 C -0.113 4.113 15 C 0.030 3.970 16 N -0.376 5.376 17 C -0.368 4.368 18 H 0.088 0.912 19 C -0.210 4.210 20 N -0.584 5.584 21 Si 0.737 3.263 22 H -0.206 1.206 23 H -0.219 1.219 24 H -0.219 1.219 25 C -0.165 4.165 26 C -0.009 4.009 27 C -0.048 4.048 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.106 0.894 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.178 0.822 34 H 0.184 0.816 35 H 0.092 0.908 36 H 0.103 0.897 37 H 0.083 0.917 38 H 0.107 0.893 39 H 0.091 0.909 40 H 0.036 0.964 41 H 0.037 0.963 42 H 0.217 0.783 43 H 0.064 0.936 44 H 0.086 0.914 45 H 0.095 0.905 46 H 0.110 0.890 47 H 0.088 0.912 48 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -2.463 -17.760 12.640 21.937 hybrid contribution -0.960 1.338 -1.121 1.992 sum -3.423 -16.422 11.518 20.349 Atomic orbital electron populations 1.22793 0.80456 1.03054 1.00348 1.87965 1.20043 1.27090 1.95496 1.21256 0.88429 0.85458 1.01966 1.20526 0.95915 1.04630 0.94180 1.22910 0.89971 0.91236 0.97584 1.67835 1.07820 1.12963 1.30695 1.22975 1.00783 0.90174 0.85922 1.20954 0.94570 1.07250 0.95764 1.18062 0.83441 0.80500 0.82690 1.90783 1.29208 1.39256 1.82193 1.48063 1.38227 1.35042 1.11909 1.22279 0.89829 0.88240 1.02208 1.22005 1.01807 0.95397 0.97029 1.21315 0.97423 0.96094 0.96462 1.20669 0.91578 0.87610 0.97113 1.42377 1.04982 1.07999 1.82286 1.19282 0.93344 0.86903 1.37300 0.91203 1.24721 0.95338 0.98331 1.02655 1.69655 0.98349 1.34482 1.55869 0.86127 0.77317 0.84982 0.77849 1.20580 1.21878 1.21878 1.21915 0.98490 0.93950 1.02103 1.21686 0.97378 0.98474 0.83338 1.21780 0.92666 0.91389 0.98997 0.93781 0.93669 0.89422 0.91561 0.91579 0.82168 0.81640 0.90823 0.89716 0.91664 0.89260 0.90926 0.96395 0.96292 0.78316 0.93611 0.91448 0.90465 0.88994 0.91210 0.83762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.29 16 2 O -0.39 -3.44 10.69 -35.23 -0.38 -3.82 16 3 C 0.11 0.78 6.08 36.01 0.22 1.00 16 4 C -0.15 -1.37 5.52 -104.54 -0.58 -1.95 16 5 C 0.14 1.33 10.85 -17.47 -0.19 1.14 16 6 N -0.49 -5.55 10.35 -12.91 -0.13 -5.68 16 7 C 0.16 1.85 10.82 -17.13 -0.19 1.66 16 8 C -0.18 -2.10 5.10 -104.82 -0.53 -2.63 16 9 C 0.57 7.55 7.33 -12.33 -0.09 7.46 16 10 O -0.54 -8.69 16.37 5.32 0.09 -8.60 16 11 N -0.60 -7.27 2.97 -173.63 -0.51 -7.79 16 12 C 0.10 1.08 4.98 -3.49 -0.02 1.07 16 13 C -0.12 -1.74 5.26 -26.39 -0.14 -1.88 16 14 C -0.09 -1.39 2.19 -90.58 -0.20 -1.59 16 15 C 0.16 3.05 5.65 -4.04 -0.02 3.02 16 16 N -0.73 -17.83 5.32 -59.91 -0.32 -18.14 16 17 C -0.24 -6.52 9.99 -15.06 -0.15 -6.67 16 18 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 19 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 20 N -0.93 -27.49 13.06 55.49 0.72 -26.77 16 21 Si 0.91 22.12 29.55 -169.99 -5.02 17.09 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 23 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 24 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 25 C -0.13 -1.57 5.36 -26.61 -0.14 -1.71 16 26 C 0.11 1.32 6.44 -3.71 -0.02 1.30 16 27 C -0.02 -0.22 7.20 -38.87 -0.28 -0.50 16 28 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.37 8.09 -51.93 -0.42 -0.05 16 32 H 0.07 0.43 8.09 -51.93 -0.42 0.01 16 33 H 0.16 1.08 8.06 -52.49 -0.42 0.66 16 34 H 0.17 1.77 8.06 -52.48 -0.42 1.35 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.08 0.87 4.78 -51.93 -0.25 0.62 16 37 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.09 1.43 7.15 -51.93 -0.37 1.06 16 39 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 42 H 0.38 9.63 6.84 -40.82 -0.28 9.35 16 43 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 44 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 46 H 0.09 1.12 7.00 -51.93 -0.36 0.76 16 47 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 48 H 0.14 1.24 6.74 -52.48 -0.35 0.89 16 LS Contribution 389.42 15.07 5.87 5.87 Total: -1.00 -33.35 389.42 -8.50 -41.86 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: -7.50 Total: 5.50 kcal Atomic # 6 Polarization: 1.80 SS G_CDS: -1.32 Total: 0.48 kcal Atomic # 7 Polarization: -58.14 SS G_CDS: -0.24 Total: -58.39 kcal Atomic # 8 Polarization: -12.13 SS G_CDS: -0.29 Total: -12.42 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.35 -8.50 -41.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205479179.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.270 kcal (2) G-P(sol) polarization free energy of solvation -33.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds