Wall clock time and date at job start Tue Mar 31 2020 17:57:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42892 * 114.00593 * 2 1 4 4 H 1.09001 * 110.91361 * 32.45288 * 3 2 1 5 5 C 1.54907 * 111.00746 * 268.55150 * 3 2 1 6 6 N 1.47420 * 104.83524 * 204.91501 * 5 3 2 7 7 C 1.36932 * 125.65088 * 204.09015 * 6 5 3 8 8 H 1.08001 * 120.00072 * 180.02562 * 7 6 5 9 9 C 1.38815 * 120.00288 * 0.04266 * 7 6 5 10 10 N 1.31619 * 119.99512 * 0.02562 * 9 7 6 11 11 Si 1.86795 * 120.00603 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47128 * 89.99827 * 11 9 7 13 13 H 1.48497 * 109.47297 * 210.00245 * 11 9 7 14 14 H 1.48507 * 109.46877 * 330.00101 * 11 9 7 15 15 C 1.47026 * 108.70428 * 24.12518 * 6 5 3 16 16 C 1.54330 * 107.26840 * 358.94103 * 15 6 5 17 17 H 1.08998 * 110.71700 * 96.16950 * 16 15 6 18 18 N 1.46495 * 110.72220 * 219.44076 * 16 15 6 19 19 C 1.34778 * 120.00419 * 273.55342 * 18 16 15 20 20 O 1.21279 * 119.99538 * 359.97438 * 19 18 16 21 21 C 1.50701 * 120.00038 * 179.97438 * 19 18 16 22 22 C 1.52998 * 109.46653 * 179.97438 * 21 19 18 23 23 C 1.53003 * 109.46917 * 179.97438 * 22 21 19 24 24 C 1.50702 * 109.47397 * 180.02562 * 23 22 21 25 25 C 1.38224 * 119.62145 * 124.99785 * 24 23 22 26 26 C 1.38624 * 119.16171 * 179.97438 * 25 24 23 27 27 C 1.38670 * 118.42263 * 0.02562 * 26 25 24 28 28 C 1.38184 * 119.16328 * 359.97438 * 27 26 25 29 29 N 1.31855 * 119.61094 * 304.72284 * 24 23 22 30 30 H 1.08996 * 109.47388 * 59.99216 * 1 2 3 31 31 H 1.08995 * 109.47485 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46862 * 299.99886 * 1 2 3 33 33 H 1.08997 * 110.36783 * 86.07220 * 5 3 2 34 34 H 1.08997 * 110.45914 * 323.79871 * 5 3 2 35 35 H 0.97003 * 120.00403 * 180.02562 * 10 9 7 36 36 H 1.08998 * 109.88351 * 118.35702 * 15 6 5 37 37 H 1.08998 * 109.88379 * 239.52492 * 15 6 5 38 38 H 0.97005 * 119.99930 * 93.54212 * 18 16 15 39 39 H 1.09001 * 109.46862 * 299.99367 * 21 19 18 40 40 H 1.08996 * 109.47251 * 59.99525 * 21 19 18 41 41 H 1.09001 * 109.47258 * 299.99478 * 22 21 19 42 42 H 1.08996 * 109.47391 * 59.99964 * 22 21 19 43 43 H 1.09001 * 109.46746 * 299.99812 * 23 22 21 44 44 H 1.08996 * 109.47103 * 59.99808 * 23 22 21 45 45 H 1.08000 * 120.41803 * 359.97438 * 25 24 23 46 46 H 1.08003 * 120.78796 * 179.97438 * 26 25 24 47 47 H 1.08002 * 120.42422 * 180.02562 * 27 26 25 48 48 H 1.08000 * 119.61847 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 1 1.3837 2.0103 0.5464 5 6 2.2696 1.7977 -1.4456 6 7 3.3612 2.7805 -1.3195 7 6 3.6238 3.7986 -2.1968 8 1 4.4512 4.4684 -2.0147 9 6 2.8263 3.9701 -3.3200 10 7 1.8174 3.1544 -3.5414 11 14 3.1839 5.3594 -4.5163 12 1 4.1237 4.8822 -5.5624 13 1 1.9178 5.8025 -5.1532 14 1 3.7948 6.4980 -3.7843 15 6 4.1218 2.4860 -0.0963 16 6 3.4486 1.2736 0.5810 17 1 3.9550 0.3483 0.3067 18 7 3.4237 1.4407 2.0362 19 6 4.4796 1.0510 2.7776 20 8 5.4504 0.5616 2.2399 21 6 4.4541 1.2234 4.2745 22 6 5.7644 0.7043 4.8699 23 6 5.7388 0.8798 6.3896 24 6 7.0296 0.3691 6.9762 25 6 7.7919 1.1991 7.7766 26 6 8.9773 0.7193 8.3116 27 6 9.3537 -0.5830 8.0199 28 6 8.5402 -1.3541 7.2117 29 7 7.4160 -0.8661 6.7243 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.3762 2.2730 -1.8505 34 1 2.5781 0.9678 -2.0813 35 1 1.2602 3.2739 -4.3264 36 1 5.1534 2.2428 -0.3507 37 1 4.0957 3.3461 0.5727 38 1 2.6471 1.8319 2.4663 39 1 4.3379 2.2798 4.5166 40 1 3.6182 0.6612 4.6908 41 1 5.8801 -0.3522 4.6278 42 1 6.6004 1.2662 4.4537 43 1 5.6232 1.9364 6.6313 44 1 4.9026 0.3182 6.8062 45 1 7.4680 2.2086 7.9826 46 1 9.5934 1.3453 8.9401 47 1 10.2707 -0.9899 8.4199 48 1 8.8261 -2.3695 6.9800 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001213761666.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:42 Heat of formation + Delta-G solvation = -25.070738 kcal Electronic energy + Delta-G solvation = -27819.432517 eV Core-core repulsion = 23875.036207 eV Total energy + Delta-G solvation = -3944.396310 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.48512 -39.67862 -38.11296 -35.92999 -35.13872 -33.97039 -32.67707 -31.96101 -31.44313 -28.91978 -27.90773 -26.72503 -26.09329 -24.36876 -23.85624 -23.12954 -21.40072 -20.67455 -20.29020 -19.69782 -17.48085 -17.07484 -16.75111 -16.48293 -16.33233 -15.74923 -15.58557 -15.47489 -14.86699 -14.48580 -14.33821 -14.27566 -13.98215 -13.78854 -13.46060 -13.31442 -13.17883 -12.87955 -12.36507 -12.24586 -12.15598 -11.83237 -11.77971 -11.45652 -11.33869 -11.27879 -11.00523 -10.84073 -10.83021 -10.76795 -10.18292 -10.16078 -9.88588 -9.79111 -9.69903 -9.58797 -9.23858 -9.00325 -8.70077 -8.63682 -6.89348 -5.69275 -3.12134 0.81524 0.99137 2.90516 3.35552 3.39392 3.44087 3.45790 3.54118 4.02175 4.13976 4.35889 4.49533 4.54609 4.73401 4.79250 4.83511 4.93320 4.99251 5.20596 5.26128 5.30570 5.39504 5.43390 5.48394 5.52589 5.54463 5.60742 5.63958 5.71594 5.72543 5.80790 5.87062 5.88422 5.98150 6.10420 6.11086 6.23969 6.30609 6.43258 6.54051 6.71626 6.94559 7.26812 7.56083 7.72155 7.74943 7.76719 7.82083 8.27231 8.50932 9.16443 9.76849 10.39713 11.34523 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.017018 B = 0.002069 C = 0.001909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.923385 B =13531.158227 C =14661.968114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.381 6.381 3 C 0.055 3.945 4 H 0.066 0.934 5 C 0.139 3.861 6 N -0.601 5.601 7 C -0.221 4.221 8 H 0.080 0.920 9 C -0.012 4.012 10 N -0.923 5.923 11 Si 0.917 3.083 12 H -0.288 1.288 13 H -0.290 1.290 14 H -0.281 1.281 15 C 0.131 3.869 16 C 0.138 3.862 17 H 0.100 0.900 18 N -0.718 5.718 19 C 0.510 3.490 20 O -0.539 6.539 21 C -0.140 4.140 22 C -0.095 4.095 23 C -0.071 4.071 24 C 0.135 3.865 25 C -0.173 4.173 26 C -0.075 4.075 27 C -0.183 4.183 28 C 0.103 3.897 29 N -0.478 5.478 30 H 0.047 0.953 31 H 0.078 0.922 32 H 0.033 0.967 33 H 0.112 0.888 34 H 0.026 0.974 35 H 0.253 0.747 36 H 0.033 0.967 37 H 0.029 0.971 38 H 0.397 0.603 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.082 0.918 42 H 0.068 0.932 43 H 0.079 0.921 44 H 0.084 0.916 45 H 0.134 0.866 46 H 0.133 0.867 47 H 0.133 0.867 48 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.871 -4.992 24.860 25.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.300 6.300 3 C -0.005 4.005 4 H 0.084 0.916 5 C 0.014 3.986 6 N -0.329 5.329 7 C -0.349 4.349 8 H 0.098 0.902 9 C -0.207 4.207 10 N -0.572 5.572 11 Si 0.748 3.252 12 H -0.215 1.215 13 H -0.216 1.216 14 H -0.207 1.207 15 C 0.004 3.996 16 C 0.033 3.967 17 H 0.118 0.882 18 N -0.369 5.369 19 C 0.297 3.703 20 O -0.415 6.415 21 C -0.180 4.180 22 C -0.133 4.133 23 C -0.109 4.109 24 C -0.003 4.003 25 C -0.193 4.193 26 C -0.101 4.101 27 C -0.203 4.203 28 C -0.054 4.054 29 N -0.188 5.188 30 H 0.066 0.934 31 H 0.096 0.904 32 H 0.052 0.948 33 H 0.130 0.870 34 H 0.044 0.956 35 H 0.064 0.936 36 H 0.051 0.949 37 H 0.047 0.953 38 H 0.230 0.770 39 H 0.110 0.890 40 H 0.111 0.889 41 H 0.101 0.899 42 H 0.087 0.913 43 H 0.098 0.902 44 H 0.102 0.898 45 H 0.152 0.848 46 H 0.151 0.849 47 H 0.151 0.849 48 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 5.081 -5.957 23.747 25.004 hybrid contribution 0.236 1.617 0.137 1.640 sum 5.317 -4.340 23.884 24.850 Atomic orbital electron populations 1.22691 0.81597 1.01879 1.00009 1.87844 1.19236 1.27733 1.95138 1.24011 0.92206 0.83735 1.00526 0.91613 1.22322 0.95325 0.91908 0.89087 1.44315 1.31844 1.33161 1.23560 1.19096 1.11036 1.04155 1.00634 0.90225 1.24810 0.98058 0.99392 0.98442 1.69755 1.19914 1.38758 1.28776 0.86025 0.77047 0.81199 0.80946 1.21529 1.21642 1.20659 1.21610 0.95209 0.93645 0.89143 1.22081 0.96270 1.00145 0.78200 0.88231 1.46040 1.19379 1.63836 1.07637 1.20637 0.82659 0.77643 0.89394 1.90716 1.33094 1.43789 1.73940 1.21683 1.00505 1.03463 0.92351 1.21227 0.96350 1.03592 0.92134 1.20612 0.93154 1.00933 0.96193 1.21311 0.96256 0.89513 0.93170 1.22017 0.96140 1.01355 0.99739 1.21588 0.95715 0.95513 0.97252 1.22140 1.01691 0.95464 1.01008 1.22799 0.89737 0.99999 0.92850 1.67510 1.15928 1.13988 1.21336 0.93428 0.90354 0.94831 0.87038 0.95597 0.93625 0.94889 0.95297 0.76968 0.89006 0.88948 0.89938 0.91309 0.90210 0.89802 0.84790 0.84942 0.84924 0.82750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.51 10.89 101.05 1.10 1.61 16 2 O -0.38 -7.04 10.51 -35.23 -0.37 -7.42 16 3 C 0.05 1.06 3.10 -24.58 -0.08 0.98 16 4 H 0.07 1.17 7.76 -51.93 -0.40 0.77 16 5 C 0.14 3.42 5.62 -2.53 -0.01 3.41 16 6 N -0.60 -15.64 3.39 -170.08 -0.58 -16.21 16 7 C -0.22 -6.19 10.27 -15.06 -0.15 -6.35 16 8 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 9 C -0.01 -0.33 5.49 -17.43 -0.10 -0.42 16 10 N -0.92 -26.69 10.09 55.49 0.56 -26.13 16 11 Si 0.92 22.05 29.55 -169.99 -5.02 17.03 16 12 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 13 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 14 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 15 C 0.13 2.91 6.99 -3.06 -0.02 2.89 16 16 C 0.14 2.65 2.97 -66.10 -0.20 2.46 16 17 H 0.10 2.14 7.70 -51.93 -0.40 1.74 16 18 N -0.72 -10.78 5.13 -52.03 -0.27 -11.05 16 19 C 0.51 7.73 7.83 -10.98 -0.09 7.64 16 20 O -0.54 -10.59 15.71 5.56 0.09 -10.50 16 21 C -0.14 -1.40 5.70 -27.88 -0.16 -1.56 16 22 C -0.09 -1.04 4.36 -26.73 -0.12 -1.16 16 23 C -0.07 -0.59 5.61 -27.88 -0.16 -0.75 16 24 C 0.14 1.33 6.17 -82.59 -0.51 0.82 16 25 C -0.17 -1.38 9.71 -39.44 -0.38 -1.76 16 26 C -0.07 -0.53 10.18 -39.28 -0.40 -0.93 16 27 C -0.18 -1.32 10.11 -39.44 -0.40 -1.72 16 28 C 0.10 0.93 11.18 -17.54 -0.20 0.73 16 29 N -0.48 -5.42 9.89 -9.47 -0.09 -5.51 16 30 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.03 0.41 8.11 -51.93 -0.42 -0.01 16 33 H 0.11 2.99 5.87 -51.93 -0.30 2.69 16 34 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 36 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.03 0.62 8.03 -51.93 -0.42 0.21 16 38 H 0.40 4.71 8.52 -40.82 -0.35 4.36 16 39 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 41 H 0.08 1.10 7.91 -51.93 -0.41 0.69 16 42 H 0.07 0.87 8.10 -51.93 -0.42 0.45 16 43 H 0.08 0.49 7.87 -51.93 -0.41 0.08 16 44 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.13 0.76 7.95 -52.49 -0.42 0.34 16 46 H 0.13 0.59 8.06 -52.48 -0.42 0.17 16 47 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 48 H 0.16 1.03 8.06 -52.49 -0.42 0.60 16 LS Contribution 396.92 15.07 5.98 5.98 Total: -1.00 -34.89 396.92 -9.29 -44.18 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -7.72 Total: 3.74 kcal Atomic # 6 Polarization: 7.76 SS G_CDS: -1.86 Total: 5.90 kcal Atomic # 7 Polarization: -58.53 SS G_CDS: -0.38 Total: -58.91 kcal Atomic # 8 Polarization: -17.64 SS G_CDS: -0.28 Total: -17.92 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -34.89 -9.29 -44.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001213761666.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.113 kcal (2) G-P(sol) polarization free energy of solvation -34.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds