Wall clock time and date at job start Tue Mar 31 2020 17:49:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42903 * 113.99846 * 2 1 4 4 C 1.50700 * 109.47277 * 179.97438 * 3 2 1 5 5 C 1.38352 * 120.34974 * 270.02332 * 4 3 2 6 6 N 1.31917 * 121.08083 * 179.97438 * 5 4 3 7 7 C 1.31694 * 121.87979 * 359.72487 * 6 5 4 8 8 C 1.39524 * 120.56784 * 0.53723 * 7 6 5 9 9 C 1.47838 * 120.56370 * 179.75813 * 8 7 6 10 10 O 1.21552 * 119.99839 * 40.97632 * 9 8 7 11 11 N 1.34779 * 119.99861 * 220.71525 * 9 8 7 12 12 C 1.46921 * 120.63053 * 5.72373 * 11 9 8 13 13 C 1.53620 * 108.54265 * 126.37226 * 12 11 9 14 14 C 1.53041 * 109.24071 * 54.85861 * 13 12 11 15 15 C 1.53001 * 109.46523 * 178.49167 * 14 13 12 16 16 N 1.46497 * 109.47033 * 295.07340 * 15 14 13 17 17 C 1.36935 * 120.00289 * 179.97438 * 16 15 14 18 18 H 1.08001 * 119.99920 * 359.97438 * 17 16 15 19 19 C 1.38811 * 120.00250 * 179.97438 * 17 16 15 20 20 N 1.31616 * 119.99946 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99949 * 179.97438 * 19 17 16 22 22 H 1.48492 * 109.47377 * 0.02562 * 21 19 17 23 23 H 1.48510 * 109.46690 * 120.00415 * 21 19 17 24 24 H 1.48496 * 109.47439 * 240.00095 * 21 19 17 25 25 C 1.53041 * 109.53747 * 298.51101 * 14 13 12 26 26 C 1.46923 * 120.62958 * 186.01487 * 11 9 8 27 27 C 1.38359 * 120.34733 * 89.99990 * 4 3 2 28 28 H 1.09001 * 109.47342 * 299.99994 * 1 2 3 29 29 H 1.08999 * 109.47045 * 60.00525 * 1 2 3 30 30 H 1.09006 * 109.46843 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47070 * 59.99359 * 3 2 1 32 32 H 1.09004 * 109.46800 * 300.00030 * 3 2 1 33 33 H 1.07998 * 119.45584 * 359.97438 * 5 4 3 34 34 H 1.08003 * 119.71809 * 180.27645 * 7 6 5 35 35 H 1.08998 * 109.59175 * 246.20484 * 12 11 9 36 36 H 1.09000 * 109.58665 * 6.63905 * 12 11 9 37 37 H 1.09000 * 109.63776 * 294.87118 * 13 12 11 38 38 H 1.08995 * 109.43705 * 174.72699 * 13 12 11 39 39 H 1.09001 * 109.45247 * 58.52428 * 14 13 12 40 40 H 1.09003 * 109.46806 * 55.06277 * 15 14 13 41 41 H 1.08991 * 109.47412 * 175.06548 * 15 14 13 42 42 H 0.97000 * 120.00155 * 359.97438 * 16 15 14 43 43 H 0.96998 * 120.00384 * 179.97438 * 20 19 17 44 44 H 1.09001 * 109.50115 * 301.41518 * 25 14 13 45 45 H 1.09005 * 109.50047 * 181.31410 * 25 14 13 46 46 H 1.09007 * 109.58548 * 353.36495 * 26 11 9 47 47 H 1.08991 * 109.59236 * 113.65007 * 26 11 9 48 48 H 1.08005 * 120.85290 * 359.97438 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1866 0.0006 5 6 4.2088 1.1312 1.1948 6 7 5.5237 1.0266 1.2122 7 6 6.2313 0.9649 0.1032 8 6 5.6047 1.0202 -1.1422 9 6 6.3995 0.9563 -2.3871 10 8 7.3355 0.1854 -2.4717 11 7 6.0831 1.7492 -3.4301 12 6 5.0329 2.7688 -3.3036 13 6 5.6145 4.1248 -3.7313 14 6 6.2026 4.0000 -5.1387 15 6 6.7498 5.3574 -5.5849 16 7 5.6457 6.3124 -5.7077 17 6 5.8956 7.6015 -6.0963 18 1 6.9066 7.9143 -6.3117 19 6 4.8494 8.5063 -6.2132 20 7 3.6173 8.1254 -5.9502 21 14 5.1904 10.2650 -6.7426 22 1 6.6465 10.4382 -6.9763 23 1 4.4500 10.5569 -7.9965 24 1 4.7454 11.1980 -5.6765 25 6 7.3357 2.9713 -5.1305 26 6 6.7774 1.6060 -4.7169 27 6 4.2098 1.1312 -1.1931 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6884 1.8465 0.8900 32 1 1.6885 1.8464 -0.8900 33 1 3.6670 1.1742 2.1281 34 1 7.3062 0.8751 0.1582 35 1 4.1922 2.5094 -3.9471 36 1 4.6994 2.8233 -2.2673 37 1 6.3980 4.4234 -3.0349 38 1 4.8233 4.8745 -3.7329 39 1 5.4242 3.6773 -5.8301 40 1 7.4645 5.7214 -4.8467 41 1 7.2463 5.2498 -6.5491 42 1 4.7377 6.0317 -5.5139 43 1 2.8863 8.7577 -6.0315 44 1 8.1029 3.2807 -4.4208 45 1 7.7695 2.8999 -6.1280 46 1 7.5953 0.8928 -4.6135 47 1 6.0768 1.2512 -5.4727 48 1 3.6915 1.1717 -2.1398 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205479179.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:48 Heat of formation + Delta-G solvation = -53.422747 kcal Electronic energy + Delta-G solvation = -28557.089459 eV Core-core repulsion = 24611.463714 eV Total energy + Delta-G solvation = -3945.625745 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.05581 -40.63232 -38.97610 -38.61271 -36.62038 -34.82776 -34.04719 -33.36363 -32.09664 -31.81508 -28.43877 -28.36111 -26.50660 -26.11430 -25.07338 -24.50445 -23.75939 -22.86608 -21.53925 -20.30627 -19.18226 -18.48876 -18.13552 -17.81810 -17.36919 -17.14495 -16.70991 -16.38029 -16.26882 -16.01967 -15.70435 -15.41911 -15.33449 -15.05939 -14.84406 -14.48845 -14.39771 -14.08589 -13.97695 -13.82881 -13.56946 -13.31804 -13.11122 -12.94886 -12.89819 -12.78210 -12.36179 -12.25611 -12.13023 -11.96764 -11.69566 -11.60540 -11.35732 -11.32804 -10.95366 -10.80551 -10.69304 -10.50980 -10.24698 -9.74403 -8.97374 -7.94926 -5.22282 -0.39708 -0.01428 1.47654 1.48190 1.51743 1.57844 1.84244 2.47288 2.56212 3.04252 3.19158 3.38827 3.43529 3.64766 3.69278 3.74824 3.78414 3.82932 3.87322 3.97618 4.10995 4.27816 4.31816 4.33684 4.38409 4.52713 4.54902 4.56596 4.60311 4.63743 4.68469 4.76952 4.82497 4.86116 4.92621 4.93831 4.99623 5.03230 5.08134 5.15314 5.25096 5.43104 5.47389 5.52473 5.53928 6.18159 6.20956 6.28532 6.74527 6.92587 7.35469 8.11195 8.35929 9.28484 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011007 B = 0.002761 C = 0.002397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2543.173254 B =10137.583985 C =11680.425707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.412 6.412 3 C 0.105 3.895 4 C -0.148 4.148 5 C 0.138 3.862 6 N -0.504 5.504 7 C 0.148 3.852 8 C -0.193 4.193 9 C 0.566 3.434 10 O -0.571 6.571 11 N -0.597 5.597 12 C 0.105 3.895 13 C -0.119 4.119 14 C -0.083 4.083 15 C 0.156 3.844 16 N -0.741 5.741 17 C -0.245 4.245 18 H 0.070 0.930 19 C -0.072 4.072 20 N -0.965 5.965 21 Si 0.968 3.032 22 H -0.270 1.270 23 H -0.292 1.292 24 H -0.293 1.293 25 C -0.116 4.116 26 C 0.114 3.886 27 C -0.022 4.022 28 H 0.057 0.943 29 H 0.051 0.949 30 H 0.093 0.907 31 H 0.087 0.913 32 H 0.077 0.923 33 H 0.188 0.812 34 H 0.165 0.835 35 H 0.094 0.906 36 H 0.097 0.903 37 H 0.053 0.947 38 H 0.068 0.932 39 H 0.075 0.925 40 H 0.011 0.989 41 H 0.019 0.981 42 H 0.377 0.623 43 H 0.251 0.749 44 H 0.058 0.942 45 H 0.091 0.909 46 H 0.088 0.912 47 H 0.089 0.911 48 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.553 -17.605 12.147 21.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.332 6.332 3 C 0.028 3.972 4 C -0.150 4.150 5 C -0.019 4.019 6 N -0.211 5.211 7 C -0.010 4.010 8 C -0.198 4.198 9 C 0.355 3.645 10 O -0.452 6.452 11 N -0.329 5.329 12 C -0.017 4.017 13 C -0.157 4.157 14 C -0.102 4.102 15 C 0.030 3.970 16 N -0.385 5.385 17 C -0.377 4.377 18 H 0.088 0.912 19 C -0.264 4.264 20 N -0.616 5.616 21 Si 0.798 3.202 22 H -0.195 1.195 23 H -0.220 1.220 24 H -0.220 1.220 25 C -0.155 4.155 26 C -0.007 4.007 27 C -0.048 4.048 28 H 0.075 0.925 29 H 0.069 0.931 30 H 0.111 0.889 31 H 0.105 0.895 32 H 0.095 0.905 33 H 0.205 0.795 34 H 0.182 0.818 35 H 0.112 0.888 36 H 0.115 0.885 37 H 0.072 0.928 38 H 0.087 0.913 39 H 0.093 0.907 40 H 0.029 0.971 41 H 0.037 0.963 42 H 0.210 0.790 43 H 0.060 0.940 44 H 0.077 0.923 45 H 0.109 0.891 46 H 0.106 0.894 47 H 0.107 0.893 48 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -3.385 -18.057 12.830 22.408 hybrid contribution -0.667 1.411 -1.149 1.937 sum -4.052 -16.647 11.681 20.736 Atomic orbital electron populations 1.22946 0.79041 1.03812 1.01296 1.87920 1.21655 1.27894 1.95729 1.21363 0.86963 0.85320 1.03547 1.20771 0.97120 1.03447 0.93658 1.23411 0.89457 0.89990 0.98993 1.67859 1.08916 1.13746 1.30613 1.23018 1.01022 0.90683 0.86247 1.20850 0.95272 1.08820 0.94900 1.18299 0.83023 0.80010 0.83179 1.90759 1.30794 1.40798 1.82822 1.48113 1.38184 1.34733 1.11852 1.22270 0.89746 0.86241 1.03395 1.21887 1.00816 0.96628 0.96371 1.21198 0.98160 0.94109 0.96758 1.20813 0.90315 0.88967 0.96909 1.42540 1.05915 1.07983 1.82016 1.19626 0.93340 0.88341 1.36356 0.91182 1.25473 0.95310 1.02055 1.03574 1.69785 0.98983 1.35514 1.57292 0.85145 0.77550 0.80450 0.77050 1.19475 1.21965 1.21990 1.21825 0.97300 0.93572 1.02782 1.21721 0.97802 0.97638 0.83565 1.21970 0.91927 0.90811 1.00100 0.92477 0.93055 0.88879 0.89513 0.90526 0.79540 0.81827 0.88808 0.88512 0.92779 0.91333 0.90672 0.97054 0.96273 0.79025 0.93969 0.92273 0.89099 0.89396 0.89288 0.82355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 11.01 113.37 1.25 1.48 16 2 O -0.41 -6.43 10.69 -148.98 -1.59 -8.02 16 3 C 0.10 1.27 6.08 71.24 0.43 1.70 16 4 C -0.15 -2.41 5.52 -19.81 -0.11 -2.52 16 5 C 0.14 2.38 10.85 84.71 0.92 3.30 16 6 N -0.50 -11.16 10.35 -194.76 -2.01 -13.17 16 7 C 0.15 3.43 10.82 85.02 0.92 4.35 16 8 C -0.19 -4.38 5.10 -19.99 -0.10 -4.48 16 9 C 0.57 14.82 7.33 86.78 0.64 15.46 16 10 O -0.57 -18.58 16.37 -3.88 -0.06 -18.64 16 11 N -0.60 -13.71 2.97 -821.51 -2.44 -16.14 16 12 C 0.11 2.19 4.98 86.51 0.43 2.62 16 13 C -0.12 -3.26 5.26 30.82 0.16 -3.10 16 14 C -0.08 -2.39 2.19 -10.77 -0.02 -2.42 16 15 C 0.16 5.99 5.65 86.38 0.49 6.48 16 16 N -0.74 -36.20 5.32 -343.46 -1.83 -38.03 16 17 C -0.24 -13.44 9.99 84.03 0.84 -12.60 16 18 H 0.07 3.77 7.83 -2.91 -0.02 3.74 16 19 C -0.07 -4.02 5.50 84.86 0.47 -3.56 16 20 N -0.96 -57.02 13.06 21.65 0.28 -56.74 16 21 Si 0.97 45.38 29.55 68.60 2.03 47.41 16 22 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 23 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 24 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 25 C -0.12 -2.74 5.36 30.67 0.16 -2.57 16 26 C 0.11 2.49 6.44 86.36 0.56 3.04 16 27 C -0.02 -0.40 7.20 22.73 0.16 -0.24 16 28 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 29 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.09 0.74 8.14 -2.38 -0.02 0.72 16 31 H 0.09 0.69 8.09 -2.38 -0.02 0.67 16 32 H 0.08 0.77 8.09 -2.38 -0.02 0.75 16 33 H 0.19 2.06 8.06 -2.91 -0.02 2.03 16 34 H 0.16 3.66 8.06 -2.91 -0.02 3.63 16 35 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.10 1.82 4.78 -2.39 -0.01 1.80 16 37 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.07 2.20 7.15 -2.39 -0.02 2.18 16 39 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 40 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 41 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 42 H 0.38 19.11 6.84 -92.71 -0.63 18.48 16 43 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 44 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 45 H 0.09 1.91 8.14 -2.38 -0.02 1.90 16 46 H 0.09 2.05 7.00 -2.38 -0.02 2.04 16 47 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 48 H 0.16 2.35 6.74 -2.91 -0.02 2.33 16 Total: -1.00 -71.32 389.42 1.90 -69.41 By element: Atomic # 1 Polarization: 26.65 SS G_CDS: 0.33 Total: 26.98 kcal Atomic # 6 Polarization: -0.24 SS G_CDS: 7.19 Total: 6.95 kcal Atomic # 7 Polarization: -118.09 SS G_CDS: -5.99 Total: -124.08 kcal Atomic # 8 Polarization: -25.01 SS G_CDS: -1.66 Total: -26.66 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Total: -71.32 1.90 -69.41 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205479179.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.992 kcal (2) G-P(sol) polarization free energy of solvation -71.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds